Wall clock time and date at job start Tue Mar 31 2020 14:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99790 * 2 1 4 4 N 1.46898 * 109.47017 * 124.15656 * 3 2 1 5 5 C 1.46897 * 111.00275 * 301.32600 * 4 3 2 6 6 C 1.50701 * 109.47099 * 289.01193 * 5 4 3 7 7 H 1.07990 * 120.00031 * 356.33774 * 6 5 4 8 8 C 1.37888 * 119.99537 * 176.33833 * 6 5 4 9 9 N 1.31512 * 120.00049 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99417 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47025 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.46683 * 119.99870 * 10 8 6 13 13 H 1.48500 * 109.46494 * 239.99608 * 10 8 6 14 14 C 1.46898 * 110.99769 * 65.28625 * 4 3 2 15 15 C 1.50696 * 109.47453 * 66.04324 * 14 4 3 16 16 C 1.38258 * 119.93984 * 89.99874 * 15 14 4 17 17 C 1.38287 * 120.09588 * 180.02562 * 16 15 14 18 18 Cl 1.73600 * 119.97429 * 180.02562 * 17 16 15 19 19 C 1.38799 * 120.05084 * 0.02562 * 17 16 15 20 20 C 1.38928 * 119.81167 * 359.86786 * 19 17 16 21 21 C 1.38184 * 119.93912 * 269.72419 * 15 14 4 22 22 O 1.36114 * 120.78477 * 180.24351 * 20 19 17 23 23 C 1.43175 * 116.69513 * 342.58666 * 22 20 19 24 24 C 1.53477 * 108.23381 * 46.29710 * 23 22 20 25 25 O 1.36132 * 119.40552 * 179.62010 * 19 17 16 26 26 H 1.07996 * 119.99359 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.00058 * 0.02562 * 1 2 3 28 28 H 1.07991 * 120.00433 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.46962 * 4.15665 * 3 2 1 30 30 H 1.09002 * 109.47181 * 244.16225 * 3 2 1 31 31 H 1.08998 * 109.46792 * 49.01373 * 5 4 3 32 32 H 1.09000 * 109.47024 * 169.01050 * 5 4 3 33 33 H 0.96998 * 119.99465 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.46826 * 306.03961 * 14 4 3 35 35 H 1.09005 * 109.46977 * 186.04537 * 14 4 3 36 36 H 1.07993 * 119.95025 * 0.02562 * 16 15 14 37 37 H 1.07999 * 119.95203 * 0.02562 * 21 15 14 38 38 H 1.09000 * 109.71158 * 165.98454 * 23 22 20 39 39 H 1.09004 * 109.71264 * 286.61099 * 23 22 20 40 40 H 1.09001 * 109.70264 * 59.97654 * 24 23 22 41 41 H 1.08999 * 109.70965 * 180.59692 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9818 1.3404 1.1461 5 6 2.2508 1.1889 2.4112 6 6 1.4569 2.4401 2.6857 7 1 1.5377 3.2875 2.0212 8 6 0.6274 2.5028 3.7854 9 7 0.5286 1.4706 4.5943 10 14 -0.3572 4.0535 4.1252 11 1 -0.0711 5.0619 3.0734 12 1 -1.8066 3.7304 4.1207 13 1 0.0238 4.6008 5.4520 14 6 4.0263 0.3158 1.0154 15 6 4.9085 0.6449 -0.1611 16 6 6.0292 1.4349 0.0164 17 6 6.8407 1.7394 -1.0611 18 17 8.2474 2.7311 -0.8346 19 6 6.5314 1.2527 -2.3237 20 6 5.4063 0.4571 -2.5006 21 6 4.5991 0.1519 -1.4144 22 8 5.0871 -0.0348 -3.7290 23 6 5.7065 0.5959 -4.8552 24 6 7.2020 0.7598 -4.5515 25 8 7.3351 1.5670 -3.3765 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3575 2.1323 0.0745 30 1 2.6331 1.3959 -0.9249 31 1 1.5740 0.3374 2.3400 32 1 2.9594 1.0228 3.2226 33 1 -0.0546 1.5149 5.3680 34 1 3.5623 -0.6582 0.8605 35 1 4.6271 0.2915 1.9246 36 1 6.2711 1.8148 0.9979 37 1 3.7252 -0.4683 -1.5492 38 1 5.5773 -0.0253 -5.7415 39 1 5.2560 1.5743 -5.0226 40 1 7.6512 -0.2181 -4.3783 41 1 7.6962 1.2485 -5.3911 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428853914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:05 Heat of formation + Delta-G solvation = -41.046069 kcal Electronic energy + Delta-G solvation = -25065.213180 eV Core-core repulsion = 21357.789015 eV Total energy + Delta-G solvation = -3707.424166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.31633 -39.91847 -38.47256 -38.15390 -37.22191 -34.79808 -33.91857 -32.35125 -31.68829 -30.08270 -28.88119 -27.50549 -26.11204 -24.88052 -23.69421 -22.66109 -21.63375 -20.35984 -19.56216 -18.47506 -18.39527 -18.12332 -16.90346 -16.63805 -16.43157 -16.13970 -16.02192 -15.81838 -15.55947 -15.30379 -15.13372 -15.08570 -14.59322 -14.16035 -14.00170 -13.38117 -13.24517 -13.03640 -12.96745 -12.72868 -12.63544 -12.42252 -12.21693 -12.17464 -12.00469 -11.97777 -11.88614 -11.71913 -11.52298 -11.20362 -10.55524 -10.15792 -9.51728 -9.16558 -8.89442 -8.13386 -6.21155 0.00380 0.15031 1.06050 1.41455 1.43373 1.48894 1.55660 1.97684 2.18041 2.41712 2.48661 3.19656 3.27846 3.53301 3.66551 3.76243 3.94671 4.06631 4.10688 4.13783 4.20428 4.25979 4.37595 4.55381 4.58037 4.61064 4.69261 4.78021 4.87014 4.92270 5.00882 5.12555 5.28454 5.39988 5.43258 5.47635 5.71291 5.76250 5.80673 5.94642 6.14919 6.28239 6.41183 6.66715 6.94759 7.47366 8.96753 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016140 B = 0.003463 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.445821 B = 8082.796577 C = 9125.818332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.187 4.187 3 C 0.091 3.909 4 N -0.531 5.531 5 C 0.207 3.793 6 C -0.511 4.511 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.957 3.043 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.093 3.907 15 C -0.051 4.051 16 C -0.092 4.092 17 C -0.041 4.041 18 Cl -0.053 7.053 19 C 0.050 3.950 20 C 0.059 3.941 21 C -0.104 4.104 22 O -0.314 6.314 23 C 0.013 3.987 24 C 0.014 3.986 25 O -0.311 6.311 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.082 0.918 31 H -0.014 1.014 32 H 0.001 0.999 33 H 0.262 0.738 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.671 -4.008 -20.061 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.207 4.207 3 C -0.036 4.036 4 N -0.253 5.253 5 C 0.082 3.918 6 C -0.550 4.550 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.573 5.573 10 Si 0.783 3.217 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.207 1.207 14 C -0.035 4.035 15 C -0.052 4.052 16 C -0.111 4.111 17 C -0.068 4.068 18 Cl -0.024 7.024 19 C 0.003 3.997 20 C 0.013 3.987 21 C -0.123 4.123 22 O -0.229 6.229 23 C -0.062 4.062 24 C -0.061 4.061 25 O -0.226 6.226 26 H 0.123 0.877 27 H 0.105 0.895 28 H 0.129 0.871 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.004 0.996 32 H 0.019 0.981 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.176 0.824 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 12.981 -3.499 -19.944 24.052 hybrid contribution -0.904 -0.040 0.590 1.080 sum 12.078 -3.539 -19.354 23.086 Atomic orbital electron populations 1.23846 0.96171 1.01696 1.00057 1.23534 0.96900 0.99627 1.00623 1.21226 0.94331 0.94342 0.93742 1.62315 1.13397 1.46559 1.03065 1.19412 0.91396 0.95430 0.85609 1.21419 1.23954 1.00388 1.09232 0.92588 1.25739 0.98071 0.99272 0.96024 1.70072 1.39923 1.31681 1.15585 0.85508 0.78270 0.79841 0.78070 1.19088 1.20587 1.20660 1.20999 0.92861 0.93916 0.95676 1.19394 0.94776 0.96884 0.94138 1.20829 0.93839 0.98143 0.98333 1.20136 0.93384 1.01505 0.91780 1.98348 1.38881 1.68093 1.97111 1.18471 0.91827 1.01304 0.88074 1.18616 0.93609 0.99384 0.87045 1.20515 0.99504 1.02403 0.89907 1.86326 1.67436 1.57067 1.12088 1.24021 0.92700 1.01093 0.88348 1.24028 0.97406 0.97433 0.87191 1.86360 1.58146 1.55790 1.22301 0.87668 0.89469 0.87116 0.92190 0.89957 0.99609 0.98105 0.92933 0.93302 0.90220 0.83818 0.83818 0.82435 0.90251 0.89820 0.82616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.17 14.32 67.78 0.97 -5.20 16 2 C -0.19 -6.51 7.40 25.64 0.19 -6.32 16 3 C 0.09 3.43 5.34 85.56 0.46 3.89 16 4 N -0.53 -22.00 4.65 -909.95 -4.24 -26.24 16 5 C 0.21 10.61 4.57 85.56 0.39 11.00 16 6 C -0.51 -28.51 8.54 25.60 0.22 -28.29 16 7 H 0.06 3.13 7.56 -2.92 -0.02 3.11 16 8 C 0.01 0.38 5.46 84.66 0.46 0.85 16 9 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 10 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 14 C 0.09 3.16 4.96 85.56 0.42 3.58 16 15 C -0.05 -1.51 4.88 -19.87 -0.10 -1.61 16 16 C -0.09 -2.69 9.47 22.29 0.21 -2.48 16 17 C -0.04 -1.14 6.33 22.42 0.14 -0.99 16 18 Cl -0.05 -1.38 28.46 -2.72 -0.08 -1.46 16 19 C 0.05 1.31 6.49 22.57 0.15 1.46 16 20 C 0.06 1.53 6.49 22.55 0.15 1.68 16 21 C -0.10 -2.84 7.81 22.38 0.17 -2.67 16 22 O -0.31 -6.90 10.42 -82.61 -0.86 -7.76 16 23 C 0.01 0.17 7.26 72.14 0.52 0.69 16 24 C 0.01 0.18 7.26 72.14 0.52 0.70 16 25 O -0.31 -7.01 9.84 -82.81 -0.81 -7.82 16 26 H 0.11 3.14 8.06 -2.91 -0.02 3.12 16 27 H 0.09 3.14 7.84 -2.91 -0.02 3.11 16 28 H 0.11 3.49 6.83 -2.92 -0.02 3.47 16 29 H 0.06 2.52 6.97 -2.38 -0.02 2.51 16 30 H 0.08 2.77 5.81 -2.39 -0.01 2.76 16 31 H -0.01 -0.76 6.69 -2.39 -0.02 -0.77 16 32 H 0.00 0.05 7.83 -2.39 -0.02 0.03 16 33 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 34 H 0.05 1.58 6.34 -2.39 -0.02 1.56 16 35 H 0.08 2.72 7.81 -2.38 -0.02 2.70 16 36 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.14 3.69 7.97 -2.91 -0.02 3.67 16 38 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -66.23 352.76 2.25 -63.99 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.04 Total: 11.59 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 4.88 Total: -23.72 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -3.95 Total: -81.23 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.68 Total: -15.58 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -66.23 2.25 -63.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.941 kcal (2) G-P(sol) polarization free energy of solvation -66.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds