Wall clock time and date at job start Tue Mar 31 2020 13:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.46771 * 2 1 4 4 N 1.31788 * 122.85870 * 269.97906 * 3 2 1 5 5 C 1.28964 * 117.21192 * 180.02562 * 4 3 2 6 6 S 1.70959 * 110.32775 * 359.72096 * 5 4 3 7 7 C 1.34518 * 122.86157 * 90.00049 * 3 2 1 8 8 N 1.39429 * 126.07079 * 359.97438 * 7 3 2 9 9 C 1.34772 * 119.99694 * 180.02562 * 8 7 3 10 10 O 1.21419 * 120.00057 * 359.97438 * 9 8 7 11 11 C 1.49261 * 119.99757 * 179.97438 * 9 8 7 12 12 O 1.21367 * 120.00391 * 5.08938 * 11 9 8 13 13 N 1.34778 * 119.99779 * 185.09037 * 11 9 8 14 14 C 1.46502 * 120.00007 * 185.03564 * 13 11 9 15 15 C 1.52997 * 109.46961 * 184.77533 * 14 13 11 16 16 C 1.50698 * 115.55391 * 294.81631 * 15 14 13 17 17 H 1.07998 * 120.00066 * 95.20248 * 16 15 14 18 18 C 1.37878 * 120.00473 * 274.92810 * 16 15 14 19 19 N 1.31517 * 119.99754 * 355.41814 * 18 16 15 20 20 Si 1.86794 * 120.00501 * 175.41554 * 18 16 15 21 21 H 1.48506 * 109.47138 * 59.99993 * 20 18 16 22 22 H 1.48497 * 109.47408 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47174 * 300.00591 * 20 18 16 24 24 C 1.53002 * 117.49829 * 80.49047 * 15 14 13 25 25 C 1.53005 * 117.49838 * 149.15045 * 15 14 13 26 26 H 1.09003 * 109.47140 * 299.99672 * 1 2 3 27 27 H 1.09001 * 109.47329 * 60.00387 * 1 2 3 28 28 H 1.09007 * 109.46778 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46975 * 239.99853 * 2 1 3 30 30 H 1.08995 * 109.47123 * 120.00010 * 2 1 3 31 31 H 1.08001 * 124.83502 * 179.97438 * 5 4 3 32 32 H 0.96996 * 119.99625 * 359.97438 * 8 7 3 33 33 H 0.97000 * 120.00378 * 5.03137 * 13 11 9 34 34 H 1.09003 * 109.46657 * 64.78033 * 14 13 11 35 35 H 1.08999 * 109.47030 * 304.77858 * 14 13 11 36 36 H 0.96996 * 120.00174 * 184.99818 * 19 18 16 37 37 H 1.08995 * 117.49715 * 214.99918 * 24 15 14 38 38 H 1.08996 * 117.50063 * 0.02562 * 24 15 14 39 39 H 1.09005 * 117.49511 * 359.97438 * 25 15 14 40 40 H 1.09001 * 117.50455 * 144.97190 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2710 2.0948 -1.1070 5 6 2.6991 3.3047 -0.9801 6 16 2.8361 3.7158 0.6736 7 6 2.2756 2.1090 1.1299 8 7 2.1081 1.6366 2.4310 9 6 2.3899 2.4353 3.4794 10 8 2.7901 3.5660 3.2908 11 6 2.2101 1.9298 4.8722 12 8 1.8992 0.7721 5.0623 13 7 2.3928 2.7590 5.9188 14 6 2.3250 2.2383 7.2865 15 6 2.4471 3.3958 8.2795 16 6 3.7694 4.1186 8.2761 17 1 3.8920 5.0174 7.6901 18 6 4.8211 3.6356 9.0255 19 7 4.6450 2.5971 9.8130 20 14 6.4960 4.4561 8.9224 21 1 6.3785 5.8757 9.3423 22 1 7.4483 3.7517 9.8180 23 1 6.9929 4.3931 7.5244 24 6 1.1905 4.2231 8.5580 25 6 1.7217 3.2565 9.6195 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.9335 3.9655 -1.8016 32 1 1.7880 0.7334 2.5816 33 1 2.5694 3.7006 5.7666 34 1 3.1409 1.5337 7.4478 35 1 1.3719 1.7308 7.4352 36 1 5.3633 2.3018 10.3942 37 1 1.3203 5.2901 8.7387 38 1 0.2768 3.9425 8.0341 39 1 1.1572 2.3403 9.7933 40 1 2.2011 3.6872 10.4986 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430327439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:35 Heat of formation + Delta-G solvation = -4.161993 kcal Electronic energy + Delta-G solvation = -24421.910829 eV Core-core repulsion = 20750.422535 eV Total energy + Delta-G solvation = -3671.488295 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98063 -39.91562 -38.53046 -36.86262 -35.56769 -33.68035 -33.30206 -32.04337 -29.13109 -27.26697 -25.85533 -25.34373 -23.54953 -23.47515 -21.28536 -20.73233 -19.97512 -19.57617 -18.43465 -17.85227 -16.87961 -16.45706 -16.23342 -16.00793 -15.10757 -15.01581 -14.73015 -14.35113 -14.25425 -14.11485 -13.95768 -13.81907 -13.37175 -12.82101 -12.60563 -12.17423 -12.04137 -11.77580 -11.68078 -11.57068 -11.39011 -11.09637 -11.06115 -11.00173 -10.60303 -10.32924 -9.89660 -9.65490 -9.47579 -9.18593 -9.16320 -8.65890 -8.52196 -8.32550 -8.28118 -6.15544 -4.26010 0.44250 0.95941 1.48707 1.64338 2.30254 2.62917 3.23905 3.27706 3.29590 3.32311 3.70825 4.09119 4.29894 4.61727 4.69691 4.84482 5.05988 5.11264 5.11695 5.24471 5.32243 5.58925 5.66573 5.81212 5.85063 5.94668 6.07856 6.18621 6.29437 6.36184 6.53612 6.58929 6.64836 6.86955 7.00943 7.21923 7.34652 7.44661 7.59829 7.73964 7.83435 8.22071 8.26425 8.76204 9.42334 10.91333 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.003104 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.852600 B = 9017.010849 C = 9808.624956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.016 3.984 4 N -0.446 5.446 5 C -0.045 4.045 6 S 0.240 5.760 7 C -0.002 4.002 8 N -0.603 5.603 9 C 0.499 3.501 10 O -0.484 6.484 11 C 0.504 3.496 12 O -0.533 6.533 13 N -0.659 5.659 14 C 0.158 3.842 15 C 0.020 3.980 16 C -0.504 4.504 17 H 0.062 0.938 18 C 0.075 3.925 19 N -0.875 5.875 20 Si 0.891 3.109 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.210 4.210 25 C -0.138 4.138 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.197 0.803 32 H 0.430 0.570 33 H 0.415 0.585 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.263 0.737 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 -1.565 -17.090 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.121 4.121 4 N -0.160 5.160 5 C -0.343 4.343 6 S 0.491 5.509 7 C -0.220 4.220 8 N -0.251 5.251 9 C 0.281 3.719 10 O -0.358 6.358 11 C 0.282 3.718 12 O -0.411 6.411 13 N -0.308 5.308 14 C 0.036 3.964 15 C 0.020 3.980 16 C -0.541 4.541 17 H 0.080 0.920 18 C -0.130 4.130 19 N -0.511 5.511 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.247 4.247 25 C -0.176 4.176 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.214 0.786 32 H 0.271 0.729 33 H 0.252 0.748 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.702 -1.023 -16.889 17.855 hybrid contribution 0.686 -0.423 -0.003 0.806 sum -5.017 -1.446 -16.892 17.680 Atomic orbital electron populations 1.21753 0.94295 1.02078 1.02346 1.20038 0.96209 0.89045 1.03346 1.20105 1.07546 0.99268 0.85163 1.66149 1.13160 1.06362 1.30289 1.28485 1.06205 0.96871 1.02689 1.84993 1.59740 1.07386 0.98822 1.23537 1.10037 0.99925 0.88537 1.42521 1.63079 1.18317 1.01146 1.21006 0.78220 0.85468 0.87207 1.90736 1.42178 1.18096 1.84751 1.19327 0.80909 0.86669 0.84858 1.90759 1.47689 1.17244 1.85438 1.45911 1.65893 1.12972 1.06059 1.21304 1.00239 0.97241 0.77602 1.19016 0.91357 0.94092 0.93583 1.20340 0.93622 1.10291 1.29886 0.92015 1.24986 0.98679 0.94443 0.94885 1.69969 1.33233 1.24448 1.23417 0.86672 0.83724 0.79516 0.78231 1.20153 1.21226 1.20028 1.23044 0.97918 0.97448 1.06290 1.22482 1.02368 0.98370 0.94388 0.92736 0.92196 0.91821 0.89708 0.90793 0.78586 0.72938 0.74798 0.90500 0.93095 0.92708 0.90148 0.91628 0.91684 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.05 -0.43 6.12 -27.88 -0.17 -0.60 16 3 C 0.02 0.19 6.03 -83.93 -0.51 -0.32 16 4 N -0.45 -5.40 10.52 -11.72 -0.12 -5.52 16 5 C -0.05 -0.46 12.21 51.56 0.63 0.17 16 6 S 0.24 2.79 20.45 -107.50 -2.20 0.60 16 7 C 0.00 -0.02 7.17 -15.41 -0.11 -0.13 16 8 N -0.60 -7.69 5.38 -11.10 -0.06 -7.75 16 9 C 0.50 7.58 7.84 -11.68 -0.09 7.49 16 10 O -0.48 -7.93 14.12 5.44 0.08 -7.85 16 11 C 0.50 8.68 7.87 -11.67 -0.09 8.59 16 12 O -0.53 -9.93 16.47 5.48 0.09 -9.84 16 13 N -0.66 -12.20 5.46 -60.79 -0.33 -12.53 16 14 C 0.16 3.31 5.53 -4.04 -0.02 3.29 16 15 C 0.02 0.45 1.47 -155.66 -0.23 0.22 16 16 C -0.50 -12.58 8.59 -34.44 -0.30 -12.88 16 17 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 18 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 19 N -0.87 -23.38 12.65 55.43 0.70 -22.68 16 20 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.21 -4.17 9.96 -26.69 -0.27 -4.44 16 25 C -0.14 -3.00 9.14 -26.69 -0.24 -3.24 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.61 7.22 -51.93 -0.37 0.23 16 31 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.43 4.79 7.10 -40.82 -0.29 4.50 16 33 H 0.42 7.55 7.83 -40.82 -0.32 7.23 16 34 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 35 H 0.05 1.02 8.05 -51.93 -0.42 0.60 16 36 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -28.47 360.85 -7.73 -36.20 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.18 Total: 9.63 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.13 Total: -0.90 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.19 Total: -48.48 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.17 Total: -17.69 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.20 Total: 0.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.47 -7.73 -36.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430327439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.037 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds