Wall clock time and date at job start Tue Mar 31 2020 14:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46748 * 2 1 4 4 H 1.08996 * 109.82608 * 305.88217 * 3 2 1 5 5 C 1.54387 * 109.82817 * 184.99756 * 3 2 1 6 6 C 1.55306 * 102.25427 * 219.04098 * 5 3 2 7 7 C 1.54941 * 100.94004 * 34.12945 * 6 5 3 8 8 H 1.09010 * 110.30665 * 82.57304 * 7 6 5 9 9 C 1.50702 * 110.30966 * 204.63593 * 7 6 5 10 10 O 1.21287 * 119.99630 * 113.61503 * 9 7 6 11 11 N 1.34772 * 120.00648 * 293.61638 * 9 7 6 12 12 C 1.39147 * 120.00229 * 176.07000 * 11 9 7 13 13 C 1.38607 * 120.20998 * 34.58460 * 12 11 9 14 14 C 1.38190 * 120.17266 * 179.97438 * 13 12 11 15 15 C 1.39005 * 120.60226 * 359.97438 * 14 13 12 16 16 Cl 1.73604 * 119.78803 * 179.97438 * 15 14 13 17 17 C 1.37541 * 120.42066 * 0.02562 * 15 14 13 18 18 C 1.40745 * 119.81317 * 359.73853 * 17 15 14 19 19 C 1.41066 * 120.29378 * 180.25688 * 18 17 15 20 20 H 1.08003 * 119.99858 * 214.94795 * 19 18 17 21 21 C 1.39952 * 120.00092 * 34.95430 * 19 18 17 22 22 N 1.30855 * 119.99949 * 355.63374 * 21 19 18 23 23 Si 1.86793 * 120.00058 * 175.63450 * 21 19 18 24 24 H 1.48502 * 109.47298 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47302 * 119.99989 * 23 21 19 26 26 H 1.48499 * 109.47232 * 239.99792 * 23 21 19 27 27 O 1.43382 * 109.82746 * 66.84314 * 3 2 1 28 28 H 1.08999 * 109.46976 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47385 * 299.99886 * 1 2 3 30 30 H 1.09008 * 109.47205 * 60.00174 * 1 2 3 31 31 H 1.08998 * 109.47385 * 240.00113 * 2 1 3 32 32 H 1.08995 * 109.47232 * 119.99607 * 2 1 3 33 33 H 1.09001 * 110.84709 * 100.84592 * 5 3 2 34 34 H 1.09001 * 111.02441 * 337.31141 * 5 3 2 35 35 H 1.09001 * 111.12357 * 276.21422 * 6 5 3 36 36 H 1.08995 * 111.16444 * 152.07211 * 6 5 3 37 37 H 0.96998 * 119.99717 * 355.79868 * 11 9 7 38 38 H 1.08001 * 119.91619 * 359.95461 * 13 12 11 39 39 H 1.07995 * 119.69837 * 179.97438 * 14 13 12 40 40 H 1.08003 * 120.09799 * 179.97438 * 17 15 14 41 41 H 0.96994 * 120.00251 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9914 -0.8308 5 6 3.5785 1.4541 -0.1265 6 6 3.9796 2.6070 0.8336 7 6 2.8991 2.4621 1.9346 8 1 3.1871 1.6898 2.6480 9 6 2.6941 3.7766 2.6426 10 8 1.6388 4.3647 2.5358 11 7 3.6834 4.2987 3.3943 12 6 3.5248 5.5503 3.9813 13 6 2.2788 5.9556 4.4336 14 6 2.1222 7.1986 5.0169 15 6 3.2074 8.0558 5.1580 16 17 2.9865 9.6128 5.8934 17 6 4.4547 7.6786 4.7179 18 6 4.6351 6.4146 4.1257 19 6 5.9111 6.0153 3.6757 20 1 6.0043 5.4025 2.7912 21 6 7.0560 6.4129 4.3754 22 7 6.9499 7.2246 5.3963 23 14 8.7356 5.7850 3.8520 24 1 8.5849 4.8870 2.6789 25 1 9.6024 6.9345 3.4880 26 1 9.3548 5.0338 4.9735 27 8 1.7019 2.0778 1.2401 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 3.8820 1.6776 -1.1493 34 1 4.0053 0.5073 0.2047 35 1 3.9072 3.5748 0.3372 36 1 4.9786 2.4508 1.2405 37 1 4.5045 3.8002 3.5294 38 1 1.4281 5.2985 4.3296 39 1 1.1479 7.5068 5.3662 40 1 5.2941 8.3489 4.8299 41 1 7.7435 7.5005 5.8811 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410970606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:21 Heat of formation + Delta-G solvation = -83.389420 kcal Electronic energy + Delta-G solvation = -24914.295335 eV Core-core repulsion = 21205.035024 eV Total energy + Delta-G solvation = -3709.260311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29996 -38.91514 -37.22604 -35.45462 -33.85441 -33.71559 -33.54772 -32.15357 -29.82328 -29.34251 -27.76200 -25.48337 -24.32831 -22.13256 -21.75160 -21.22114 -20.56524 -19.47646 -17.68828 -17.36730 -16.92377 -15.98929 -15.67979 -15.33369 -14.69803 -14.53065 -14.35932 -14.16327 -13.71875 -13.31702 -13.07745 -12.98684 -12.92183 -12.62169 -12.28886 -11.95776 -11.91154 -11.61706 -11.53138 -11.50230 -11.27843 -11.07793 -11.02198 -10.90287 -10.80654 -10.52149 -10.43538 -10.22195 -9.78737 -9.68535 -9.40495 -9.10936 -8.79895 -7.52347 -7.04424 -6.74445 -4.61242 2.35613 2.70647 2.97091 3.00161 3.04616 3.20544 3.26579 3.36697 3.80231 4.10767 4.37410 4.47827 4.52547 4.84442 4.95647 4.98912 5.04236 5.22809 5.32442 5.34144 5.38796 5.58124 5.64824 5.73202 5.75847 5.80696 5.94882 6.12012 6.20301 6.23978 6.33869 6.72292 6.79416 6.92685 6.99646 7.06381 7.31494 7.48188 7.69393 7.82701 7.89425 8.22590 8.34104 8.62301 8.68986 8.87872 10.09010 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.003911 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.706983 B = 7158.069318 C = 9264.288453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.076 3.924 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.145 4.145 7 C 0.067 3.933 8 H 0.092 0.908 9 C 0.499 3.501 10 O -0.519 6.519 11 N -0.636 5.636 12 C 0.031 3.969 13 C -0.083 4.083 14 C -0.207 4.207 15 C -0.019 4.019 16 Cl -0.123 7.123 17 C -0.132 4.132 18 C 0.104 3.896 19 C -0.465 4.465 20 H 0.080 0.920 21 C 0.073 3.927 22 N -0.800 5.800 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.273 1.273 27 O -0.345 6.345 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.404 0.596 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 -11.423 -7.465 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.099 0.901 5 C -0.187 4.187 6 C -0.183 4.183 7 C 0.005 3.995 8 H 0.110 0.890 9 C 0.284 3.716 10 O -0.394 6.394 11 N -0.280 5.280 12 C -0.063 4.063 13 C -0.104 4.104 14 C -0.228 4.228 15 C -0.045 4.045 16 Cl -0.095 7.095 17 C -0.153 4.153 18 C 0.100 3.900 19 C -0.496 4.496 20 H 0.098 0.902 21 C -0.144 4.144 22 N -0.426 5.426 23 Si 0.740 3.260 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.198 1.198 27 O -0.263 6.263 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.240 0.760 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.161 0.839 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.210 -10.753 -7.270 13.167 hybrid contribution 1.430 -0.363 -0.028 1.476 sum -0.779 -11.117 -7.298 13.321 Atomic orbital electron populations 1.21715 0.95265 1.01202 1.02575 1.21897 0.97084 0.95697 1.02222 1.22882 0.94274 0.93464 0.87583 0.90149 1.23178 0.95251 0.99254 1.00994 1.23243 0.99101 1.00217 0.95778 1.22768 0.86344 0.94938 0.95401 0.89029 1.20380 0.84742 0.86775 0.79659 1.90675 1.25872 1.61148 1.61742 1.42773 1.18814 1.18230 1.48205 1.17853 0.95599 0.86096 1.06748 1.20604 0.96273 0.96026 0.97451 1.20229 0.96807 0.95589 1.10135 1.20837 0.95988 0.85517 1.02205 1.98256 1.97648 1.31008 1.82566 1.21371 0.94354 0.96879 1.02689 1.17319 0.91730 0.88920 0.92023 1.19312 0.89800 1.29604 1.10866 0.90238 1.25893 1.01255 0.93382 0.93876 1.69742 1.31693 1.25587 1.15559 0.86144 0.80964 0.79477 0.79441 1.18549 1.19819 1.19847 1.88587 1.27394 1.77774 1.32569 0.93072 0.91751 0.92901 0.91161 0.91483 0.89776 0.90142 0.89532 0.88816 0.76001 0.86269 0.87856 0.83910 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.83 37.16 0.37 -1.08 16 2 C -0.13 -1.20 5.51 -26.73 -0.15 -1.35 16 3 C 0.08 0.84 3.51 -26.00 -0.09 0.75 16 4 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.15 -1.36 6.54 -24.78 -0.16 -1.52 16 6 C -0.15 -1.67 6.56 -24.48 -0.16 -1.83 16 7 C 0.07 0.94 3.86 -26.86 -0.10 0.84 16 8 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 9 C 0.50 9.34 7.01 -10.99 -0.08 9.26 16 10 O -0.52 -11.82 13.96 -13.79 -0.19 -12.02 16 11 N -0.64 -12.16 4.95 -9.48 -0.05 -12.21 16 12 C 0.03 0.71 6.33 -83.18 -0.53 0.18 16 13 C -0.08 -1.93 8.68 -39.46 -0.34 -2.28 16 14 C -0.21 -4.73 9.82 -39.31 -0.39 -5.12 16 15 C -0.02 -0.44 6.31 -39.55 -0.25 -0.69 16 16 Cl -0.12 -2.54 28.94 -51.86 -1.50 -4.04 16 17 C -0.13 -3.29 8.43 -38.89 -0.33 -3.62 16 18 C 0.10 2.55 5.56 -106.65 -0.59 1.96 16 19 C -0.47 -10.89 8.22 -37.87 -0.31 -11.20 16 20 H 0.08 1.74 7.63 -52.48 -0.40 1.34 16 21 C 0.07 1.66 5.42 -17.33 -0.09 1.57 16 22 N -0.80 -19.23 10.62 55.55 0.59 -18.64 16 23 Si 0.92 17.03 29.56 -169.99 -5.03 12.00 16 24 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 25 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 27 O -0.34 -5.24 9.91 -54.57 -0.54 -5.78 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.74 7.89 -51.93 -0.41 0.33 16 30 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 35 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.40 6.72 8.10 -40.82 -0.33 6.39 16 38 H 0.12 2.76 6.19 -52.49 -0.32 2.44 16 39 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.14 3.71 6.16 -52.48 -0.32 3.39 16 41 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -28.41 354.21 -10.14 -38.55 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.55 Total: 10.92 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -3.21 Total: -14.12 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.54 Total: -30.85 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.73 Total: -17.80 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -1.50 Total: -4.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.41 -10.14 -38.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410970606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.839 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds