Wall clock time and date at job start Tue Mar 31 2020 13:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47144 * 2 1 4 4 C 1.33532 * 122.71814 * 124.99618 * 3 2 1 5 5 S 1.76177 * 108.05573 * 179.74316 * 4 3 2 6 6 C 1.70974 * 90.33890 * 0.30454 * 5 4 3 7 7 N 1.38749 * 124.94677 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99679 * 359.69253 * 7 6 5 9 9 O 1.21382 * 119.99988 * 0.02562 * 8 7 6 10 10 C 1.49306 * 119.99732 * 180.02562 * 8 7 6 11 11 O 1.21355 * 120.00269 * 5.08833 * 10 8 7 12 12 N 1.34778 * 119.99753 * 185.09230 * 10 8 7 13 13 C 1.46502 * 120.00007 * 185.03594 * 12 10 8 14 14 C 1.53005 * 109.47051 * 184.77327 * 13 12 10 15 15 C 1.50691 * 115.55309 * 294.81962 * 14 13 12 16 16 H 1.07998 * 120.00212 * 95.20123 * 15 14 13 17 17 C 1.37878 * 120.00326 * 274.92414 * 15 14 13 18 18 N 1.31517 * 119.99754 * 355.42084 * 17 15 14 19 19 Si 1.86794 * 120.00501 * 175.41824 * 17 15 14 20 20 H 1.48506 * 109.47138 * 59.99993 * 19 17 15 21 21 H 1.48497 * 109.47408 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47174 * 300.00591 * 19 17 15 23 23 C 1.53004 * 117.49255 * 80.49022 * 14 13 12 24 24 C 1.53002 * 117.49534 * 149.14763 * 14 13 12 25 25 N 1.29683 * 110.11188 * 359.68802 * 6 5 4 26 26 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47406 * 300.00678 * 1 2 3 28 28 H 1.09002 * 109.47349 * 60.00225 * 1 2 3 29 29 H 1.08999 * 109.47406 * 239.99322 * 2 1 3 30 30 H 1.09001 * 109.46830 * 119.99707 * 2 1 3 31 31 H 1.07993 * 125.97425 * 359.94111 * 4 3 2 32 32 H 0.96991 * 120.00115 * 179.69213 * 7 6 5 33 33 H 0.97000 * 120.00378 * 5.03168 * 12 10 8 34 34 H 1.09003 * 109.46657 * 64.78033 * 13 12 10 35 35 H 1.08999 * 109.47030 * 304.77858 * 13 12 10 36 36 H 0.96996 * 120.00174 * 184.99818 * 18 17 15 37 37 H 1.09001 * 117.49220 * 214.99471 * 23 14 13 38 38 H 1.08994 * 117.50388 * 0.02562 * 23 14 13 39 39 H 1.09005 * 117.49794 * 359.97438 * 24 14 13 40 40 H 1.09000 * 117.49628 * 144.97784 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8803 1.8865 0.9203 5 16 3.2132 3.5766 0.5507 6 6 2.1713 3.4963 -0.8025 7 7 1.9055 4.5506 -1.6646 8 6 2.4831 5.7509 -1.4593 9 8 3.2362 5.9095 -0.5206 10 6 2.1967 6.8855 -2.3866 11 8 1.3744 6.7549 -3.2694 12 7 2.8516 8.0547 -2.2432 13 6 2.4933 9.2024 -3.0804 14 6 3.4584 10.3569 -2.8031 15 6 3.3935 10.9391 -1.4147 16 1 4.0767 10.5950 -0.6523 17 6 2.4657 11.9152 -1.1191 18 7 1.6983 12.4025 -2.0696 19 14 2.2985 12.5457 0.6313 20 1 3.5895 13.1329 1.0714 21 1 1.2382 13.5840 0.6843 22 1 1.9345 11.4208 1.5299 23 6 4.8258 10.3146 -3.4883 24 6 3.7650 11.3138 -3.9568 25 7 1.6702 2.3050 -0.9095 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.2929 1.3244 1.7450 32 1 1.3041 4.4237 -2.4148 33 1 3.5600 8.1364 -1.5857 34 1 1.4753 9.5165 -2.8498 35 1 2.5573 8.9197 -4.1311 36 1 1.0969 13.1389 -1.8777 37 1 5.6783 10.7080 -2.9347 38 1 5.0377 9.4646 -4.1368 39 1 3.2796 11.1206 -4.9135 40 1 3.9194 12.3646 -3.7116 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430341134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:37 Heat of formation + Delta-G solvation = -17.186750 kcal Electronic energy + Delta-G solvation = -24052.462158 eV Core-core repulsion = 20380.409068 eV Total energy + Delta-G solvation = -3672.053090 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.26089 -40.93209 -39.96353 -38.52830 -36.76323 -35.10346 -33.96733 -33.87593 -30.38770 -28.95351 -27.54871 -26.53740 -25.17823 -23.54726 -22.92197 -22.36009 -21.45433 -20.74048 -19.36155 -19.24122 -18.06807 -17.89704 -17.49834 -17.40536 -16.67749 -16.46650 -16.20909 -15.79836 -15.43002 -15.33384 -14.96726 -14.67781 -14.47899 -14.27636 -13.75218 -13.62163 -13.49867 -13.22111 -12.95355 -12.81432 -12.69459 -12.39957 -12.22793 -12.01470 -11.93716 -11.73877 -11.42423 -10.98042 -10.96115 -10.84044 -10.46067 -10.28249 -10.20772 -9.99643 -9.36135 -8.10555 -6.24309 -0.56009 0.03472 0.23637 0.70428 0.99221 1.43007 1.45815 1.50979 1.64626 1.99505 2.30273 2.42598 3.14889 3.19034 3.42000 3.55444 4.11014 4.18633 4.27953 4.42599 4.51226 4.53532 4.57715 4.62437 4.68088 4.73507 4.88363 5.03514 5.05372 5.12536 5.21257 5.24060 5.29657 5.37706 5.46615 5.54269 5.69815 5.77595 6.08979 6.35567 6.38359 6.67927 6.79008 6.83962 7.45803 8.95656 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019562 B = 0.002760 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.027406 B =10142.766229 C =10681.318242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C 0.073 3.927 4 C -0.298 4.298 5 S 0.234 5.766 6 C 0.217 3.783 7 N -0.591 5.591 8 C 0.518 3.482 9 O -0.490 6.490 10 C 0.512 3.488 11 O -0.544 6.544 12 N -0.660 5.660 13 C 0.173 3.827 14 C -0.003 4.003 15 C -0.509 4.509 16 H 0.060 0.940 17 C 0.029 3.971 18 N -0.903 5.903 19 Si 0.944 3.056 20 H -0.271 1.271 21 H -0.290 1.290 22 H -0.274 1.274 23 C -0.180 4.180 24 C -0.147 4.147 25 N -0.515 5.515 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.208 0.792 32 H 0.438 0.562 33 H 0.419 0.581 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.260 0.740 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 -22.077 4.529 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.059 4.059 4 C -0.438 4.438 5 S 0.484 5.516 6 C -0.149 4.149 7 N -0.243 5.243 8 C 0.298 3.702 9 O -0.363 6.363 10 C 0.291 3.709 11 O -0.423 6.423 12 N -0.309 5.309 13 C 0.050 3.950 14 C -0.003 4.003 15 C -0.546 4.546 16 H 0.078 0.922 17 C -0.172 4.172 18 N -0.540 5.540 19 Si 0.770 3.230 20 H -0.196 1.196 21 H -0.215 1.215 22 H -0.200 1.200 23 C -0.217 4.217 24 C -0.185 4.185 25 N -0.239 5.239 26 H 0.096 0.904 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.225 0.775 32 H 0.280 0.720 33 H 0.256 0.744 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.363 -21.116 4.508 21.720 hybrid contribution -0.800 0.166 0.495 0.955 sum 1.563 -20.949 5.003 21.595 Atomic orbital electron populations 1.21656 0.94526 1.02469 1.01416 1.20268 0.96438 0.87242 1.04474 1.20366 0.97238 0.97637 0.90686 1.27646 1.08091 1.00008 1.08067 1.85030 1.40558 1.06755 1.19247 1.23476 1.02191 0.90773 0.98446 1.42263 1.46104 1.06678 1.29209 1.20407 0.80538 0.83324 0.85889 1.90723 1.34181 1.81442 1.29970 1.19431 0.82934 0.83840 0.84687 1.90766 1.34912 1.82640 1.34029 1.45757 1.36587 1.09480 1.39124 1.20927 0.98521 0.83453 0.92057 1.19060 0.92967 0.94806 0.93508 1.20638 1.17121 1.21905 0.94955 0.92152 1.25619 0.94985 0.96762 0.99841 1.70071 1.25025 1.25257 1.33674 0.85837 0.77728 0.77952 0.81464 1.19631 1.21531 1.19971 1.23034 0.93184 1.01410 1.04073 1.22407 1.02907 0.95688 0.97482 1.66077 1.28316 0.99484 1.30027 0.90367 0.93394 0.93760 0.89806 0.87546 0.77474 0.72019 0.74399 0.93686 0.92126 0.93078 0.89918 0.89038 0.90598 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.81 71.98 0.71 -1.34 16 2 C -0.04 -0.60 6.43 29.85 0.19 -0.41 16 3 C 0.07 1.47 6.07 41.48 0.25 1.72 16 4 C -0.30 -5.27 11.05 66.75 0.74 -4.54 16 5 S 0.23 5.41 20.21 -56.49 -1.14 4.27 16 6 C 0.22 5.72 8.18 179.27 1.47 7.18 16 7 N -0.59 -15.78 5.39 -315.12 -1.70 -17.48 16 8 C 0.52 15.51 7.84 87.22 0.68 16.19 16 9 O -0.49 -15.47 13.96 -3.35 -0.05 -15.52 16 10 C 0.51 17.46 7.88 87.22 0.69 18.14 16 11 O -0.54 -20.44 16.47 -3.26 -0.05 -20.50 16 12 N -0.66 -24.01 5.46 -464.55 -2.54 -26.55 16 13 C 0.17 7.23 5.53 86.38 0.48 7.71 16 14 C 0.00 -0.12 1.47 -52.93 -0.08 -0.20 16 15 C -0.51 -25.31 8.59 25.60 0.22 -25.09 16 16 H 0.06 2.96 7.82 -2.91 -0.02 2.93 16 17 C 0.03 1.51 5.43 84.65 0.46 1.97 16 18 N -0.90 -49.15 12.65 21.45 0.27 -48.88 16 19 Si 0.94 41.70 29.54 68.60 2.03 43.73 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 C -0.18 -6.84 9.96 30.62 0.30 -6.54 16 24 C -0.15 -6.34 9.14 30.62 0.28 -6.06 16 25 N -0.52 -13.05 10.39 -189.74 -1.97 -15.02 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.04 0.81 8.08 -2.39 -0.02 0.79 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 0.86 8.03 -2.39 -0.02 0.84 16 31 H 0.21 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.44 10.79 8.30 -92.71 -0.77 10.02 16 33 H 0.42 14.75 7.83 -92.71 -0.73 14.03 16 34 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 36 H 0.26 13.74 8.32 -92.71 -0.77 12.97 16 37 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 40 H 0.06 3.10 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -59.40 362.39 0.83 -58.57 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.41 Total: 28.63 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.39 Total: 8.74 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -5.94 Total: -107.92 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.10 Total: -36.01 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -1.14 Total: 4.27 kcal Total: -59.40 0.83 -58.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430341134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.383 kcal (2) G-P(sol) polarization free energy of solvation -59.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds