Wall clock time and date at job start Tue Mar 31 2020 13:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47327 * 2 1 4 4 C 1.53004 * 109.46438 * 240.00468 * 2 1 3 5 5 C 1.50693 * 109.47315 * 60.00086 * 4 2 1 6 6 H 1.07998 * 120.00156 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99994 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99754 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00104 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47308 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47089 * 120.00432 * 9 7 5 12 12 H 1.48504 * 109.47328 * 240.00405 * 9 7 5 13 13 C 1.52997 * 109.46822 * 120.00408 * 2 1 3 14 14 N 1.46498 * 109.47457 * 299.99435 * 13 2 1 15 15 C 1.34776 * 120.00054 * 180.02562 * 14 13 2 16 16 O 1.21373 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.49280 * 119.99819 * 180.02562 * 15 14 13 18 18 O 1.21365 * 120.00111 * 5.35059 * 17 15 14 19 19 C 1.47322 * 120.00005 * 185.35543 * 17 15 14 20 20 C 1.39973 * 120.15437 * 354.06199 * 19 17 15 21 21 C 1.37772 * 119.83246 * 180.20864 * 20 19 17 22 22 C 1.38627 * 120.16082 * 359.52145 * 21 20 19 23 23 Cl 1.73594 * 119.83647 * 180.25636 * 22 21 20 24 24 C 1.38619 * 120.32146 * 0.22691 * 22 21 20 25 25 C 1.37771 * 120.16015 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.46734 * 299.99749 * 1 2 3 27 27 H 1.08999 * 109.47511 * 59.99337 * 1 2 3 28 28 H 1.08996 * 109.47395 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47204 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47366 * 300.00752 * 3 2 1 31 31 H 1.09004 * 109.46546 * 60.00158 * 3 2 1 32 32 H 1.08999 * 109.46363 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.47112 * 299.99388 * 4 2 1 34 34 H 0.97004 * 120.00069 * 179.97438 * 8 7 5 35 35 H 1.09013 * 109.46669 * 179.97438 * 13 2 1 36 36 H 1.09003 * 109.47282 * 60.00289 * 13 2 1 37 37 H 0.96993 * 119.99791 * 0.02562 * 14 13 2 38 38 H 1.07994 * 120.08505 * 0.02562 * 20 19 17 39 39 H 1.08004 * 119.91775 * 179.79729 * 21 20 19 40 40 H 1.07999 * 119.91472 * 180.02562 * 24 22 21 41 41 H 1.08007 * 120.07602 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0107 -2.4797 6 1 0.9170 0.8677 -2.3805 7 6 1.8709 -0.4814 -3.7321 8 7 2.6269 -1.5507 -3.8528 9 14 1.2476 0.3988 -5.2572 10 1 0.4223 1.5653 -4.8529 11 1 2.4023 0.8663 -6.0655 12 1 0.4232 -0.5350 -6.0656 13 6 2.0399 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8777 -0.4911 3.6695 16 8 2.5762 -1.4775 3.7807 17 6 1.3798 0.2123 4.8884 18 8 0.6035 1.1389 4.7798 19 6 1.8306 -0.2183 6.2232 20 6 2.6260 -1.3617 6.3617 21 6 3.0404 -1.7608 7.6136 22 6 2.6797 -1.0274 8.7333 23 17 3.2120 -1.5342 10.3060 24 6 1.8966 0.1089 8.6032 25 6 1.4705 0.5171 7.3582 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 3.1299 -0.7216 -1.2491 33 1 1.6766 -1.7489 -1.2494 34 1 2.8612 -1.8821 -4.7339 35 1 3.1301 -0.7217 1.2489 36 1 1.6766 -1.7490 1.2491 37 1 0.9939 0.7577 2.3565 38 1 2.9117 -1.9313 5.4898 39 1 3.6514 -2.6447 7.7224 40 1 1.6198 0.6756 9.4799 41 1 0.8607 1.4030 7.2583 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360410864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:30 Heat of formation + Delta-G solvation = -60.399521 kcal Electronic energy + Delta-G solvation = -23976.411590 eV Core-core repulsion = 20268.148196 eV Total energy + Delta-G solvation = -3708.263394 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98425 -39.30973 -38.52004 -37.29090 -36.83800 -33.85581 -32.17062 -31.58381 -31.43240 -27.58478 -26.93396 -26.57752 -25.42662 -23.40820 -23.10735 -22.01384 -20.29897 -18.70806 -17.65054 -17.50501 -16.79786 -16.34995 -15.91683 -15.68528 -15.27301 -14.79743 -14.52475 -14.48195 -14.32543 -13.83134 -13.80705 -13.39954 -13.19721 -12.85535 -12.63187 -12.25226 -12.17946 -12.11225 -11.86995 -11.62561 -11.24739 -11.14105 -11.07083 -10.87358 -10.70257 -10.49910 -10.29730 -9.96426 -9.61627 -9.50485 -9.22267 -9.20526 -9.04628 -8.97634 -8.40530 -6.04492 -4.05778 -0.09512 0.89615 1.28777 1.62302 2.65552 2.81165 3.27694 3.36129 3.36923 3.38496 4.05303 4.33763 4.41781 4.44441 4.51653 4.84079 4.90047 5.21681 5.31151 5.34507 5.50243 5.56147 5.65793 5.67113 5.78090 5.85198 6.08339 6.09329 6.12854 6.24131 6.29033 6.42939 6.57125 6.60798 6.67774 6.98164 7.00561 7.04180 7.38444 7.57912 7.68915 7.93307 7.95085 8.35461 8.99003 9.57734 11.06910 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.039040 B = 0.002060 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.032430 B =13590.622113 C =14099.909474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 C -0.130 4.130 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.122 3.878 14 N -0.687 5.687 15 C 0.479 3.521 16 O -0.515 6.515 17 C 0.393 3.607 18 O -0.420 6.420 19 C -0.165 4.165 20 C -0.051 4.051 21 C -0.131 4.131 22 C 0.000 4.000 23 Cl -0.065 7.065 24 C -0.133 4.133 25 C -0.044 4.044 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.409 0.591 38 H 0.183 0.817 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 2.598 25.023 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.074 4.074 3 C -0.187 4.187 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.000 4.000 14 N -0.339 5.339 15 C 0.262 3.738 16 O -0.394 6.394 17 C 0.266 3.734 18 O -0.292 6.292 19 C -0.166 4.166 20 C -0.068 4.068 21 C -0.149 4.149 22 C -0.027 4.027 23 Cl -0.036 7.036 24 C -0.152 4.152 25 C -0.062 4.062 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.247 0.753 38 H 0.200 0.800 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.856 2.251 25.018 25.134 hybrid contribution -0.447 0.683 -0.760 1.115 sum -1.303 2.933 24.258 24.470 Atomic orbital electron populations 1.21796 0.95092 1.01316 1.00540 1.20943 0.95663 0.95967 0.94812 1.21795 1.00619 0.95792 1.00524 1.19096 0.96401 0.95240 0.89356 1.21207 1.31214 1.12111 0.90448 0.92147 1.25018 0.95291 0.95092 0.99145 1.69968 1.36938 1.23018 1.23398 0.86579 0.78615 0.79680 0.83368 1.19779 1.21128 1.21121 1.21877 0.99431 0.96332 0.82377 1.46244 1.50724 1.31461 1.05483 1.20545 0.82380 0.85685 0.85234 1.90521 1.37322 1.25888 1.85646 1.22595 0.79195 0.81937 0.89668 1.90584 1.26069 1.23550 1.88995 1.20221 1.03921 0.99175 0.93316 1.22753 0.90893 0.94066 0.99133 1.21236 1.01909 1.00926 0.90867 1.21453 0.98196 0.96207 0.86867 1.98392 1.88899 1.90599 1.25724 1.20985 0.99393 0.96389 0.98394 1.21372 0.95823 0.98495 0.90533 0.95131 0.91175 0.93215 0.93213 0.91167 0.95168 0.96244 0.96240 0.93058 0.90919 0.90929 0.75332 0.80041 0.84048 0.84188 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.24 7.65 -34.44 -0.26 -13.50 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.12 1.98 4.56 -4.04 -0.02 1.96 16 14 N -0.69 -9.55 4.95 -60.78 -0.30 -9.85 16 15 C 0.48 6.53 7.84 -11.67 -0.09 6.44 16 16 O -0.52 -7.79 13.42 5.48 0.07 -7.72 16 17 C 0.39 4.73 7.17 -31.30 -0.22 4.50 16 18 O -0.42 -5.40 16.50 5.48 0.09 -5.31 16 19 C -0.16 -1.75 5.88 -104.91 -0.62 -2.37 16 20 C -0.05 -0.52 9.30 -39.10 -0.36 -0.88 16 21 C -0.13 -1.15 9.81 -39.61 -0.39 -1.54 16 22 C 0.00 0.00 6.33 -39.30 -0.25 -0.25 16 23 Cl -0.07 -0.51 28.95 -51.86 -1.50 -2.01 16 24 C -0.13 -1.05 9.81 -39.61 -0.39 -1.43 16 25 C -0.04 -0.39 9.60 -39.11 -0.38 -0.76 16 26 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 27 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 31 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.41 5.29 5.64 -40.82 -0.23 5.06 16 38 H 0.18 2.05 4.84 -52.53 -0.25 1.79 16 39 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.14 1.10 7.67 -52.48 -0.40 0.70 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -28.63 356.11 -8.33 -36.97 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.10 Total: 2.72 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.67 Total: -10.91 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.44 Total: -34.97 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.16 Total: -13.03 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.63 -8.33 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.432 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds