Wall clock time and date at job start Tue Mar 31 2020 14:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99790 * 2 1 4 4 N 1.46898 * 109.47017 * 124.15656 * 3 2 1 5 5 C 1.46897 * 111.00275 * 301.32600 * 4 3 2 6 6 C 1.50701 * 109.47099 * 289.01193 * 5 4 3 7 7 H 1.07990 * 120.00031 * 356.33774 * 6 5 4 8 8 C 1.37888 * 119.99537 * 176.33833 * 6 5 4 9 9 N 1.31512 * 120.00049 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99417 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47025 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.46683 * 119.99870 * 10 8 6 13 13 H 1.48500 * 109.46494 * 239.99608 * 10 8 6 14 14 C 1.46898 * 110.99769 * 65.28625 * 4 3 2 15 15 C 1.50696 * 109.47453 * 66.04324 * 14 4 3 16 16 C 1.38258 * 119.93984 * 89.99874 * 15 14 4 17 17 C 1.38287 * 120.09588 * 180.02562 * 16 15 14 18 18 Cl 1.73600 * 119.97429 * 180.02562 * 17 16 15 19 19 C 1.38799 * 120.05084 * 0.02562 * 17 16 15 20 20 C 1.38928 * 119.81167 * 359.86786 * 19 17 16 21 21 C 1.38184 * 119.93912 * 269.72419 * 15 14 4 22 22 O 1.36114 * 120.78477 * 180.24351 * 20 19 17 23 23 C 1.43175 * 116.69513 * 342.58666 * 22 20 19 24 24 C 1.53477 * 108.23381 * 46.29710 * 23 22 20 25 25 O 1.36132 * 119.40552 * 179.62010 * 19 17 16 26 26 H 1.07996 * 119.99359 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.00058 * 0.02562 * 1 2 3 28 28 H 1.07991 * 120.00433 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.46962 * 4.15665 * 3 2 1 30 30 H 1.09002 * 109.47181 * 244.16225 * 3 2 1 31 31 H 1.08998 * 109.46792 * 49.01373 * 5 4 3 32 32 H 1.09000 * 109.47024 * 169.01050 * 5 4 3 33 33 H 0.96998 * 119.99465 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.46826 * 306.03961 * 14 4 3 35 35 H 1.09005 * 109.46977 * 186.04537 * 14 4 3 36 36 H 1.07993 * 119.95025 * 0.02562 * 16 15 14 37 37 H 1.07999 * 119.95203 * 0.02562 * 21 15 14 38 38 H 1.09000 * 109.71158 * 165.98454 * 23 22 20 39 39 H 1.09004 * 109.71264 * 286.61099 * 23 22 20 40 40 H 1.09001 * 109.70264 * 59.97654 * 24 23 22 41 41 H 1.08999 * 109.70965 * 180.59692 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9818 1.3404 1.1461 5 6 2.2508 1.1889 2.4112 6 6 1.4569 2.4401 2.6857 7 1 1.5377 3.2875 2.0212 8 6 0.6274 2.5028 3.7854 9 7 0.5286 1.4706 4.5943 10 14 -0.3572 4.0535 4.1252 11 1 -0.0711 5.0619 3.0734 12 1 -1.8066 3.7304 4.1207 13 1 0.0238 4.6008 5.4520 14 6 4.0263 0.3158 1.0154 15 6 4.9085 0.6449 -0.1611 16 6 6.0292 1.4349 0.0164 17 6 6.8407 1.7394 -1.0611 18 17 8.2474 2.7311 -0.8346 19 6 6.5314 1.2527 -2.3237 20 6 5.4063 0.4571 -2.5006 21 6 4.5991 0.1519 -1.4144 22 8 5.0871 -0.0348 -3.7290 23 6 5.7065 0.5959 -4.8552 24 6 7.2020 0.7598 -4.5515 25 8 7.3351 1.5670 -3.3765 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3575 2.1323 0.0745 30 1 2.6331 1.3959 -0.9249 31 1 1.5740 0.3374 2.3400 32 1 2.9594 1.0228 3.2226 33 1 -0.0546 1.5149 5.3680 34 1 3.5623 -0.6582 0.8605 35 1 4.6271 0.2915 1.9246 36 1 6.2711 1.8148 0.9979 37 1 3.7252 -0.4683 -1.5492 38 1 5.5773 -0.0253 -5.7415 39 1 5.2560 1.5743 -5.0226 40 1 7.6512 -0.2181 -4.3783 41 1 7.6962 1.2485 -5.3911 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428853914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:06 Heat of formation + Delta-G solvation = -22.852807 kcal Electronic energy + Delta-G solvation = -25064.424261 eV Core-core repulsion = 21357.789015 eV Total energy + Delta-G solvation = -3706.635247 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38755 -38.68499 -37.49115 -36.91769 -36.10211 -32.80381 -32.54082 -31.24403 -30.54314 -29.04263 -27.11342 -26.17827 -24.90073 -23.43633 -22.58501 -21.03910 -20.59026 -19.02348 -18.53352 -17.54124 -17.27667 -16.20343 -15.68025 -15.35589 -15.19692 -14.93419 -14.70370 -14.55586 -14.37769 -14.26137 -14.03182 -13.65878 -13.38674 -12.87947 -12.28401 -12.15121 -12.01465 -11.81134 -11.36669 -11.31125 -11.13444 -10.95673 -10.89195 -10.82758 -10.70358 -10.68010 -10.48539 -10.41117 -9.91215 -9.22947 -8.74022 -8.43367 -8.39579 -8.09868 -7.25551 -5.99897 -4.00250 1.09965 1.23097 2.12920 2.83702 2.90243 3.00629 3.32305 3.40135 3.44928 3.56098 4.00020 4.45486 4.54333 4.56477 4.62673 4.90678 4.93628 5.15202 5.18288 5.26459 5.33159 5.36259 5.45749 5.54002 5.73466 5.86056 5.92823 6.01316 6.06499 6.20409 6.42794 6.52677 6.58496 6.69022 6.72035 7.16279 7.21149 7.24843 7.34119 7.44247 7.82969 8.07918 8.18575 8.54404 9.07651 9.63532 11.10738 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016140 B = 0.003463 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.445821 B = 8082.796577 C = 9125.818332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.182 4.182 3 C 0.086 3.914 4 N -0.522 5.522 5 C 0.190 3.810 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.088 3.912 15 C -0.042 4.042 16 C -0.086 4.086 17 C -0.030 4.030 18 Cl -0.058 7.058 19 C 0.047 3.953 20 C 0.059 3.941 21 C -0.103 4.103 22 O -0.303 6.303 23 C 0.020 3.980 24 C 0.021 3.979 25 O -0.298 6.298 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.006 0.994 32 H 0.025 0.975 33 H 0.259 0.741 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.255 -4.071 -17.912 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.202 4.202 3 C -0.042 4.042 4 N -0.245 5.245 5 C 0.066 3.934 6 C -0.539 4.539 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.040 4.040 15 C -0.043 4.043 16 C -0.105 4.105 17 C -0.057 4.057 18 Cl -0.029 7.029 19 C 0.001 3.999 20 C 0.014 3.986 21 C -0.122 4.122 22 O -0.218 6.218 23 C -0.056 4.056 24 C -0.055 4.055 25 O -0.212 6.212 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.024 0.976 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.550 -3.563 -17.758 22.035 hybrid contribution -0.872 0.004 0.090 0.876 sum 11.678 -3.559 -17.669 21.476 Atomic orbital electron populations 1.23693 0.96049 1.01125 1.00554 1.23511 0.96729 0.99678 1.00236 1.21315 0.94680 0.94426 0.93778 1.62470 1.13044 1.44664 1.04332 1.19806 0.92379 0.97174 0.84087 1.21147 1.23651 0.99771 1.09335 0.91936 1.24951 0.97015 0.96322 0.96202 1.69963 1.39053 1.29768 1.15047 0.86509 0.79688 0.83452 0.78199 1.19672 1.21203 1.21087 1.21051 0.93692 0.94555 0.94669 1.19668 0.94629 0.95589 0.94461 1.20820 0.93656 0.97995 0.98042 1.20069 0.93106 1.01074 0.91457 1.98354 1.39241 1.68243 1.97098 1.18393 0.91737 1.02062 0.87695 1.18620 0.93916 0.99810 0.86302 1.20487 0.99192 1.02484 0.90054 1.86339 1.66840 1.56670 1.11943 1.23637 0.93001 1.00257 0.88702 1.23628 0.97006 0.96985 0.87881 1.86376 1.58475 1.54805 1.21576 0.89708 0.88483 0.88673 0.89802 0.91799 0.97568 0.95693 0.93090 0.94069 0.89878 0.83698 0.84387 0.86117 0.90360 0.90529 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 14.32 29.01 0.42 -2.65 16 2 C -0.18 -3.20 7.40 -36.02 -0.27 -3.47 16 3 C 0.09 1.61 5.34 -4.97 -0.03 1.59 16 4 N -0.52 -10.66 4.65 -238.96 -1.11 -11.77 16 5 C 0.19 4.73 4.57 -4.98 -0.02 4.71 16 6 C -0.50 -13.69 8.54 -34.44 -0.29 -13.99 16 7 H 0.06 1.72 7.56 -52.49 -0.40 1.33 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.28 13.29 55.43 0.74 -25.55 16 10 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.09 1.49 4.96 -4.98 -0.02 1.46 16 15 C -0.04 -0.63 4.88 -104.64 -0.51 -1.15 16 16 C -0.09 -1.26 9.47 -39.56 -0.37 -1.63 16 17 C -0.03 -0.43 6.33 -39.36 -0.25 -0.67 16 18 Cl -0.06 -0.78 28.46 -51.86 -1.48 -2.25 16 19 C 0.05 0.65 6.49 -39.12 -0.25 0.40 16 20 C 0.06 0.80 6.49 -39.14 -0.25 0.55 16 21 C -0.10 -1.46 7.81 -39.42 -0.31 -1.77 16 22 O -0.30 -3.68 10.42 -32.91 -0.34 -4.03 16 23 C 0.02 0.16 7.26 37.40 0.27 0.43 16 24 C 0.02 0.16 7.26 37.40 0.27 0.44 16 25 O -0.30 -3.67 9.84 -32.96 -0.32 -3.99 16 26 H 0.08 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.10 1.74 7.84 -52.49 -0.41 1.32 16 28 H 0.10 1.56 6.83 -52.49 -0.36 1.20 16 29 H 0.08 1.73 6.97 -51.93 -0.36 1.37 16 30 H 0.06 1.09 5.81 -51.93 -0.30 0.79 16 31 H 0.01 0.17 6.69 -51.93 -0.35 -0.17 16 32 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.04 0.67 6.34 -51.93 -0.33 0.34 16 35 H 0.08 1.38 7.81 -51.93 -0.41 0.97 16 36 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.14 1.87 7.97 -52.49 -0.42 1.45 16 38 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -30.73 352.76 -9.36 -40.09 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.41 Total: -0.03 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.72 Total: -14.29 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.38 Total: -37.32 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.67 Total: -8.02 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.48 Total: -2.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.73 -9.36 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.237 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds