Wall clock time and date at job start Tue Mar 31 2020 14:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47060 * 2 1 4 4 H 1.08996 * 110.33386 * 52.74825 * 3 2 1 5 5 C 1.54478 * 110.37335 * 175.00320 * 3 2 1 6 6 C 1.54510 * 104.06703 * 142.91958 * 5 3 2 7 7 C 1.54479 * 104.05780 * 359.97438 * 6 5 3 8 8 H 1.08997 * 110.37264 * 94.96434 * 7 6 5 9 9 C 1.50701 * 110.36993 * 217.18844 * 7 6 5 10 10 O 1.21293 * 119.99775 * 115.00115 * 9 7 6 11 11 N 1.34773 * 120.00569 * 295.00394 * 9 7 6 12 12 C 1.39143 * 120.00479 * 174.84349 * 11 9 7 13 13 C 1.38606 * 120.21155 * 339.07598 * 12 11 9 14 14 C 1.38191 * 120.17583 * 179.72384 * 13 12 11 15 15 C 1.39004 * 120.59972 * 359.97438 * 14 13 12 16 16 Cl 1.73603 * 119.78850 * 180.02562 * 15 14 13 17 17 C 1.37547 * 120.42113 * 0.04369 * 15 14 13 18 18 C 1.40735 * 119.81043 * 359.95703 * 17 15 14 19 19 C 1.41071 * 120.29193 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00448 * 148.11465 * 19 18 17 21 21 C 1.39956 * 119.99681 * 328.10618 * 19 18 17 22 22 N 1.30857 * 120.00297 * 345.07328 * 21 19 18 23 23 Si 1.86804 * 119.99822 * 165.06638 * 21 19 18 24 24 H 1.48497 * 109.46991 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46904 * 120.00334 * 23 21 19 26 26 H 1.48502 * 109.47006 * 240.00353 * 23 21 19 27 27 O 1.44416 * 104.80747 * 336.02030 * 7 6 5 28 28 H 1.09010 * 109.47149 * 300.00273 * 1 2 3 29 29 H 1.08999 * 109.46939 * 60.00252 * 1 2 3 30 30 H 1.08998 * 109.47350 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47424 * 239.99963 * 2 1 3 32 32 H 1.08999 * 109.46939 * 119.99748 * 2 1 3 33 33 H 1.09005 * 110.51331 * 24.27181 * 5 3 2 34 34 H 1.09003 * 110.62792 * 261.62029 * 5 3 2 35 35 H 1.08998 * 110.51024 * 241.35460 * 6 5 3 36 36 H 1.08994 * 110.62822 * 118.69822 * 6 5 3 37 37 H 0.97010 * 119.99308 * 354.84346 * 11 9 7 38 38 H 1.07999 * 119.91680 * 359.75204 * 13 12 11 39 39 H 1.08001 * 119.70103 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.09290 * 179.97438 * 17 15 14 41 41 H 0.96998 * 120.00160 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0058 0.8135 5 6 3.5794 1.4687 0.1261 6 6 4.0105 2.6439 -0.7797 7 6 2.6805 3.1882 -1.3465 8 1 2.3223 4.0205 -0.7407 9 6 2.8590 3.6218 -2.7787 10 8 2.2707 3.0407 -3.6660 11 7 3.6724 4.6551 -3.0737 12 6 3.9215 4.9875 -4.4017 13 6 3.7180 4.0526 -5.4046 14 6 3.9601 4.3853 -6.7238 15 6 4.4088 5.6567 -7.0620 16 17 4.7057 6.0522 -8.7261 17 6 4.6193 6.6034 -6.0866 18 6 4.3783 6.2834 -4.7375 19 6 4.5903 7.2467 -3.7289 20 1 3.9767 7.2421 -2.8401 21 6 5.5960 8.2082 -3.8799 22 7 6.5207 8.0501 -4.7922 23 14 5.6180 9.7175 -2.7794 24 1 4.4721 9.6595 -1.8367 25 1 6.8887 9.7517 -2.0117 26 1 5.5111 10.9407 -3.6146 27 8 1.7632 2.0755 -1.2686 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0080 0.5328 -0.2325 34 1 3.8770 1.6531 1.1584 35 1 4.6521 2.2890 -1.5862 36 1 4.5201 3.4110 -0.1969 37 1 4.0842 5.1672 -2.3600 38 1 3.3688 3.0617 -5.1545 39 1 3.7986 3.6510 -7.4991 40 1 4.9684 7.5895 -6.3554 41 1 7.2175 8.7167 -4.8971 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410970605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:18 Heat of formation + Delta-G solvation = -80.696997 kcal Electronic energy + Delta-G solvation = -24832.303611 eV Core-core repulsion = 21123.160052 eV Total energy + Delta-G solvation = -3709.143559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32721 -38.94349 -37.22836 -35.47176 -33.86670 -33.79145 -33.59659 -32.11745 -29.87389 -29.36364 -27.73555 -25.49547 -24.36455 -22.13393 -21.78538 -21.11093 -20.85072 -19.47657 -17.62529 -17.12794 -16.71828 -16.40784 -15.64510 -15.50019 -14.85338 -14.56501 -14.24783 -13.82383 -13.72630 -13.46917 -13.32611 -13.17824 -12.95523 -12.50720 -12.22227 -11.92049 -11.82596 -11.72895 -11.58252 -11.52761 -11.30386 -11.07998 -10.98007 -10.84294 -10.75279 -10.55810 -10.47864 -10.29463 -9.89746 -9.66987 -9.36852 -9.26451 -8.74853 -7.60310 -7.06095 -6.78075 -4.56644 2.33612 2.68252 2.98589 3.01951 3.04540 3.17311 3.27820 3.37766 3.79732 4.11750 4.39814 4.45477 4.58931 4.78023 4.92599 4.96130 5.07433 5.15811 5.28327 5.36598 5.43985 5.51908 5.63780 5.67582 5.78559 5.86561 5.93323 6.01486 6.19086 6.25343 6.34894 6.64520 6.74577 6.80590 6.96082 6.98404 7.30884 7.44104 7.68002 7.72976 7.88381 8.20533 8.32476 8.59226 8.65727 8.83832 10.03993 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.003722 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.897779 B = 7521.236829 C = 9379.058759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.069 3.931 4 H 0.070 0.930 5 C -0.149 4.149 6 C -0.146 4.146 7 C 0.061 3.939 8 H 0.092 0.908 9 C 0.502 3.498 10 O -0.516 6.516 11 N -0.632 5.632 12 C 0.031 3.969 13 C -0.094 4.094 14 C -0.209 4.209 15 C -0.016 4.016 16 Cl -0.124 7.124 17 C -0.136 4.136 18 C 0.110 3.890 19 C -0.473 4.473 20 H 0.080 0.920 21 C 0.079 3.921 22 N -0.789 5.789 23 Si 0.908 3.092 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.271 1.271 27 O -0.337 6.337 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.407 0.593 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 -7.621 11.139 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.011 3.989 4 H 0.088 0.912 5 C -0.186 4.186 6 C -0.184 4.184 7 C -0.001 4.001 8 H 0.110 0.890 9 C 0.288 3.712 10 O -0.393 6.393 11 N -0.275 5.275 12 C -0.063 4.063 13 C -0.114 4.114 14 C -0.230 4.230 15 C -0.043 4.043 16 Cl -0.096 7.096 17 C -0.157 4.157 18 C 0.106 3.894 19 C -0.502 4.502 20 H 0.098 0.902 21 C -0.140 4.140 22 N -0.413 5.413 23 Si 0.732 3.268 24 H -0.184 1.184 25 H -0.199 1.199 26 H -0.196 1.196 27 O -0.256 6.256 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.243 0.757 38 H 0.151 0.849 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.273 -7.994 10.156 13.333 hybrid contribution 0.595 1.217 0.787 1.567 sum -2.678 -6.778 10.943 13.147 Atomic orbital electron populations 1.21744 0.95251 1.01517 1.02409 1.21571 0.96811 0.94299 1.02688 1.23122 0.94143 0.94593 0.87005 0.91244 1.22989 0.95900 0.99372 1.00375 1.22919 0.96874 0.98520 1.00084 1.22791 0.90691 0.91787 0.94821 0.89043 1.20104 0.79836 0.81352 0.89952 1.90619 1.46171 1.54693 1.47780 1.42821 1.45555 1.31167 1.07967 1.17869 1.12302 0.93949 0.82203 1.20937 1.00152 0.99142 0.91218 1.20216 1.11625 0.95319 0.95834 1.20764 1.05129 0.96001 0.82411 1.98255 1.95148 1.94569 1.21595 1.20916 1.05441 0.98746 0.90566 1.17180 0.90985 0.88933 0.92280 1.19269 1.15287 1.11150 1.04517 0.90165 1.25853 0.93982 0.98633 0.95497 1.69799 1.09311 1.33175 1.29048 0.86262 0.79098 0.81060 0.80369 1.18402 1.19925 1.19591 1.89289 1.56821 1.42564 1.36880 0.92967 0.91727 0.92816 0.90872 0.90793 0.90341 0.90304 0.89904 0.89461 0.75715 0.84905 0.87844 0.85597 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.85 37.16 0.37 -1.06 16 2 C -0.12 -1.09 5.56 -26.73 -0.15 -1.24 16 3 C 0.07 0.74 3.24 -25.95 -0.08 0.66 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.15 -1.39 6.63 -25.16 -0.17 -1.56 16 6 C -0.15 -1.64 6.61 -25.16 -0.17 -1.81 16 7 C 0.06 0.86 3.71 -27.11 -0.10 0.76 16 8 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 9 C 0.50 9.38 6.92 -10.99 -0.08 9.31 16 10 O -0.52 -11.65 13.49 -13.67 -0.18 -11.84 16 11 N -0.63 -12.18 5.14 -9.48 -0.05 -12.23 16 12 C 0.03 0.72 6.52 -83.18 -0.54 0.18 16 13 C -0.09 -2.20 8.74 -39.46 -0.35 -2.55 16 14 C -0.21 -4.81 9.82 -39.31 -0.39 -5.19 16 15 C -0.02 -0.38 6.31 -39.55 -0.25 -0.63 16 16 Cl -0.12 -2.56 28.94 -51.86 -1.50 -4.06 16 17 C -0.14 -3.38 8.40 -38.89 -0.33 -3.71 16 18 C 0.11 2.71 5.50 -106.66 -0.59 2.12 16 19 C -0.47 -11.10 8.23 -37.87 -0.31 -11.41 16 20 H 0.08 1.76 7.29 -52.49 -0.38 1.38 16 21 C 0.08 1.81 5.15 -17.32 -0.09 1.72 16 22 N -0.79 -18.98 11.30 55.55 0.63 -18.36 16 23 Si 0.91 17.10 29.59 -169.99 -5.03 12.07 16 24 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 25 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 26 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 27 O -0.34 -5.12 10.40 -54.45 -0.57 -5.69 16 28 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.74 8.01 -51.93 -0.42 0.32 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.41 6.90 7.50 -40.82 -0.31 6.59 16 38 H 0.13 3.11 5.49 -52.49 -0.29 2.83 16 39 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.13 3.24 6.62 -52.49 -0.35 2.90 16 41 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 LS Contribution 353.51 15.07 5.33 5.33 Total: -1.00 -28.44 353.51 -10.08 -38.53 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.50 Total: 10.66 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -3.21 Total: -14.42 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.58 Total: -30.59 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.75 Total: -17.52 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -1.50 Total: -4.06 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.44 -10.08 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410970605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.170 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds