Wall clock time and date at job start Tue Mar 31 2020 14:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47369 * 2 1 4 4 C 1.50701 * 109.47335 * 239.99949 * 2 1 3 5 5 H 1.07999 * 120.00406 * 240.00279 * 4 2 1 6 6 C 1.37879 * 120.00112 * 59.99380 * 4 2 1 7 7 N 1.31520 * 119.99790 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00215 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47139 * 90.00760 * 8 6 4 10 10 H 1.48502 * 109.47156 * 210.00502 * 8 6 4 11 11 H 1.48499 * 109.47192 * 330.00096 * 8 6 4 12 12 C 1.53004 * 109.47078 * 119.99949 * 2 1 3 13 13 N 1.46499 * 109.47094 * 299.99903 * 12 2 1 14 14 S 1.65597 * 119.99926 * 165.27799 * 13 12 2 15 15 O 1.42096 * 106.40195 * 178.26439 * 14 13 12 16 16 O 1.42108 * 106.40105 * 311.18495 * 14 13 12 17 17 C 1.76199 * 107.22117 * 64.72196 * 14 13 12 18 18 C 1.34227 * 126.56783 * 114.68768 * 17 14 13 19 19 N 1.36917 * 109.91220 * 179.89718 * 18 17 14 20 20 H 0.97005 * 124.98423 * 180.14214 * 19 18 17 21 21 C 1.37422 * 110.02785 * 0.38308 * 19 18 17 22 22 N 1.32651 * 133.19523 * 179.75600 * 21 19 18 23 23 C 1.31589 * 121.66913 * 180.02562 * 22 21 19 24 24 C 1.38669 * 121.58590 * 0.02562 * 23 22 21 25 25 C 1.38198 * 119.40641 * 359.96584 * 24 23 22 26 26 C 1.39695 * 118.04306 * 0.02562 * 25 24 23 27 27 H 1.09005 * 109.46768 * 300.00045 * 1 2 3 28 28 H 1.08998 * 109.46906 * 59.99946 * 1 2 3 29 29 H 1.08995 * 109.47092 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47073 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46733 * 300.00216 * 3 2 1 32 32 H 1.08996 * 109.47023 * 59.99631 * 3 2 1 33 33 H 0.96996 * 120.00150 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.47007 * 179.97438 * 12 2 1 35 35 H 1.08995 * 109.47080 * 60.00089 * 12 2 1 36 36 H 0.97001 * 119.99790 * 344.99588 * 13 12 2 37 37 H 1.07998 * 125.04389 * 0.03109 * 18 17 14 38 38 H 1.08004 * 119.20672 * 179.97438 * 23 22 21 39 39 H 1.07996 * 120.29382 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.97706 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4454 14 16 1.6320 -0.7754 3.9223 15 8 1.1264 0.1557 4.8692 16 8 1.0889 -2.0767 3.7455 17 6 3.3381 -0.9959 4.3033 18 6 4.0148 -0.4157 5.3068 19 7 5.3199 -0.8292 5.2895 20 1 6.0014 -0.5464 5.9192 21 6 5.5240 -1.6996 4.2458 22 7 6.5886 -2.3591 3.8084 23 6 6.5274 -3.1524 2.7603 24 6 5.3460 -3.3390 2.0587 25 6 4.2028 -2.6786 2.4669 26 6 4.2905 -1.8417 3.5820 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7093 1.1616 -3.4844 34 1 3.1301 -0.7217 1.2490 35 1 1.6767 -1.7489 1.2493 36 1 1.1851 0.8645 2.3729 37 1 3.5921 0.2733 6.0230 38 1 7.4190 -3.6699 2.4383 39 1 5.3196 -3.9948 1.2010 40 1 3.2690 -2.8057 1.9394 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416534332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:47 Heat of formation + Delta-G solvation = -28.878701 kcal Electronic energy + Delta-G solvation = -25907.438770 eV Core-core repulsion = 22234.878679 eV Total energy + Delta-G solvation = -3672.560092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64085 -38.99200 -38.60476 -38.08982 -36.85313 -34.92239 -34.08168 -32.28897 -31.29975 -30.44446 -27.49018 -27.37632 -26.26427 -24.83248 -23.71455 -23.19466 -20.73571 -20.00785 -19.66048 -18.70011 -17.98189 -17.55395 -17.32580 -17.03356 -16.69498 -16.47182 -16.16037 -15.66789 -15.47572 -15.04957 -14.84446 -14.42168 -14.15582 -13.78476 -13.50040 -13.33249 -13.27804 -13.20163 -13.12781 -13.05498 -12.86130 -12.71902 -12.49116 -12.41023 -12.22139 -12.04743 -11.67591 -11.42944 -11.06549 -10.63489 -10.52782 -10.37176 -10.19615 -9.65074 -9.53259 -7.94512 -6.10225 -0.45297 -0.18030 0.25085 1.03558 1.47179 1.50322 1.57188 1.61003 2.24525 2.51752 2.76239 2.83979 3.28942 3.29813 3.46293 3.74890 3.82622 4.04042 4.14999 4.28471 4.30996 4.50225 4.59066 4.77278 4.80439 4.86307 5.09926 5.11909 5.15681 5.16646 5.26241 5.28018 5.30666 5.55650 5.74280 5.74650 5.74900 6.15703 6.18929 6.22774 6.32612 6.50950 6.88679 6.96333 7.57250 9.04418 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.005042 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.248434 B = 5551.475141 C = 6996.452261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.054 3.946 3 C -0.123 4.123 4 C -0.521 4.521 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.903 5.903 8 Si 0.943 3.057 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.268 1.268 12 C 0.143 3.857 13 N -1.107 6.107 14 S 2.738 3.262 15 O -0.985 6.985 16 O -0.995 6.995 17 C -0.775 4.775 18 C 0.230 3.770 19 N -0.554 5.554 20 H 0.442 0.558 21 C 0.258 3.742 22 N -0.506 5.506 23 C 0.132 3.868 24 C -0.179 4.179 25 C -0.065 4.065 26 C -0.104 4.104 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.019 0.981 30 H 0.023 0.977 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.257 0.743 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.420 0.580 37 H 0.241 0.759 38 H 0.201 0.799 39 H 0.168 0.832 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.879 -2.757 14.432 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 C -0.181 4.181 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.175 4.175 7 N -0.543 5.543 8 Si 0.770 3.230 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.193 1.193 12 C 0.017 3.983 13 N -0.869 5.869 14 S 2.829 3.171 15 O -0.975 6.975 16 O -0.985 6.985 17 C -0.872 4.872 18 C 0.094 3.906 19 N -0.160 5.160 20 H 0.285 0.715 21 C 0.025 3.975 22 N -0.220 5.220 23 C -0.033 4.033 24 C -0.199 4.199 25 C -0.091 4.091 26 C -0.111 4.111 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.257 0.743 37 H 0.258 0.742 38 H 0.218 0.782 39 H 0.186 0.814 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.089 -2.921 15.392 18.635 hybrid contribution 0.132 0.063 -1.531 1.538 sum 10.221 -2.858 13.861 17.458 Atomic orbital electron populations 1.21718 0.98003 0.98667 1.00026 1.18307 0.92692 0.93024 0.90749 1.21683 0.98093 0.98198 1.00125 1.21349 1.31314 1.12144 0.91169 0.92550 1.25496 0.95307 0.95580 1.01119 1.69945 1.37413 1.23596 1.23305 0.85793 0.78913 0.78345 0.79959 1.20796 1.21574 1.19250 1.21432 0.97351 0.95157 0.84382 1.55323 1.78341 1.30659 1.22622 1.00090 0.72949 0.72438 0.71668 1.93515 1.79268 1.63780 1.60947 1.93527 1.77345 1.41547 1.86040 1.31728 1.24687 1.18446 1.12294 1.22530 0.81053 0.92191 0.94876 1.41854 1.11074 1.37435 1.25677 0.71541 1.18669 0.90933 0.95919 0.91953 1.66591 1.29207 1.09817 1.16354 1.23157 0.98941 0.92708 0.88447 1.22316 0.92682 1.02102 1.02850 1.21516 1.00646 0.93370 0.93609 1.19231 0.93657 1.00258 0.97948 0.94970 0.92226 0.96190 0.95783 0.92303 0.94670 0.93362 0.92465 0.92322 0.74261 0.74250 0.78248 0.81419 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.08 71.98 0.58 -5.21 16 2 C 0.05 2.44 0.51 -52.93 -0.03 2.41 16 3 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 4 C -0.52 -26.24 8.01 25.60 0.21 -26.04 16 5 H 0.06 2.78 7.74 -2.91 -0.02 2.75 16 6 C 0.02 1.25 5.15 84.65 0.44 1.68 16 7 N -0.90 -48.23 9.35 21.45 0.20 -48.03 16 8 Si 0.94 41.46 29.54 68.60 2.03 43.48 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 12 C 0.14 5.46 3.87 86.38 0.33 5.80 16 13 N -1.11 -36.59 5.33 -187.48 -1.00 -37.59 16 14 S 2.74 85.42 5.91 -56.49 -0.33 85.09 16 15 O -0.98 -31.12 17.76 -128.00 -2.27 -33.39 16 16 O -0.99 -37.91 17.50 -128.00 -2.24 -40.15 16 17 C -0.77 -20.95 6.35 23.48 0.15 -20.80 16 18 C 0.23 4.29 11.47 82.98 0.95 5.25 16 19 N -0.55 -10.09 6.05 -192.34 -1.16 -11.26 16 20 H 0.44 4.60 8.96 -92.70 -0.83 3.77 16 21 C 0.26 6.74 8.43 133.93 1.13 7.87 16 22 N -0.51 -12.84 10.39 -192.73 -2.00 -14.84 16 23 C 0.13 2.82 11.14 84.83 0.95 3.77 16 24 C -0.18 -4.19 10.10 22.36 0.23 -3.97 16 25 C -0.06 -1.92 8.73 22.61 0.20 -1.72 16 26 C -0.10 -3.08 6.28 -20.18 -0.13 -3.21 16 27 H 0.03 1.29 7.20 -2.38 -0.02 1.27 16 28 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 2.91 6.07 -2.39 -0.01 2.90 16 32 H 0.03 1.31 6.60 -2.39 -0.02 1.29 16 33 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 34 H 0.06 2.13 6.72 -2.38 -0.02 2.11 16 35 H 0.06 2.32 6.88 -2.39 -0.02 2.30 16 36 H 0.42 13.00 6.47 -96.74 -0.63 12.38 16 37 H 0.24 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.20 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.14 4.22 6.07 -2.91 -0.02 4.20 16 Total: -1.00 -70.38 336.90 -1.55 -71.93 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.35 Total: 23.76 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 5.58 Total: -39.00 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -3.96 Total: -111.71 kcal Atomic # 8 Polarization: -69.03 SS G_CDS: -4.51 Total: -73.54 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 85.42 SS G_CDS: -0.33 Total: 85.09 kcal Total: -70.38 -1.55 -71.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416534332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.049 kcal (2) G-P(sol) polarization free energy of solvation -70.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds