Wall clock time and date at job start Tue Mar 31 2020 14:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47224 * 2 1 4 4 H 1.09004 * 109.82454 * 54.43165 * 3 2 1 5 5 C 1.54383 * 109.83278 * 175.41577 * 3 2 1 6 6 C 1.55411 * 102.31196 * 140.79725 * 5 3 2 7 7 C 1.54953 * 100.89457 * 325.99287 * 6 5 3 8 8 H 1.09003 * 110.30582 * 277.36049 * 7 6 5 9 9 C 1.50694 * 110.30899 * 155.28454 * 7 6 5 10 10 O 1.21280 * 120.00282 * 246.38695 * 9 7 6 11 11 N 1.34783 * 119.99905 * 66.39611 * 9 7 6 12 12 C 1.39149 * 119.99834 * 174.15491 * 11 9 7 13 13 C 1.38604 * 120.21142 * 335.20438 * 12 11 9 14 14 C 1.38197 * 120.17147 * 180.28554 * 13 12 11 15 15 C 1.38999 * 120.60184 * 359.70977 * 14 13 12 16 16 Cl 1.73596 * 119.79078 * 179.97438 * 15 14 13 17 17 C 1.37541 * 120.41913 * 359.97438 * 15 14 13 18 18 C 1.40740 * 119.81445 * 0.02562 * 17 15 14 19 19 C 1.41075 * 120.29392 * 180.02562 * 18 17 15 20 20 H 1.07993 * 119.99800 * 154.34779 * 19 18 17 21 21 C 1.39948 * 119.99823 * 334.34397 * 19 18 17 22 22 N 1.30858 * 120.00154 * 354.31957 * 21 19 18 23 23 Si 1.86801 * 119.99921 * 174.31924 * 21 19 18 24 24 H 1.48509 * 109.46931 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47044 * 299.99887 * 23 21 19 26 26 H 1.48502 * 109.47181 * 60.00010 * 23 21 19 27 27 O 1.43245 * 109.83057 * 293.54819 * 3 2 1 28 28 H 1.09001 * 109.47555 * 59.99568 * 1 2 3 29 29 H 1.09003 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47036 * 299.99832 * 1 2 3 31 31 H 1.09006 * 109.46711 * 240.00111 * 2 1 3 32 32 H 1.08994 * 109.47334 * 120.00155 * 2 1 3 33 33 H 1.08994 * 110.84601 * 259.06077 * 5 3 2 34 34 H 1.09001 * 110.84507 * 22.47522 * 5 3 2 35 35 H 1.08991 * 111.21316 * 208.06220 * 6 5 3 36 36 H 1.09002 * 111.08371 * 83.86604 * 6 5 3 37 37 H 0.96993 * 119.99951 * 354.14701 * 11 9 7 38 38 H 1.07998 * 119.91973 * 359.97438 * 13 12 11 39 39 H 1.08004 * 119.69716 * 179.69882 * 14 13 12 40 40 H 1.07998 * 120.09340 * 180.02562 * 17 15 14 41 41 H 0.97002 * 120.00265 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9898 0.8341 5 6 3.5794 1.4537 0.1161 6 6 3.9760 2.6067 -0.8476 7 6 2.8861 2.4636 -1.9397 8 1 3.1673 1.6914 -2.6558 9 6 2.6765 3.7787 -2.6450 10 8 1.6228 4.3678 -2.5291 11 7 3.6601 4.3001 -3.4048 12 6 3.4261 5.4501 -4.1526 13 6 2.1374 5.7770 -4.5445 14 6 1.9067 6.9161 -5.2921 15 6 2.9584 7.7495 -5.6549 16 17 2.6447 9.1747 -6.5950 17 6 4.2460 7.4520 -5.2737 18 6 4.5010 6.2963 -4.5121 19 6 5.8177 5.9818 -4.1152 20 1 5.9871 5.3824 -3.2330 21 6 6.9043 6.4464 -4.8648 22 7 6.6991 7.0771 -5.9929 23 14 8.6477 6.1664 -4.2550 24 1 9.6105 6.7496 -5.2236 25 1 8.8199 6.8179 -2.9318 26 1 8.8985 4.7084 -4.1253 27 8 1.6944 2.0801 -1.2353 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8898 1.6764 1.1369 34 1 4.0005 0.5053 -0.2174 35 1 4.9713 2.4490 -1.2628 36 1 3.9088 3.5742 -0.3500 37 1 4.5310 3.8739 -3.4303 38 1 1.3120 5.1372 -4.2691 39 1 0.9001 7.1609 -5.5975 40 1 5.0591 8.1034 -5.5582 41 1 7.4523 7.3988 -6.5126 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410970604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:15 Heat of formation + Delta-G solvation = -80.891049 kcal Electronic energy + Delta-G solvation = -24871.032651 eV Core-core repulsion = 21161.880678 eV Total energy + Delta-G solvation = -3709.151974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.33179 -38.94677 -37.21465 -35.43303 -33.91308 -33.73756 -33.55324 -32.16974 -29.81102 -29.34054 -27.74560 -25.51582 -24.34176 -22.16336 -21.79388 -21.23107 -20.56038 -19.44456 -17.70563 -17.38775 -16.93147 -16.06673 -15.69075 -15.33266 -14.68694 -14.43356 -14.41150 -14.15692 -13.69524 -13.32470 -13.09764 -13.06711 -12.93882 -12.61649 -12.26113 -11.95213 -11.91000 -11.65705 -11.52450 -11.49735 -11.26506 -11.09623 -11.03001 -10.89206 -10.81989 -10.56832 -10.39267 -10.26274 -9.78974 -9.65429 -9.45457 -9.17936 -8.74414 -7.58299 -7.03488 -6.73107 -4.58629 2.35645 2.71311 2.95830 2.96611 3.06571 3.22772 3.29584 3.39150 3.76989 4.08333 4.34361 4.45950 4.51089 4.82443 4.94308 4.97616 5.02592 5.21813 5.32861 5.34347 5.43423 5.55431 5.63496 5.69421 5.74812 5.80295 5.91925 6.10773 6.20240 6.27764 6.38879 6.69923 6.79383 6.92142 7.00324 7.04686 7.30504 7.51242 7.70408 7.86378 7.88648 8.23497 8.33741 8.62395 8.66275 8.86841 10.02743 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.003821 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.424009 B = 7325.904304 C = 9432.471169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.147 4.147 7 C 0.067 3.933 8 H 0.094 0.906 9 C 0.497 3.503 10 O -0.517 6.517 11 N -0.635 5.635 12 C 0.027 3.973 13 C -0.089 4.089 14 C -0.212 4.212 15 C -0.018 4.018 16 Cl -0.125 7.125 17 C -0.143 4.143 18 C 0.101 3.899 19 C -0.458 4.458 20 H 0.078 0.922 21 C 0.073 3.927 22 N -0.792 5.792 23 Si 0.915 3.085 24 H -0.277 1.277 25 H -0.264 1.264 26 H -0.265 1.265 27 O -0.345 6.345 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.405 0.595 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.149 0.851 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -10.986 8.509 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.098 0.902 5 C -0.187 4.187 6 C -0.185 4.185 7 C 0.005 3.995 8 H 0.111 0.889 9 C 0.282 3.718 10 O -0.393 6.393 11 N -0.279 5.279 12 C -0.067 4.067 13 C -0.109 4.109 14 C -0.233 4.233 15 C -0.044 4.044 16 Cl -0.096 7.096 17 C -0.164 4.164 18 C 0.097 3.903 19 C -0.488 4.488 20 H 0.096 0.904 21 C -0.145 4.145 22 N -0.418 5.418 23 Si 0.740 3.260 24 H -0.201 1.201 25 H -0.188 1.188 26 H -0.190 1.190 27 O -0.263 6.263 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.241 0.759 38 H 0.143 0.857 39 H 0.120 0.880 40 H 0.167 0.833 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.529 -10.354 8.254 13.329 hybrid contribution 1.447 -0.221 0.119 1.469 sum -0.081 -10.575 8.373 13.489 Atomic orbital electron populations 1.21712 0.95246 1.01214 1.02587 1.21902 0.97112 0.95693 1.02222 1.22865 0.94186 0.93458 0.87695 0.90151 1.23193 0.95298 0.99232 1.00932 1.23283 0.99052 1.00243 0.95934 1.22790 0.86363 0.94985 0.95328 0.88890 1.20347 0.84873 0.86746 0.79817 1.90649 1.26556 1.60796 1.61300 1.42843 1.14735 1.26672 1.43604 1.17819 0.94691 0.89918 1.04312 1.20694 0.95704 0.97105 0.97432 1.20203 0.96715 0.98313 1.08043 1.20808 0.95555 0.88712 0.99367 1.98251 1.96287 1.41903 1.73189 1.21454 0.93880 0.98382 1.02672 1.17255 0.91765 0.89007 0.92271 1.19283 0.89888 1.29629 1.09968 0.90397 1.25915 1.01809 0.92999 0.93811 1.69720 1.33953 1.27622 1.10474 0.86240 0.80512 0.79642 0.79628 1.20150 1.18841 1.18953 1.88560 1.27489 1.77657 1.32582 0.91734 0.93064 0.92901 0.91479 0.91168 0.89777 0.90126 0.88839 0.89545 0.75941 0.85718 0.87972 0.83340 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.82 37.16 0.36 -1.08 16 2 C -0.13 -1.19 5.50 -26.73 -0.15 -1.34 16 3 C 0.08 0.83 3.52 -26.01 -0.09 0.74 16 4 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.15 -1.32 6.55 -24.73 -0.16 -1.48 16 6 C -0.15 -1.62 6.57 -24.42 -0.16 -1.79 16 7 C 0.07 0.94 3.86 -26.86 -0.10 0.83 16 8 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 9 C 0.50 9.29 6.97 -10.99 -0.08 9.22 16 10 O -0.52 -11.77 13.71 -13.78 -0.19 -11.96 16 11 N -0.63 -12.22 5.08 -9.48 -0.05 -12.27 16 12 C 0.03 0.62 6.46 -83.18 -0.54 0.08 16 13 C -0.09 -2.10 8.70 -39.46 -0.34 -2.44 16 14 C -0.21 -4.92 9.82 -39.31 -0.39 -5.31 16 15 C -0.02 -0.42 6.31 -39.55 -0.25 -0.67 16 16 Cl -0.12 -2.60 28.94 -51.86 -1.50 -4.10 16 17 C -0.14 -3.59 8.47 -38.89 -0.33 -3.92 16 18 C 0.10 2.49 5.62 -106.65 -0.60 1.89 16 19 C -0.46 -10.70 8.41 -37.87 -0.32 -11.02 16 20 H 0.08 1.67 7.09 -52.49 -0.37 1.29 16 21 C 0.07 1.64 5.36 -17.33 -0.09 1.55 16 22 N -0.79 -18.93 10.39 55.55 0.58 -18.35 16 23 Si 0.92 16.93 29.56 -169.99 -5.03 11.90 16 24 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 25 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 26 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 27 O -0.34 -5.21 9.88 -54.57 -0.54 -5.75 16 28 H 0.06 0.74 7.88 -51.93 -0.41 0.33 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 37 H 0.40 6.78 7.54 -40.82 -0.31 6.47 16 38 H 0.13 2.95 5.78 -52.49 -0.30 2.64 16 39 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.15 3.87 5.77 -52.49 -0.30 3.56 16 41 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 LS Contribution 352.29 15.07 5.31 5.31 Total: -1.00 -28.44 352.29 -10.11 -38.55 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.46 Total: 11.38 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -3.23 Total: -14.72 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.53 Total: -30.62 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.73 Total: -17.71 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -1.50 Total: -4.10 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.44 -10.11 -38.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410970604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.339 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds