Wall clock time and date at job start Tue Mar 31 2020 13:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.46771 * 2 1 4 4 N 1.31788 * 122.85870 * 269.97906 * 3 2 1 5 5 C 1.28964 * 117.21192 * 180.02562 * 4 3 2 6 6 S 1.70959 * 110.32775 * 359.72096 * 5 4 3 7 7 C 1.34518 * 122.86157 * 90.00049 * 3 2 1 8 8 N 1.39429 * 126.07079 * 359.97438 * 7 3 2 9 9 C 1.34772 * 119.99694 * 180.02562 * 8 7 3 10 10 O 1.21419 * 120.00057 * 359.97438 * 9 8 7 11 11 C 1.49261 * 119.99757 * 179.97438 * 9 8 7 12 12 O 1.21367 * 120.00391 * 5.08938 * 11 9 8 13 13 N 1.34778 * 119.99779 * 185.09037 * 11 9 8 14 14 C 1.46502 * 120.00007 * 185.03564 * 13 11 9 15 15 C 1.52997 * 109.46961 * 184.77533 * 14 13 11 16 16 C 1.50698 * 115.55391 * 294.81631 * 15 14 13 17 17 H 1.07998 * 120.00066 * 95.20248 * 16 15 14 18 18 C 1.37878 * 120.00473 * 274.92810 * 16 15 14 19 19 N 1.31517 * 119.99754 * 355.41814 * 18 16 15 20 20 Si 1.86794 * 120.00501 * 175.41554 * 18 16 15 21 21 H 1.48506 * 109.47138 * 59.99993 * 20 18 16 22 22 H 1.48497 * 109.47408 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47174 * 300.00591 * 20 18 16 24 24 C 1.53002 * 117.49829 * 80.49047 * 15 14 13 25 25 C 1.53005 * 117.49838 * 149.15045 * 15 14 13 26 26 H 1.09003 * 109.47140 * 299.99672 * 1 2 3 27 27 H 1.09001 * 109.47329 * 60.00387 * 1 2 3 28 28 H 1.09007 * 109.46778 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46975 * 239.99853 * 2 1 3 30 30 H 1.08995 * 109.47123 * 120.00010 * 2 1 3 31 31 H 1.08001 * 124.83502 * 179.97438 * 5 4 3 32 32 H 0.96996 * 119.99625 * 359.97438 * 8 7 3 33 33 H 0.97000 * 120.00378 * 5.03137 * 13 11 9 34 34 H 1.09003 * 109.46657 * 64.78033 * 14 13 11 35 35 H 1.08999 * 109.47030 * 304.77858 * 14 13 11 36 36 H 0.96996 * 120.00174 * 184.99818 * 19 18 16 37 37 H 1.08995 * 117.49715 * 214.99918 * 24 15 14 38 38 H 1.08996 * 117.50063 * 0.02562 * 24 15 14 39 39 H 1.09005 * 117.49511 * 359.97438 * 25 15 14 40 40 H 1.09001 * 117.50455 * 144.97190 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2710 2.0948 -1.1070 5 6 2.6991 3.3047 -0.9801 6 16 2.8361 3.7158 0.6736 7 6 2.2756 2.1090 1.1299 8 7 2.1081 1.6366 2.4310 9 6 2.3899 2.4353 3.4794 10 8 2.7901 3.5660 3.2908 11 6 2.2101 1.9298 4.8722 12 8 1.8992 0.7721 5.0623 13 7 2.3928 2.7590 5.9188 14 6 2.3250 2.2383 7.2865 15 6 2.4471 3.3958 8.2795 16 6 3.7694 4.1186 8.2761 17 1 3.8920 5.0174 7.6901 18 6 4.8211 3.6356 9.0255 19 7 4.6450 2.5971 9.8130 20 14 6.4960 4.4561 8.9224 21 1 6.3785 5.8757 9.3423 22 1 7.4483 3.7517 9.8180 23 1 6.9929 4.3931 7.5244 24 6 1.1905 4.2231 8.5580 25 6 1.7217 3.2565 9.6195 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.9335 3.9655 -1.8016 32 1 1.7880 0.7334 2.5816 33 1 2.5694 3.7006 5.7666 34 1 3.1409 1.5337 7.4478 35 1 1.3719 1.7308 7.4352 36 1 5.3633 2.3018 10.3942 37 1 1.3203 5.2901 8.7387 38 1 0.2768 3.9425 8.0341 39 1 1.1572 2.3403 9.7933 40 1 2.2011 3.6872 10.4986 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430327439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:34 Heat of formation + Delta-G solvation = -22.866897 kcal Electronic energy + Delta-G solvation = -24422.721935 eV Core-core repulsion = 20750.422535 eV Total energy + Delta-G solvation = -3672.299400 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.15905 -40.92848 -39.87031 -38.51898 -36.66703 -35.07829 -34.18382 -33.96476 -30.11364 -28.73073 -27.47536 -26.59278 -24.80092 -24.23469 -22.93639 -21.91072 -21.43901 -20.91258 -19.72020 -18.85913 -18.17955 -17.78668 -17.51339 -17.34277 -16.65627 -16.48145 -16.09331 -15.69631 -15.37862 -15.09718 -15.00422 -14.86970 -14.67854 -14.47453 -13.73572 -13.51120 -13.37210 -13.07182 -12.95890 -12.85337 -12.82020 -12.59342 -12.40153 -12.15292 -12.01542 -11.86907 -11.45597 -11.06214 -10.97964 -10.52721 -10.46364 -10.20256 -10.07324 -9.99545 -9.26108 -8.11053 -6.24836 -0.53797 0.07232 0.30570 0.69934 1.16421 1.42502 1.45284 1.50534 1.68985 2.01652 2.40728 2.47383 3.16242 3.24195 3.31251 3.55292 3.86491 4.09486 4.18175 4.32408 4.40782 4.50583 4.58902 4.61718 4.67137 4.67873 4.88521 5.01298 5.02565 5.10141 5.15729 5.24696 5.28938 5.35098 5.49657 5.58211 5.69557 5.76934 6.18114 6.35159 6.44824 6.71639 6.80186 6.84035 7.45259 8.95130 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.003104 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.852600 B = 9017.010849 C = 9808.624956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C 0.025 3.975 4 N -0.470 5.470 5 C -0.020 4.020 6 S 0.222 5.778 7 C -0.033 4.033 8 N -0.588 5.588 9 C 0.506 3.494 10 O -0.500 6.500 11 C 0.509 3.491 12 O -0.547 6.547 13 N -0.662 5.662 14 C 0.174 3.826 15 C -0.002 4.002 16 C -0.510 4.510 17 H 0.059 0.941 18 C 0.030 3.970 19 N -0.902 5.902 20 Si 0.944 3.056 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.181 4.181 25 C -0.146 4.146 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.233 0.767 32 H 0.436 0.564 33 H 0.417 0.583 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.260 0.740 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.711 -1.286 -19.026 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C -0.111 4.111 4 N -0.184 5.184 5 C -0.317 4.317 6 S 0.474 5.526 7 C -0.250 4.250 8 N -0.236 5.236 9 C 0.287 3.713 10 O -0.375 6.375 11 C 0.288 3.712 12 O -0.426 6.426 13 N -0.312 5.312 14 C 0.051 3.949 15 C -0.003 4.003 16 C -0.547 4.547 17 H 0.077 0.923 18 C -0.171 4.171 19 N -0.540 5.540 20 Si 0.770 3.230 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.218 4.218 25 C -0.184 4.184 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.249 0.751 32 H 0.278 0.722 33 H 0.254 0.746 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.263 -0.745 -18.856 19.883 hybrid contribution 0.825 -0.511 0.447 1.068 sum -5.438 -1.256 -18.410 19.237 Atomic orbital electron populations 1.21716 0.93494 1.03087 1.01700 1.20184 0.96835 0.87840 1.04150 1.20500 1.05788 1.00013 0.84816 1.66253 1.14608 1.07189 1.30331 1.29096 1.03399 0.96487 1.02747 1.85055 1.59916 1.07536 1.00095 1.23615 1.12445 1.00619 0.88305 1.42268 1.62249 1.18197 1.00908 1.20410 0.78755 0.85479 0.86649 1.90739 1.43302 1.18598 1.84815 1.19595 0.79843 0.86188 0.85555 1.90746 1.48060 1.17832 1.85944 1.45777 1.66634 1.13203 1.05587 1.20901 0.99318 0.96059 0.78619 1.19054 0.91528 0.95280 0.94417 1.20634 0.94895 1.10123 1.29079 0.92293 1.25605 1.01425 0.95099 0.94976 1.70069 1.33821 1.25730 1.24336 0.85841 0.80461 0.78821 0.77875 1.19630 1.21416 1.20076 1.23030 0.97515 0.97029 1.04210 1.22402 1.02881 0.99521 0.93592 0.93330 0.92834 0.90030 0.89102 0.89800 0.75112 0.72158 0.74569 0.93781 0.92196 0.93061 0.89979 0.89080 0.90571 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.89 71.98 0.71 -1.41 16 2 C -0.05 -0.84 6.12 29.85 0.18 -0.66 16 3 C 0.03 0.55 6.03 41.71 0.25 0.80 16 4 N -0.47 -10.37 10.52 -190.99 -2.01 -12.38 16 5 C -0.02 -0.36 12.21 130.66 1.60 1.24 16 6 S 0.22 4.88 20.45 -56.49 -1.16 3.72 16 7 C -0.03 -0.78 7.17 82.63 0.59 -0.18 16 8 N -0.59 -14.42 5.38 -307.36 -1.65 -16.08 16 9 C 0.51 15.02 7.84 87.21 0.68 15.70 16 10 O -0.50 -16.06 14.12 -3.46 -0.05 -16.11 16 11 C 0.51 17.28 7.87 87.21 0.69 17.96 16 12 O -0.55 -20.08 16.47 -3.30 -0.05 -20.14 16 13 N -0.66 -24.31 5.46 -464.60 -2.54 -26.85 16 14 C 0.17 7.28 5.53 86.38 0.48 7.75 16 15 C 0.00 -0.09 1.47 -52.93 -0.08 -0.17 16 16 C -0.51 -25.50 8.59 25.60 0.22 -25.28 16 17 H 0.06 2.91 7.82 -2.91 -0.02 2.89 16 18 C 0.03 1.57 5.43 84.65 0.46 2.03 16 19 N -0.90 -49.04 12.65 21.45 0.27 -48.77 16 20 Si 0.94 41.75 29.54 68.60 2.03 43.78 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.18 -6.91 9.96 30.62 0.30 -6.60 16 25 C -0.15 -6.30 9.14 30.62 0.28 -6.02 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.23 7.22 -2.39 -0.02 1.21 16 31 H 0.23 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.44 9.24 7.10 -92.71 -0.66 8.58 16 33 H 0.42 15.01 7.83 -92.71 -0.73 14.28 16 34 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 36 H 0.26 13.72 8.32 -92.71 -0.77 12.95 16 37 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 40 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -60.20 360.85 0.92 -59.29 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -0.29 Total: 28.37 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.37 Total: 5.17 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -5.93 Total: -104.08 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -0.10 Total: -36.25 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -1.16 Total: 3.72 kcal Total: -60.20 0.92 -59.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430327439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.420 kcal (2) G-P(sol) polarization free energy of solvation -60.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds