Wall clock time and date at job start Tue Mar 31 2020 14:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09000 * 109.46929 * 305.74621 * 3 2 1 5 5 C 1.50702 * 109.47257 * 185.74631 * 3 2 1 6 6 H 1.08000 * 119.99615 * 334.87187 * 5 3 2 7 7 C 1.37868 * 119.99832 * 154.87406 * 5 3 2 8 8 N 1.31512 * 120.00250 * 5.70724 * 7 5 3 9 9 Si 1.86800 * 119.99860 * 185.69968 * 7 5 3 10 10 H 1.48504 * 109.47507 * 270.00214 * 9 7 5 11 11 H 1.48496 * 109.47219 * 30.00386 * 9 7 5 12 12 H 1.48503 * 109.47508 * 150.00298 * 9 7 5 13 13 N 1.46499 * 109.47080 * 65.74073 * 3 2 1 14 14 C 1.34768 * 120.00362 * 275.00039 * 13 3 2 15 15 O 1.21283 * 120.00051 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99980 * 179.97438 * 14 13 3 17 17 H 1.09000 * 110.85760 * 56.20960 * 16 14 13 18 18 C 1.54632 * 110.97317 * 292.38178 * 16 14 13 19 19 C 1.51279 * 104.19840 * 217.08402 * 18 16 14 20 20 O 1.21277 * 124.94279 * 196.25037 * 19 18 16 21 21 N 1.34428 * 110.11247 * 16.25212 * 19 18 16 22 22 C 1.39003 * 124.34161 * 180.42967 * 21 19 18 23 23 N 1.29620 * 124.95272 * 359.97438 * 22 21 19 24 24 C 1.31987 * 116.92180 * 179.97438 * 23 22 21 25 25 C 1.33442 * 114.56490 * 359.97438 * 24 23 22 26 26 S 1.70975 * 124.93536 * 179.67187 * 22 21 19 27 27 C 1.46753 * 111.30295 * 0.40775 * 21 19 18 28 28 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 29 29 H 1.09000 * 109.46865 * 59.99923 * 1 2 3 30 30 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 32 32 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 33 33 H 0.96995 * 120.00166 * 355.08539 * 8 7 5 34 34 H 0.97002 * 119.99628 * 95.00419 * 13 3 2 35 35 H 1.09007 * 110.48399 * 335.76156 * 18 16 14 36 36 H 1.08997 * 110.48478 * 98.40328 * 18 16 14 37 37 H 1.08000 * 122.71833 * 180.02562 * 24 23 22 38 38 H 1.08003 * 125.96889 * 180.02562 * 25 24 23 39 39 H 1.09004 * 110.24947 * 223.98658 * 27 21 19 40 40 H 1.09003 * 110.31985 * 102.02361 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5951 1.9852 -0.8341 5 6 3.5403 1.4449 -0.1423 6 1 4.1140 0.5861 0.1737 7 6 4.1804 2.5433 -0.6757 8 7 3.4965 3.6311 -0.9561 9 14 6.0191 2.4866 -0.9999 10 1 6.7491 2.9569 0.2048 11 1 6.4242 1.0922 -1.3111 12 1 6.3462 3.3656 -2.1513 13 7 1.6678 2.0921 1.2592 14 6 0.4521 2.6585 1.3917 15 8 -0.3340 2.6300 0.4686 16 6 0.0690 3.3261 2.6873 17 1 0.7879 4.1017 2.9516 18 6 -0.0695 2.2881 3.8251 19 6 -1.2363 2.7911 4.6461 20 8 -1.4993 2.4297 5.7735 21 7 -1.9393 3.6967 3.9441 22 6 -3.0673 4.3545 4.4206 23 7 -3.5864 4.1822 5.5958 24 6 -4.6612 4.8919 5.8842 25 6 -5.0693 5.7029 4.9063 26 16 -3.9677 5.5141 3.5444 27 6 -1.3624 3.9020 2.6104 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.5318 3.6370 -0.8550 34 1 2.2964 2.1146 1.9977 35 1 -0.2877 1.3013 3.4166 36 1 0.8377 2.2603 4.4285 37 1 -5.1688 4.8225 6.8350 38 1 -5.9235 6.3627 4.9444 39 1 -1.3288 4.9655 2.3736 40 1 -1.9444 3.3671 1.8599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364031389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:34 Heat of formation + Delta-G solvation = -24.541628 kcal Electronic energy + Delta-G solvation = -25130.120769 eV Core-core repulsion = 21457.748747 eV Total energy + Delta-G solvation = -3672.372022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25881 -39.58010 -38.82697 -36.63910 -35.27560 -33.30925 -32.32111 -31.38190 -29.46326 -27.98886 -26.84836 -25.45831 -23.67639 -22.91278 -21.95508 -20.36719 -19.54965 -19.16245 -18.58800 -17.72402 -17.13520 -16.76067 -15.74757 -15.53472 -15.30713 -14.94923 -14.85588 -14.39069 -13.94562 -13.91023 -13.75497 -13.47830 -13.43291 -13.13397 -13.01190 -12.48731 -12.20111 -11.82487 -11.56981 -11.48424 -11.16234 -10.89914 -10.82863 -10.60172 -10.45065 -10.40886 -10.25828 -9.94668 -9.63054 -9.49691 -9.27717 -8.82599 -8.70718 -8.36039 -7.92667 -6.65040 -4.45682 0.51935 0.81040 1.48459 2.27165 2.33220 2.87667 3.15535 3.28252 3.33219 3.49031 3.78044 4.05160 4.17861 4.31338 4.49469 4.76363 4.81684 5.02746 5.16004 5.22094 5.29265 5.35961 5.48920 5.62131 5.74797 5.76841 5.91636 5.95349 6.04796 6.15172 6.53313 6.58369 6.73179 6.83358 6.95107 7.19235 7.50184 7.58994 7.75935 7.84138 8.16479 8.47485 8.63319 8.98034 9.34029 10.73016 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.003017 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.031497 B = 9278.706689 C = 9470.400769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.242 3.758 4 H 0.055 0.945 5 C -0.609 4.609 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.888 5.888 9 Si 1.071 2.929 10 H -0.286 1.286 11 H -0.286 1.286 12 H -0.283 1.283 13 N -0.693 5.693 14 C 0.508 3.492 15 O -0.552 6.552 16 C -0.125 4.125 17 H 0.118 0.882 18 C -0.137 4.137 19 C 0.523 3.477 20 O -0.474 6.474 21 N -0.534 5.534 22 C 0.289 3.711 23 N -0.498 5.498 24 C 0.072 3.928 25 C -0.287 4.287 26 S 0.134 5.866 27 C 0.111 3.889 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.277 0.723 34 H 0.388 0.612 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.179 0.821 38 H 0.180 0.820 39 H 0.093 0.907 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.489 3.512 8.749 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C 0.143 3.857 4 H 0.073 0.927 5 C -0.647 4.647 6 H 0.075 0.925 7 C -0.177 4.177 8 N -0.522 5.522 9 Si 0.898 3.102 10 H -0.213 1.213 11 H -0.212 1.212 12 H -0.208 1.208 13 N -0.341 5.341 14 C 0.292 3.708 15 O -0.432 6.432 16 C -0.147 4.147 17 H 0.136 0.864 18 C -0.177 4.177 19 C 0.309 3.691 20 O -0.343 6.343 21 N -0.264 5.264 22 C -0.077 4.077 23 N -0.219 5.219 24 C -0.079 4.079 25 C -0.427 4.427 26 S 0.383 5.617 27 C -0.010 4.010 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.222 0.778 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.196 0.804 38 H 0.197 0.803 39 H 0.111 0.889 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.525 4.205 7.531 13.608 hybrid contribution -1.462 -0.817 1.776 2.442 sum -11.988 3.388 9.307 15.550 Atomic orbital electron populations 1.21858 0.97065 0.98770 1.02187 1.21832 0.94150 0.99052 1.00677 1.18988 0.95089 0.88626 0.83014 0.92720 1.22138 0.91172 1.05276 1.46127 0.92452 1.26006 1.07128 0.91907 0.92698 1.70736 1.10090 1.27374 1.43957 0.83512 0.73764 0.75759 0.77128 1.21267 1.21172 1.20840 1.47711 1.13150 1.54601 1.18666 1.19897 0.83709 0.79653 0.87570 1.90659 1.51023 1.60607 1.40944 1.22366 0.97026 0.99261 0.96054 0.86380 1.22337 0.98288 1.00612 0.96512 1.21197 0.83785 0.77972 0.86142 1.90784 1.69829 1.56802 1.16892 1.45540 1.23745 1.39780 1.17342 1.23500 0.93681 0.97401 0.93136 1.66417 1.12609 1.27404 1.15510 1.21582 0.92409 0.93265 1.00659 1.26847 1.07965 1.11006 0.96915 1.84117 1.21752 1.37336 1.18469 1.22354 0.94056 1.03392 0.81215 0.93257 0.92845 0.95193 0.92239 0.93552 0.91102 0.77808 0.86530 0.86301 0.80427 0.80297 0.88866 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.53 37.16 0.32 -2.26 16 2 C -0.12 -2.33 5.58 -26.73 -0.15 -2.48 16 3 C 0.24 5.37 1.80 -69.08 -0.12 5.24 16 4 H 0.05 1.41 6.37 -51.93 -0.33 1.08 16 5 C -0.61 -14.84 8.50 -34.44 -0.29 -15.13 16 6 H 0.06 1.39 7.82 -52.49 -0.41 0.98 16 7 C 0.03 0.81 5.45 -17.82 -0.10 0.71 16 8 N -0.89 -24.22 13.63 55.43 0.76 -23.46 16 9 Si 1.07 22.62 29.91 -169.99 -5.08 17.53 16 10 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.29 -5.80 7.11 56.52 0.40 -5.39 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 13 N -0.69 -12.94 5.03 -54.93 -0.28 -13.21 16 14 C 0.51 8.73 5.66 -10.99 -0.06 8.67 16 15 O -0.55 -11.05 12.64 5.55 0.07 -10.98 16 16 C -0.12 -1.61 3.54 -90.13 -0.32 -1.93 16 17 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 18 C -0.14 -1.65 6.41 -26.74 -0.17 -1.82 16 19 C 0.52 7.83 7.98 -10.86 -0.09 7.74 16 20 O -0.47 -8.71 16.86 5.56 0.09 -8.62 16 21 N -0.53 -7.40 3.11 -116.20 -0.36 -7.77 16 22 C 0.29 4.05 7.88 -87.35 -0.69 3.36 16 23 N -0.50 -7.50 9.46 -15.12 -0.14 -7.65 16 24 C 0.07 0.80 11.34 -19.16 -0.22 0.59 16 25 C -0.29 -2.63 11.35 29.06 0.33 -2.30 16 26 S 0.13 1.40 22.55 -107.50 -2.42 -1.02 16 27 C 0.11 1.39 6.18 -3.12 -0.02 1.38 16 28 H 0.05 0.89 5.63 -51.93 -0.29 0.60 16 29 H 0.05 1.04 7.89 -51.93 -0.41 0.63 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.28 7.68 6.78 -40.82 -0.28 7.41 16 34 H 0.39 6.65 8.59 -40.82 -0.35 6.30 16 35 H 0.12 1.41 7.89 -51.92 -0.41 1.00 16 36 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.18 1.06 8.06 -52.48 -0.42 0.63 16 39 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 40 H 0.11 1.48 6.96 -51.93 -0.36 1.12 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -31.60 347.49 -8.73 -40.33 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.01 Total: 7.86 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.58 Total: 1.76 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.03 Total: -52.09 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.16 Total: -19.60 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.08 Total: 17.53 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.42 Total: -1.02 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.60 -8.73 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364031389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.786 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds