Wall clock time and date at job start Tue Mar 31 2020 14:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 H 1.07999 * 119.99515 * 240.00498 * 5 3 2 7 7 C 1.37870 * 120.00176 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 N 1.46496 * 109.47194 * 65.00415 * 3 2 1 14 14 C 1.34778 * 119.99951 * 274.99836 * 13 3 2 15 15 O 1.21285 * 119.99803 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00240 * 180.02562 * 14 13 3 17 17 H 1.09000 * 110.85278 * 303.78577 * 16 14 13 18 18 C 1.54624 * 110.97071 * 67.61799 * 16 14 13 19 19 C 1.51286 * 104.19607 * 93.32498 * 18 16 14 20 20 O 1.21281 * 124.94544 * 196.21585 * 19 18 16 21 21 N 1.34419 * 110.11130 * 16.24962 * 19 18 16 22 22 C 1.39002 * 124.34799 * 180.42705 * 21 19 18 23 23 N 1.29626 * 124.94674 * 179.67305 * 22 21 19 24 24 C 1.31995 * 116.91623 * 179.77595 * 23 22 21 25 25 C 1.33442 * 114.56651 * 0.51897 * 24 23 22 26 26 S 1.70971 * 124.94119 * 359.97438 * 22 21 19 27 27 C 1.46760 * 111.30525 * 0.41329 * 21 19 18 28 28 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 29 29 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 31 31 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 32 32 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 33 33 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 34 34 H 0.96995 * 120.00444 * 95.00053 * 13 3 2 35 35 H 1.09001 * 110.48781 * 211.99963 * 18 16 14 36 36 H 1.08999 * 110.48771 * 334.64286 * 18 16 14 37 37 H 1.07993 * 122.71075 * 180.24426 * 24 23 22 38 38 H 1.07997 * 125.96579 * 179.73265 * 25 24 23 39 39 H 1.09006 * 110.24230 * 223.98195 * 27 21 19 40 40 H 1.08999 * 110.25159 * 101.98317 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3813 10 1 6.5967 0.1454 -0.2346 11 1 6.3978 0.2158 -2.6500 12 1 6.5003 2.2801 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3392 2.6327 0.4341 16 6 0.0368 3.3386 2.6545 17 1 0.1245 2.6511 3.4958 18 6 0.8749 4.6159 2.8927 19 6 0.0357 5.7263 2.2999 20 8 0.4431 6.8360 2.0288 21 7 -1.2275 5.3042 2.1180 22 6 -2.2455 6.0842 1.5820 23 7 -3.4654 5.6874 1.3959 24 6 -4.3065 6.5634 0.8787 25 6 -3.7690 7.7538 0.6051 26 16 -2.0691 7.7044 1.0653 27 6 -1.3937 3.9139 2.5577 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8292 -0.0609 -2.9501 34 1 2.2720 2.1231 1.9977 35 1 1.0257 4.7799 3.9597 36 1 1.8329 4.5452 2.3776 37 1 -5.3444 6.3338 0.6881 38 1 -4.2859 8.5997 0.1767 39 1 -1.9767 3.3541 1.8263 40 1 -1.8798 3.8822 3.5328 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364031395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:37 Heat of formation + Delta-G solvation = -16.323102 kcal Electronic energy + Delta-G solvation = -25311.127401 eV Core-core repulsion = 21639.111761 eV Total energy + Delta-G solvation = -3672.015640 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32810 -39.47630 -38.89395 -36.60653 -35.08145 -33.37916 -32.32179 -30.89266 -29.44218 -27.93914 -27.14568 -25.39295 -23.78870 -22.74534 -21.36571 -20.53957 -19.60787 -19.32459 -18.34605 -17.69596 -16.80961 -16.43662 -15.70586 -15.58348 -15.25811 -15.15697 -14.80610 -14.41893 -14.24550 -14.09026 -13.51045 -13.27982 -13.19122 -12.81870 -12.66190 -12.09992 -11.85984 -11.66342 -11.53133 -11.42771 -11.28985 -11.03631 -10.86057 -10.54646 -10.37452 -10.25127 -10.20263 -9.78024 -9.68980 -9.32571 -9.16247 -9.09677 -8.54898 -8.27601 -7.93869 -6.16673 -4.26838 0.63582 0.98317 1.73857 2.14555 2.46293 2.95102 3.11626 3.22959 3.28879 3.29405 3.78758 4.00998 4.21555 4.31338 4.46695 4.62513 4.99143 5.14873 5.16340 5.21366 5.31257 5.43685 5.51482 5.61602 5.69392 5.82387 6.25860 6.33746 6.39282 6.44077 6.59815 6.96838 7.13147 7.28573 7.34990 7.54950 7.55541 7.65561 7.76373 7.83475 8.12354 8.53762 8.70155 8.99364 9.40588 10.88500 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018361 B = 0.003342 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.609667 B = 8377.019502 C = 8758.532226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.503 3.497 15 O -0.536 6.536 16 C -0.130 4.130 17 H 0.129 0.871 18 C -0.136 4.136 19 C 0.520 3.480 20 O -0.497 6.497 21 N -0.518 5.518 22 C 0.278 3.722 23 N -0.513 5.513 24 C 0.069 3.931 25 C -0.307 4.307 26 S 0.192 5.808 27 C 0.122 3.878 28 H 0.049 0.951 29 H 0.023 0.977 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.389 0.611 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.177 0.823 38 H 0.177 0.823 39 H 0.113 0.887 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.307 9.454 11.919 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.350 5.350 14 C 0.286 3.714 15 O -0.413 6.413 16 C -0.152 4.152 17 H 0.147 0.853 18 C -0.176 4.176 19 C 0.308 3.692 20 O -0.369 6.369 21 N -0.246 5.246 22 C -0.088 4.088 23 N -0.235 5.235 24 C -0.083 4.083 25 C -0.448 4.448 26 S 0.443 5.557 27 C -0.001 4.001 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.222 0.778 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.194 0.806 38 H 0.194 0.806 39 H 0.131 0.869 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.866 10.088 10.995 17.888 hybrid contribution 0.274 -0.419 0.014 0.501 sum -9.591 9.669 11.009 17.512 Atomic orbital electron populations 1.21838 0.98324 0.98113 1.01156 1.21935 0.92593 0.99720 1.02380 1.18812 0.94277 0.89200 0.80758 0.93338 1.21172 0.90605 1.39356 1.06411 0.92081 1.24879 0.98631 0.94734 0.95345 1.69884 1.35278 1.37368 1.09309 0.86518 0.84799 0.78364 0.77495 1.20130 1.21124 1.20143 1.46468 1.14263 1.55528 1.18721 1.19909 0.83330 0.79791 0.88357 1.90724 1.51277 1.59527 1.39820 1.22487 0.95029 0.97477 1.00193 0.85344 1.22336 0.99863 0.91191 1.04246 1.21304 0.81337 0.89213 0.77367 1.90753 1.74180 1.21802 1.50207 1.45185 1.07395 1.14287 1.57775 1.23339 0.90514 0.94786 1.00155 1.66335 1.00250 1.35658 1.21282 1.21414 1.00155 0.88256 0.98466 1.27122 0.98494 1.04301 1.14863 1.84707 1.06809 1.07176 1.57034 1.22226 0.96870 0.78919 1.02132 0.93200 0.95791 0.94337 0.88267 0.94941 0.92451 0.77828 0.85865 0.86017 0.80574 0.80570 0.86858 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.45 2.24 -69.08 -0.15 6.29 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.58 8.73 -34.44 -0.30 -13.88 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.19 11.30 55.43 0.63 -23.57 16 9 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.70 -12.94 4.95 -54.93 -0.27 -13.21 16 14 C 0.50 8.69 5.65 -10.99 -0.06 8.63 16 15 O -0.54 -11.53 12.67 5.55 0.07 -11.46 16 16 C -0.13 -1.48 3.54 -90.14 -0.32 -1.80 16 17 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 18 C -0.14 -1.45 6.40 -26.74 -0.17 -1.62 16 19 C 0.52 7.52 7.97 -10.86 -0.09 7.43 16 20 O -0.50 -8.37 15.94 5.56 0.09 -8.28 16 21 N -0.52 -7.50 3.11 -116.20 -0.36 -7.86 16 22 C 0.28 4.21 7.90 -87.35 -0.69 3.52 16 23 N -0.51 -7.60 10.35 -15.12 -0.16 -7.76 16 24 C 0.07 0.81 11.34 -19.16 -0.22 0.59 16 25 C -0.31 -3.32 11.35 29.06 0.33 -2.99 16 26 S 0.19 2.57 21.15 -107.50 -2.27 0.30 16 27 C 0.12 1.50 6.43 -3.12 -0.02 1.48 16 28 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.77 5.65 -51.93 -0.29 0.47 16 31 H 0.10 2.58 5.95 -51.93 -0.31 2.28 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 34 H 0.39 5.98 8.54 -40.82 -0.35 5.63 16 35 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.12 1.39 7.84 -51.93 -0.41 0.99 16 37 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.11 1.70 7.02 -51.93 -0.36 1.33 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -32.74 344.42 -8.75 -41.49 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.02 Total: 6.37 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.62 Total: 3.65 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.16 Total: -52.39 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.16 Total: -19.74 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.27 Total: 0.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.74 -8.75 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364031395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.168 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds