Wall clock time and date at job start Tue Mar 31 2020 14:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47060 * 2 1 4 4 H 1.08996 * 110.33386 * 52.74825 * 3 2 1 5 5 C 1.54478 * 110.37335 * 175.00320 * 3 2 1 6 6 C 1.54510 * 104.06703 * 142.91958 * 5 3 2 7 7 C 1.54479 * 104.05780 * 359.97438 * 6 5 3 8 8 H 1.08997 * 110.37264 * 94.96434 * 7 6 5 9 9 C 1.50701 * 110.36993 * 217.18844 * 7 6 5 10 10 O 1.21293 * 119.99775 * 115.00115 * 9 7 6 11 11 N 1.34773 * 120.00569 * 295.00394 * 9 7 6 12 12 C 1.39143 * 120.00479 * 174.84349 * 11 9 7 13 13 C 1.38606 * 120.21155 * 339.07598 * 12 11 9 14 14 C 1.38191 * 120.17583 * 179.72384 * 13 12 11 15 15 C 1.39004 * 120.59972 * 359.97438 * 14 13 12 16 16 Cl 1.73603 * 119.78850 * 180.02562 * 15 14 13 17 17 C 1.37547 * 120.42113 * 0.04369 * 15 14 13 18 18 C 1.40735 * 119.81043 * 359.95703 * 17 15 14 19 19 C 1.41071 * 120.29193 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00448 * 148.11465 * 19 18 17 21 21 C 1.39956 * 119.99681 * 328.10618 * 19 18 17 22 22 N 1.30857 * 120.00297 * 345.07328 * 21 19 18 23 23 Si 1.86804 * 119.99822 * 165.06638 * 21 19 18 24 24 H 1.48497 * 109.46991 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46904 * 120.00334 * 23 21 19 26 26 H 1.48502 * 109.47006 * 240.00353 * 23 21 19 27 27 O 1.44416 * 104.80747 * 336.02030 * 7 6 5 28 28 H 1.09010 * 109.47149 * 300.00273 * 1 2 3 29 29 H 1.08999 * 109.46939 * 60.00252 * 1 2 3 30 30 H 1.08998 * 109.47350 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47424 * 239.99963 * 2 1 3 32 32 H 1.08999 * 109.46939 * 119.99748 * 2 1 3 33 33 H 1.09005 * 110.51331 * 24.27181 * 5 3 2 34 34 H 1.09003 * 110.62792 * 261.62029 * 5 3 2 35 35 H 1.08998 * 110.51024 * 241.35460 * 6 5 3 36 36 H 1.08994 * 110.62822 * 118.69822 * 6 5 3 37 37 H 0.97010 * 119.99308 * 354.84346 * 11 9 7 38 38 H 1.07999 * 119.91680 * 359.75204 * 13 12 11 39 39 H 1.08001 * 119.70103 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.09290 * 179.97438 * 17 15 14 41 41 H 0.96998 * 120.00160 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0058 0.8135 5 6 3.5794 1.4687 0.1261 6 6 4.0105 2.6439 -0.7797 7 6 2.6805 3.1882 -1.3465 8 1 2.3223 4.0205 -0.7407 9 6 2.8590 3.6218 -2.7787 10 8 2.2707 3.0407 -3.6660 11 7 3.6724 4.6551 -3.0737 12 6 3.9215 4.9875 -4.4017 13 6 3.7180 4.0526 -5.4046 14 6 3.9601 4.3853 -6.7238 15 6 4.4088 5.6567 -7.0620 16 17 4.7057 6.0522 -8.7261 17 6 4.6193 6.6034 -6.0866 18 6 4.3783 6.2834 -4.7375 19 6 4.5903 7.2467 -3.7289 20 1 3.9767 7.2421 -2.8401 21 6 5.5960 8.2082 -3.8799 22 7 6.5207 8.0501 -4.7922 23 14 5.6180 9.7175 -2.7794 24 1 4.4721 9.6595 -1.8367 25 1 6.8887 9.7517 -2.0117 26 1 5.5111 10.9407 -3.6146 27 8 1.7632 2.0755 -1.2686 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0080 0.5328 -0.2325 34 1 3.8770 1.6531 1.1584 35 1 4.6521 2.2890 -1.5862 36 1 4.5201 3.4110 -0.1969 37 1 4.0842 5.1672 -2.3600 38 1 3.3688 3.0617 -5.1545 39 1 3.7986 3.6510 -7.4991 40 1 4.9684 7.5895 -6.3554 41 1 7.2175 8.7167 -4.8971 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410970605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:17 Heat of formation + Delta-G solvation = -95.131752 kcal Electronic energy + Delta-G solvation = -24832.929549 eV Core-core repulsion = 21123.160052 eV Total energy + Delta-G solvation = -3709.769497 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66450 -40.24456 -38.88618 -37.20988 -35.55874 -35.39414 -34.54521 -33.08276 -31.68232 -30.73182 -29.08327 -27.22535 -25.44764 -23.65809 -22.92370 -22.44734 -21.93473 -21.00922 -19.36123 -18.66920 -17.98414 -17.49912 -17.20206 -16.77407 -16.40030 -16.08684 -15.56265 -15.15335 -14.86882 -14.64849 -14.54593 -14.42985 -14.17272 -14.04153 -13.89992 -13.47164 -13.25530 -12.93148 -12.82838 -12.68100 -12.59925 -12.36192 -12.28383 -12.19319 -11.93958 -11.84799 -11.69927 -11.50455 -11.41725 -11.07452 -10.96342 -10.83188 -10.34727 -9.46185 -8.81878 -8.53153 -6.38374 0.59168 0.89890 1.44913 1.48827 1.52761 1.58796 1.68317 2.01750 2.22002 2.69434 3.07122 3.48583 3.54354 3.63746 3.90670 3.94596 4.16274 4.20084 4.34274 4.39460 4.46537 4.51927 4.59845 4.76756 4.89818 4.93322 4.95226 4.96598 5.03515 5.09177 5.16360 5.19055 5.21892 5.24668 5.44113 5.51235 5.63066 5.83175 5.85614 5.95863 6.09633 6.44638 6.67449 6.81451 6.89732 7.29828 8.33318 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.003722 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.897779 B = 7521.236829 C = 9379.058759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.061 3.939 4 H 0.089 0.911 5 C -0.141 4.141 6 C -0.143 4.143 7 C 0.065 3.935 8 H 0.120 0.880 9 C 0.499 3.501 10 O -0.561 6.561 11 N -0.626 5.626 12 C 0.028 3.972 13 C -0.107 4.107 14 C -0.216 4.216 15 C -0.024 4.024 16 Cl -0.102 7.102 17 C -0.157 4.157 18 C 0.088 3.912 19 C -0.488 4.488 20 H 0.093 0.907 21 C 0.042 3.958 22 N -0.821 5.821 23 Si 0.981 3.019 24 H -0.251 1.251 25 H -0.266 1.266 26 H -0.275 1.275 27 O -0.374 6.374 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.418 0.582 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.705 -7.369 14.064 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C 0.004 3.996 4 H 0.107 0.893 5 C -0.178 4.178 6 C -0.181 4.181 7 C 0.004 3.996 8 H 0.137 0.863 9 C 0.287 3.713 10 O -0.440 6.440 11 N -0.270 5.270 12 C -0.068 4.068 13 C -0.127 4.127 14 C -0.236 4.236 15 C -0.051 4.051 16 Cl -0.074 7.074 17 C -0.178 4.178 18 C 0.084 3.916 19 C -0.517 4.517 20 H 0.111 0.889 21 C -0.174 4.174 22 N -0.447 5.447 23 Si 0.802 3.198 24 H -0.174 1.174 25 H -0.191 1.191 26 H -0.200 1.200 27 O -0.293 6.293 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.256 0.744 38 H 0.147 0.853 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.040 -7.756 13.106 15.530 hybrid contribution 0.503 1.076 -0.174 1.200 sum -2.537 -6.680 12.932 14.775 Atomic orbital electron populations 1.21735 0.95475 1.02041 1.01597 1.21625 0.96644 0.93838 1.03230 1.23440 0.95387 0.95066 0.85689 0.89313 1.23003 0.94661 0.98443 1.01704 1.22964 0.95055 1.00047 1.00055 1.22857 0.92543 0.92783 0.91370 0.86253 1.21050 0.78298 0.80077 0.91867 1.90587 1.47773 1.55860 1.49767 1.42799 1.45742 1.31609 1.06858 1.17999 1.11380 0.93479 0.83920 1.21049 1.00659 0.99226 0.91783 1.20415 1.11431 0.95565 0.96212 1.20835 1.04848 0.95914 0.83495 1.98247 1.95014 1.94472 1.19656 1.20886 1.07036 0.98495 0.91406 1.17497 0.91584 0.89867 0.92681 1.19555 1.15760 1.11563 1.04784 0.88915 1.26688 0.93090 1.00986 0.96655 1.69867 1.09979 1.34299 1.30512 0.85164 0.79537 0.76700 0.78430 1.17411 1.19085 1.19987 1.89272 1.57401 1.43173 1.39471 0.91609 0.94622 0.91699 0.92664 0.87813 0.90402 0.87035 0.91991 0.86641 0.74376 0.85294 0.86356 0.87091 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.85 71.98 0.71 -1.94 16 2 C -0.12 -1.97 5.56 30.59 0.17 -1.80 16 3 C 0.06 1.16 3.24 31.10 0.10 1.26 16 4 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 5 C -0.14 -2.19 6.63 31.61 0.21 -1.98 16 6 C -0.14 -2.90 6.61 31.61 0.21 -2.69 16 7 C 0.07 1.76 3.71 30.35 0.11 1.87 16 8 H 0.12 2.53 8.14 -2.39 -0.02 2.52 16 9 C 0.50 18.74 6.92 87.66 0.61 19.35 16 10 O -0.56 -26.09 13.49 15.31 0.21 -25.88 16 11 N -0.63 -24.17 5.14 -302.30 -1.56 -25.72 16 12 C 0.03 1.30 6.52 38.86 0.25 1.55 16 13 C -0.11 -5.13 8.74 22.35 0.20 -4.94 16 14 C -0.22 -10.11 9.82 22.44 0.22 -9.89 16 15 C -0.02 -1.15 6.31 22.29 0.14 -1.01 16 16 Cl -0.10 -4.23 28.94 -2.72 -0.08 -4.31 16 17 C -0.16 -8.04 8.40 22.72 0.19 -7.85 16 18 C 0.09 4.40 5.50 -21.18 -0.12 4.28 16 19 C -0.49 -22.83 8.23 23.38 0.19 -22.63 16 20 H 0.09 3.97 7.29 -2.91 -0.02 3.95 16 21 C 0.04 1.90 5.15 85.25 0.44 2.34 16 22 N -0.82 -39.77 11.30 21.83 0.25 -39.52 16 23 Si 0.98 34.09 29.59 68.60 2.03 36.12 16 24 H -0.25 -8.28 7.11 99.48 0.71 -7.57 16 25 H -0.27 -8.87 7.11 99.48 0.71 -8.16 16 26 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 27 O -0.37 -11.09 10.40 -130.60 -1.36 -12.45 16 28 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.03 0.82 8.01 -2.39 -0.02 0.80 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.23 7.87 -2.38 -0.02 1.21 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.52 7.86 -2.39 -0.02 1.50 16 36 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.42 13.85 7.50 -92.70 -0.70 13.16 16 38 H 0.13 6.28 5.49 -2.91 -0.02 6.27 16 39 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 40 H 0.11 5.91 6.62 -2.91 -0.02 5.89 16 41 H 0.29 12.78 8.30 -92.71 -0.77 12.01 16 Total: -1.00 -63.55 353.51 3.49 -60.07 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.36 Total: 35.76 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 3.63 Total: -24.07 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -1.31 Total: -65.24 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -1.15 Total: -38.33 kcal Atomic # 14 Polarization: 34.09 SS G_CDS: 2.03 Total: 36.12 kcal Atomic # 17 Polarization: -4.23 SS G_CDS: -0.08 Total: -4.31 kcal Total: -63.55 3.49 -60.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410970605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.066 kcal (2) G-P(sol) polarization free energy of solvation -63.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds