Wall clock time and date at job start Tue Mar 31 2020 13:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47222 * 2 1 4 4 C 1.33528 * 125.97053 * 89.99988 * 3 2 1 5 5 N 1.31917 * 114.56485 * 179.97438 * 4 3 2 6 6 C 1.29678 * 116.92590 * 359.97438 * 5 4 3 7 7 N 1.38750 * 124.94475 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99683 * 0.02947 * 7 6 5 9 9 O 1.21386 * 120.00054 * 359.97438 * 8 7 6 10 10 C 1.49309 * 119.99742 * 180.02562 * 8 7 6 11 11 O 1.21358 * 119.99938 * 5.09034 * 10 8 7 12 12 N 1.34782 * 119.99495 * 185.09625 * 10 8 7 13 13 C 1.46504 * 119.99412 * 184.55800 * 12 10 8 14 14 C 1.52998 * 109.46895 * 184.69909 * 13 12 10 15 15 C 1.50701 * 115.54961 * 294.80049 * 14 13 12 16 16 H 1.08003 * 119.99739 * 121.53273 * 15 14 13 17 17 C 1.37877 * 120.00103 * 301.24868 * 15 14 13 18 18 N 1.31510 * 119.99937 * 173.16127 * 17 15 14 19 19 Si 1.86799 * 119.99883 * 353.16758 * 17 15 14 20 20 H 1.48500 * 109.47036 * 94.23528 * 19 17 15 21 21 H 1.48499 * 109.47042 * 214.24018 * 19 17 15 22 22 H 1.48502 * 109.47299 * 334.23526 * 19 17 15 23 23 C 1.53000 * 117.49725 * 80.46751 * 14 13 12 24 24 C 1.53006 * 117.49973 * 149.12639 * 14 13 12 25 25 S 1.70972 * 110.11231 * 0.24938 * 6 5 4 26 26 H 1.08994 * 109.47345 * 60.00160 * 1 2 3 27 27 H 1.08998 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46819 * 299.99859 * 1 2 3 29 29 H 1.09000 * 109.46819 * 240.00141 * 2 1 3 30 30 H 1.08999 * 109.47072 * 120.00513 * 2 1 3 31 31 H 1.08000 * 122.71807 * 359.97438 * 4 3 2 32 32 H 0.96995 * 120.00218 * 180.02562 * 7 6 5 33 33 H 0.96997 * 120.00110 * 4.56308 * 12 10 8 34 34 H 1.09004 * 109.47133 * 64.70285 * 13 12 10 35 35 H 1.08995 * 109.47446 * 304.69978 * 13 12 10 36 36 H 0.96998 * 119.99842 * 180.02562 * 18 17 15 37 37 H 1.09004 * 117.50172 * 215.00320 * 23 14 13 38 38 H 1.09002 * 117.50057 * 0.02581 * 23 14 13 39 39 H 1.08998 * 117.49384 * 359.97438 * 24 14 13 40 40 H 1.08996 * 117.49661 * 144.97325 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2938 2.1602 1.0807 5 7 2.7254 3.3792 0.8198 6 6 2.8419 3.7060 -0.4297 7 7 3.2783 4.9396 -0.8911 8 6 3.6193 5.9049 -0.0144 9 8 3.5442 5.6951 1.1788 10 6 4.0883 7.2326 -0.5109 11 8 4.0750 7.4749 -1.7000 12 7 4.5265 8.1618 0.3615 13 6 4.8923 9.4983 -0.1142 14 6 5.4633 10.3144 1.0471 15 6 4.4968 10.6236 2.1613 16 1 4.7136 10.3016 3.1691 17 6 3.3385 11.3225 1.8950 18 7 2.4323 11.4761 2.8356 19 14 3.0565 12.0512 0.1983 20 1 2.2695 11.0983 -0.6250 21 1 2.3102 13.3287 0.3260 22 1 4.3656 12.3059 -0.4549 23 6 6.9260 10.0750 1.4269 24 6 6.5212 11.3692 0.7165 25 16 2.3724 2.3981 -1.4258 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.1626 1.7903 2.0868 32 1 3.3380 5.1074 -1.8446 33 1 4.5998 7.9456 1.3042 34 1 4.0078 9.9981 -0.5092 35 1 5.6421 9.4115 -0.9005 36 1 1.6173 11.9675 2.6482 37 1 7.1892 10.1412 2.4826 38 1 7.4816 9.3364 0.8490 39 1 6.8107 11.4813 -0.3283 40 1 6.5178 12.2869 1.3046 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430363288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:31 Heat of formation + Delta-G solvation = 11.182457 kcal Electronic energy + Delta-G solvation = -24171.458650 eV Core-core repulsion = 20500.635740 eV Total energy + Delta-G solvation = -3670.822909 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93299 -39.67219 -38.34563 -37.10049 -35.62712 -34.12148 -33.45956 -32.23992 -28.89594 -27.60715 -26.16482 -25.28268 -23.85885 -22.86816 -21.67907 -20.93955 -19.74377 -19.58885 -18.75635 -17.54218 -16.98613 -16.38201 -16.13618 -16.07785 -15.31257 -15.03330 -14.94175 -14.67215 -14.36438 -14.00270 -13.98686 -13.63345 -13.28987 -12.99030 -12.79377 -12.40796 -12.23529 -12.00251 -11.97087 -11.58554 -11.18938 -11.10756 -10.94168 -10.75967 -10.63546 -10.34778 -9.99009 -9.63649 -9.45577 -9.30861 -9.24114 -8.95437 -8.56980 -8.53093 -8.39310 -6.21131 -4.23391 0.44217 0.68911 1.40262 1.61189 2.36849 2.74561 3.21663 3.33065 3.36961 3.40406 3.52594 4.32471 4.37210 4.50478 4.66487 4.69096 4.89467 4.92155 5.15811 5.18619 5.33756 5.49184 5.54881 5.65138 5.68933 5.83413 5.84106 6.02847 6.03541 6.05475 6.28994 6.41578 6.58412 6.60502 6.70937 6.86025 7.05144 7.40164 7.60730 7.74710 7.88795 8.24716 8.38157 8.82137 9.41084 10.89926 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021932 B = 0.002761 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.362851 B =10139.298598 C =10382.137356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.039 4.039 3 C -0.242 4.242 4 C 0.070 3.930 5 N -0.473 5.473 6 C 0.271 3.729 7 N -0.616 5.616 8 C 0.503 3.497 9 O -0.438 6.438 10 C 0.505 3.495 11 O -0.537 6.537 12 N -0.659 5.659 13 C 0.148 3.852 14 C -0.019 4.019 15 C -0.492 4.492 16 H 0.081 0.919 17 C 0.083 3.917 18 N -0.887 5.887 19 Si 0.867 3.133 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.251 1.251 23 C -0.179 4.179 24 C -0.185 4.185 25 S 0.125 5.875 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.433 0.567 33 H 0.422 0.578 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.267 0.733 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.194 -20.919 -9.494 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.079 4.079 3 C -0.364 4.364 4 C -0.081 4.081 5 N -0.194 5.194 6 C -0.097 4.097 7 N -0.269 5.269 8 C 0.281 3.719 9 O -0.303 6.303 10 C 0.283 3.717 11 O -0.416 6.416 12 N -0.309 5.309 13 C 0.026 3.974 14 C -0.021 4.021 15 C -0.529 4.529 16 H 0.099 0.901 17 C -0.121 4.121 18 N -0.522 5.522 19 Si 0.694 3.306 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.174 1.174 23 C -0.217 4.217 24 C -0.223 4.223 25 S 0.376 5.624 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.196 0.804 32 H 0.272 0.728 33 H 0.259 0.741 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.319 -20.385 -10.030 22.721 hybrid contribution -0.402 0.319 -0.038 0.514 sum -0.720 -20.066 -10.068 22.461 Atomic orbital electron populations 1.21824 0.94319 1.02003 1.02640 1.19925 0.96029 0.88605 1.03368 1.25771 1.14052 1.02783 0.93787 1.21596 0.98916 0.87472 1.00165 1.66572 1.19222 1.17759 1.15841 1.23564 1.01716 0.92109 0.92338 1.42723 1.63724 1.08580 1.11909 1.20738 0.79176 0.85368 0.86612 1.90914 1.45532 1.79265 1.14612 1.19594 0.80414 0.84903 0.86754 1.90731 1.55309 1.80179 1.15418 1.45740 1.60971 1.11772 1.12434 1.21360 0.99242 0.80447 0.96369 1.19574 0.89111 0.97582 0.95799 1.20268 1.02567 1.36448 0.93652 0.90129 1.24941 0.95278 0.95149 0.96778 1.69891 1.08319 1.40414 1.33624 0.87058 0.79495 0.78816 0.85200 1.20443 1.21696 1.17436 1.22808 0.99084 0.99444 1.00320 1.23077 1.06400 0.93933 0.98934 1.83883 1.63483 1.04910 1.10088 0.92506 0.91968 0.92130 0.90744 0.89618 0.80443 0.72760 0.74062 0.91830 0.92096 0.92349 0.89409 0.90770 0.91032 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.04 -0.24 6.47 -27.88 -0.18 -0.42 16 3 C -0.24 -2.25 5.84 -35.96 -0.21 -2.46 16 4 C 0.07 0.81 11.24 -19.16 -0.22 0.59 16 5 N -0.47 -7.26 8.64 -15.17 -0.13 -7.39 16 6 C 0.27 3.68 8.01 -87.55 -0.70 2.98 16 7 N -0.62 -8.51 5.39 -13.55 -0.07 -8.58 16 8 C 0.50 8.61 7.84 -11.65 -0.09 8.52 16 9 O -0.44 -8.71 15.12 5.47 0.08 -8.63 16 10 C 0.50 9.26 7.88 -11.65 -0.09 9.17 16 11 O -0.54 -10.26 16.47 5.49 0.09 -10.17 16 12 N -0.66 -12.94 5.46 -60.78 -0.33 -13.27 16 13 C 0.15 3.08 5.08 -4.04 -0.02 3.06 16 14 C -0.02 -0.42 0.85 -155.66 -0.13 -0.55 16 15 C -0.49 -12.95 9.19 -34.44 -0.32 -13.26 16 16 H 0.08 2.32 8.06 -52.48 -0.42 1.89 16 17 C 0.08 2.28 5.46 -17.82 -0.10 2.18 16 18 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 19 Si 0.87 20.95 24.69 -169.99 -4.20 16.75 16 20 H -0.28 -6.79 6.96 56.52 0.39 -6.40 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.25 -5.64 6.11 56.52 0.35 -5.29 16 23 C -0.18 -3.38 9.96 -26.69 -0.27 -3.65 16 24 C -0.19 -3.65 8.69 -26.69 -0.23 -3.88 16 25 S 0.13 1.20 23.22 -107.50 -2.50 -1.30 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.43 4.80 8.30 -40.82 -0.34 4.46 16 33 H 0.42 8.38 7.83 -40.82 -0.32 8.06 16 34 H 0.06 1.44 4.27 -51.93 -0.22 1.22 16 35 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -32.23 355.68 -8.26 -40.49 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.15 Total: 10.44 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.19 Total: 1.77 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.24 Total: -54.71 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.17 Total: -18.80 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.20 Total: 16.75 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.50 Total: -1.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.23 -8.26 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430363288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.673 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds