Wall clock time and date at job start Tue Mar 31 2020 13:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47144 * 2 1 4 4 C 1.33532 * 122.71814 * 124.99618 * 3 2 1 5 5 S 1.76177 * 108.05573 * 179.74316 * 4 3 2 6 6 C 1.70974 * 90.33890 * 0.30454 * 5 4 3 7 7 N 1.38749 * 124.94677 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99679 * 359.69253 * 7 6 5 9 9 O 1.21382 * 119.99988 * 0.02562 * 8 7 6 10 10 C 1.49306 * 119.99732 * 180.02562 * 8 7 6 11 11 O 1.21355 * 120.00269 * 5.08833 * 10 8 7 12 12 N 1.34778 * 119.99753 * 185.09230 * 10 8 7 13 13 C 1.46502 * 120.00007 * 185.03594 * 12 10 8 14 14 C 1.53005 * 109.47051 * 184.77327 * 13 12 10 15 15 C 1.50691 * 115.55309 * 294.81962 * 14 13 12 16 16 H 1.07998 * 120.00212 * 95.20123 * 15 14 13 17 17 C 1.37878 * 120.00326 * 274.92414 * 15 14 13 18 18 N 1.31517 * 119.99754 * 355.42084 * 17 15 14 19 19 Si 1.86794 * 120.00501 * 175.41824 * 17 15 14 20 20 H 1.48506 * 109.47138 * 59.99993 * 19 17 15 21 21 H 1.48497 * 109.47408 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47174 * 300.00591 * 19 17 15 23 23 C 1.53004 * 117.49255 * 80.49022 * 14 13 12 24 24 C 1.53002 * 117.49534 * 149.14763 * 14 13 12 25 25 N 1.29683 * 110.11188 * 359.68802 * 6 5 4 26 26 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47406 * 300.00678 * 1 2 3 28 28 H 1.09002 * 109.47349 * 60.00225 * 1 2 3 29 29 H 1.08999 * 109.47406 * 239.99322 * 2 1 3 30 30 H 1.09001 * 109.46830 * 119.99707 * 2 1 3 31 31 H 1.07993 * 125.97425 * 359.94111 * 4 3 2 32 32 H 0.96991 * 120.00115 * 179.69213 * 7 6 5 33 33 H 0.97000 * 120.00378 * 5.03168 * 12 10 8 34 34 H 1.09003 * 109.46657 * 64.78033 * 13 12 10 35 35 H 1.08999 * 109.47030 * 304.77858 * 13 12 10 36 36 H 0.96996 * 120.00174 * 184.99818 * 18 17 15 37 37 H 1.09001 * 117.49220 * 214.99471 * 23 14 13 38 38 H 1.08994 * 117.50388 * 0.02562 * 23 14 13 39 39 H 1.09005 * 117.49794 * 359.97438 * 24 14 13 40 40 H 1.09000 * 117.49628 * 144.97784 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8803 1.8865 0.9203 5 16 3.2132 3.5766 0.5507 6 6 2.1713 3.4963 -0.8025 7 7 1.9055 4.5506 -1.6646 8 6 2.4831 5.7509 -1.4593 9 8 3.2362 5.9095 -0.5206 10 6 2.1967 6.8855 -2.3866 11 8 1.3744 6.7549 -3.2694 12 7 2.8516 8.0547 -2.2432 13 6 2.4933 9.2024 -3.0804 14 6 3.4584 10.3569 -2.8031 15 6 3.3935 10.9391 -1.4147 16 1 4.0767 10.5950 -0.6523 17 6 2.4657 11.9152 -1.1191 18 7 1.6983 12.4025 -2.0696 19 14 2.2985 12.5457 0.6313 20 1 3.5895 13.1329 1.0714 21 1 1.2382 13.5840 0.6843 22 1 1.9345 11.4208 1.5299 23 6 4.8258 10.3146 -3.4883 24 6 3.7650 11.3138 -3.9568 25 7 1.6702 2.3050 -0.9095 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.2929 1.3244 1.7450 32 1 1.3041 4.4237 -2.4148 33 1 3.5600 8.1364 -1.5857 34 1 1.4753 9.5165 -2.8498 35 1 2.5573 8.9197 -4.1311 36 1 1.0969 13.1389 -1.8777 37 1 5.6783 10.7080 -2.9347 38 1 5.0377 9.4646 -4.1368 39 1 3.2796 11.1206 -4.9135 40 1 3.9194 12.3646 -3.7116 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430341134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:38 Heat of formation + Delta-G solvation = 0.105871 kcal Electronic energy + Delta-G solvation = -24051.712294 eV Core-core repulsion = 20380.409068 eV Total energy + Delta-G solvation = -3671.303226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04609 -39.92322 -38.60744 -36.86931 -35.65920 -33.65284 -33.05610 -32.04070 -29.50346 -27.47497 -25.83836 -25.22322 -24.21408 -22.54765 -21.38464 -21.11800 -19.89526 -19.37366 -18.31562 -17.95257 -16.89554 -16.39303 -16.27258 -16.09713 -15.18405 -15.04024 -14.80974 -14.60997 -14.29501 -14.06610 -13.78469 -13.44715 -13.36452 -12.82297 -12.79058 -12.23215 -12.03617 -11.82077 -11.69694 -11.48474 -11.06669 -11.02381 -10.99878 -10.87034 -10.59759 -10.31905 -9.88561 -9.79299 -9.53098 -9.32808 -9.18381 -8.66520 -8.52373 -8.42664 -8.28380 -6.15248 -4.25755 0.47479 0.98560 1.40627 1.70719 2.07139 2.64137 3.23983 3.24616 3.29939 3.32554 3.56903 4.26553 4.30302 4.59290 4.78263 5.00112 5.07510 5.11947 5.24558 5.25803 5.41306 5.55934 5.64087 5.81596 5.85233 5.96751 6.08890 6.18999 6.29825 6.35938 6.46242 6.53524 6.65170 6.85190 7.01462 7.21515 7.28821 7.43767 7.60047 7.74129 7.81370 8.21407 8.25516 8.76528 9.42605 10.91633 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019562 B = 0.002760 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.027406 B =10142.766229 C =10681.318242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C 0.093 3.907 4 C -0.321 4.321 5 S 0.246 5.754 6 C 0.244 3.756 7 N -0.600 5.600 8 C 0.508 3.492 9 O -0.480 6.480 10 C 0.506 3.494 11 O -0.528 6.528 12 N -0.658 5.658 13 C 0.158 3.842 14 C 0.020 3.980 15 C -0.504 4.504 16 H 0.062 0.938 17 C 0.074 3.926 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.210 4.210 24 C -0.138 4.138 25 N -0.507 5.507 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.175 0.825 32 H 0.435 0.565 33 H 0.416 0.584 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.263 0.737 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 -19.770 3.435 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.040 4.040 4 C -0.462 4.462 5 S 0.497 5.503 6 C -0.123 4.123 7 N -0.252 5.252 8 C 0.289 3.711 9 O -0.352 6.352 10 C 0.284 3.716 11 O -0.406 6.406 12 N -0.308 5.308 13 C 0.036 3.964 14 C 0.019 3.981 15 C -0.541 4.541 16 H 0.080 0.920 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.247 4.247 24 C -0.176 4.176 25 N -0.230 5.230 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.192 0.808 32 H 0.276 0.724 33 H 0.252 0.748 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.487 -18.770 3.407 19.135 hybrid contribution -0.537 -0.413 0.807 1.054 sum 0.950 -19.184 4.214 19.664 Atomic orbital electron populations 1.21679 0.94338 1.01533 1.02729 1.20127 0.96662 0.88937 1.02872 1.19807 0.96724 0.96601 0.90825 1.27286 1.09474 1.01452 1.07954 1.85030 1.40827 1.04824 1.19639 1.23371 1.00718 0.90590 0.97608 1.42474 1.46546 1.07049 1.29108 1.21057 0.80242 0.83392 0.86420 1.90716 1.33571 1.81169 1.29753 1.19204 0.83790 0.83711 0.84871 1.90777 1.34387 1.82231 1.33223 1.45906 1.36141 1.09621 1.39086 1.21325 1.00714 0.83052 0.91308 1.19019 0.90735 0.94008 0.94329 1.20337 1.17756 1.22363 0.93674 0.91991 1.24991 0.94865 0.96112 0.97055 1.69969 1.24165 1.24668 1.32256 0.86672 0.77867 0.78658 0.84945 1.20169 1.21242 1.20003 1.23047 0.94528 1.01815 1.05298 1.22485 1.01284 0.96690 0.97159 1.66062 1.28376 0.99331 1.29250 0.92409 0.92852 0.91711 0.90295 0.90303 0.80788 0.72418 0.74755 0.90424 0.93011 0.92698 0.90141 0.91596 0.91662 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.81 37.16 0.36 -0.81 16 2 C -0.05 -0.38 6.43 -27.89 -0.18 -0.56 16 3 C 0.09 1.04 6.07 -84.21 -0.51 0.53 16 4 C -0.32 -3.30 11.05 29.09 0.32 -2.98 16 5 S 0.25 3.02 20.21 -107.50 -2.17 0.85 16 6 C 0.24 3.31 8.18 -87.55 -0.72 2.60 16 7 N -0.60 -8.12 5.39 -13.55 -0.07 -8.20 16 8 C 0.51 7.71 7.84 -11.65 -0.09 7.62 16 9 O -0.48 -7.72 13.96 5.47 0.08 -7.65 16 10 C 0.51 8.69 7.88 -11.65 -0.09 8.60 16 11 O -0.53 -9.93 16.47 5.49 0.09 -9.84 16 12 N -0.66 -12.06 5.46 -60.77 -0.33 -12.39 16 13 C 0.16 3.29 5.53 -4.04 -0.02 3.27 16 14 C 0.02 0.44 1.47 -155.66 -0.23 0.21 16 15 C -0.50 -12.53 8.59 -34.44 -0.30 -12.82 16 16 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 17 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 18 N -0.87 -23.37 12.65 55.43 0.70 -22.67 16 19 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.21 -4.15 9.96 -26.69 -0.27 -4.42 16 24 C -0.14 -3.00 9.14 -26.69 -0.24 -3.24 16 25 N -0.51 -6.70 10.39 -11.32 -0.12 -6.82 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 31 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.43 5.38 8.30 -40.82 -0.34 5.04 16 33 H 0.42 7.42 7.83 -40.82 -0.32 7.10 16 34 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 35 H 0.05 1.03 8.05 -51.93 -0.42 0.62 16 36 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 362.39 15.07 5.46 5.46 Total: -1.00 -27.83 362.39 -8.71 -36.54 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.26 Total: 9.72 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.06 Total: -0.19 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.18 Total: -50.08 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.17 Total: -17.49 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.17 Total: 0.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.83 -8.71 -36.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430341134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.649 kcal (2) G-P(sol) polarization free energy of solvation -27.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds