Wall clock time and date at job start Tue Mar 31 2020 13:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47222 * 2 1 4 4 C 1.33528 * 125.97053 * 89.99988 * 3 2 1 5 5 N 1.31917 * 114.56485 * 179.97438 * 4 3 2 6 6 C 1.29678 * 116.92590 * 359.97438 * 5 4 3 7 7 N 1.38750 * 124.94475 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99683 * 0.02947 * 7 6 5 9 9 O 1.21386 * 120.00054 * 359.97438 * 8 7 6 10 10 C 1.49309 * 119.99742 * 180.02562 * 8 7 6 11 11 O 1.21358 * 119.99938 * 5.09034 * 10 8 7 12 12 N 1.34782 * 119.99495 * 185.09625 * 10 8 7 13 13 C 1.46504 * 119.99412 * 184.55800 * 12 10 8 14 14 C 1.52998 * 109.46895 * 184.69909 * 13 12 10 15 15 C 1.50701 * 115.54961 * 294.80049 * 14 13 12 16 16 H 1.08003 * 119.99739 * 121.53273 * 15 14 13 17 17 C 1.37877 * 120.00103 * 301.24868 * 15 14 13 18 18 N 1.31510 * 119.99937 * 173.16127 * 17 15 14 19 19 Si 1.86799 * 119.99883 * 353.16758 * 17 15 14 20 20 H 1.48500 * 109.47036 * 94.23528 * 19 17 15 21 21 H 1.48499 * 109.47042 * 214.24018 * 19 17 15 22 22 H 1.48502 * 109.47299 * 334.23526 * 19 17 15 23 23 C 1.53000 * 117.49725 * 80.46751 * 14 13 12 24 24 C 1.53006 * 117.49973 * 149.12639 * 14 13 12 25 25 S 1.70972 * 110.11231 * 0.24938 * 6 5 4 26 26 H 1.08994 * 109.47345 * 60.00160 * 1 2 3 27 27 H 1.08998 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46819 * 299.99859 * 1 2 3 29 29 H 1.09000 * 109.46819 * 240.00141 * 2 1 3 30 30 H 1.08999 * 109.47072 * 120.00513 * 2 1 3 31 31 H 1.08000 * 122.71807 * 359.97438 * 4 3 2 32 32 H 0.96995 * 120.00218 * 180.02562 * 7 6 5 33 33 H 0.96997 * 120.00110 * 4.56308 * 12 10 8 34 34 H 1.09004 * 109.47133 * 64.70285 * 13 12 10 35 35 H 1.08995 * 109.47446 * 304.69978 * 13 12 10 36 36 H 0.96998 * 119.99842 * 180.02562 * 18 17 15 37 37 H 1.09004 * 117.50172 * 215.00320 * 23 14 13 38 38 H 1.09002 * 117.50057 * 0.02581 * 23 14 13 39 39 H 1.08998 * 117.49384 * 359.97438 * 24 14 13 40 40 H 1.08996 * 117.49661 * 144.97325 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2938 2.1602 1.0807 5 7 2.7254 3.3792 0.8198 6 6 2.8419 3.7060 -0.4297 7 7 3.2783 4.9396 -0.8911 8 6 3.6193 5.9049 -0.0144 9 8 3.5442 5.6951 1.1788 10 6 4.0883 7.2326 -0.5109 11 8 4.0750 7.4749 -1.7000 12 7 4.5265 8.1618 0.3615 13 6 4.8923 9.4983 -0.1142 14 6 5.4633 10.3144 1.0471 15 6 4.4968 10.6236 2.1613 16 1 4.7136 10.3016 3.1691 17 6 3.3385 11.3225 1.8950 18 7 2.4323 11.4761 2.8356 19 14 3.0565 12.0512 0.1983 20 1 2.2695 11.0983 -0.6250 21 1 2.3102 13.3287 0.3260 22 1 4.3656 12.3059 -0.4549 23 6 6.9260 10.0750 1.4269 24 6 6.5212 11.3692 0.7165 25 16 2.3724 2.3981 -1.4258 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.1626 1.7903 2.0868 32 1 3.3380 5.1074 -1.8446 33 1 4.5998 7.9456 1.3042 34 1 4.0078 9.9981 -0.5092 35 1 5.6421 9.4115 -0.9005 36 1 1.6173 11.9675 2.6482 37 1 7.1892 10.1412 2.4826 38 1 7.4816 9.3364 0.8490 39 1 6.8107 11.4813 -0.3283 40 1 6.5178 12.2869 1.3046 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430363288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:30 Heat of formation + Delta-G solvation = -11.909404 kcal Electronic energy + Delta-G solvation = -24172.459988 eV Core-core repulsion = 20500.635740 eV Total energy + Delta-G solvation = -3671.824248 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.18350 -40.82308 -39.68356 -38.71266 -36.73537 -35.17301 -34.64059 -34.31301 -29.83597 -29.05029 -27.71299 -26.75607 -24.89904 -23.74764 -23.18321 -22.09394 -21.32562 -20.71378 -20.20100 -18.77340 -18.29507 -17.87596 -17.47010 -17.38180 -16.95518 -16.43376 -16.07559 -15.76422 -15.49195 -15.19577 -14.93297 -14.87548 -14.82640 -14.55385 -14.15989 -13.91138 -13.43939 -13.07856 -12.96838 -12.68309 -12.66192 -12.46617 -12.17729 -12.09925 -11.98749 -11.74013 -11.52840 -11.22428 -11.05478 -10.77608 -10.51007 -10.33034 -10.27803 -10.16242 -9.31303 -8.33201 -6.37433 -0.53496 -0.20904 0.31897 0.56772 1.16719 1.30017 1.36141 1.46829 1.74244 2.08330 2.30399 2.32014 2.91613 3.15783 3.37850 3.60077 3.88804 3.92819 4.13989 4.22168 4.41324 4.43663 4.45925 4.55945 4.63761 4.67547 4.82498 4.92459 5.00020 5.07091 5.07913 5.14830 5.20258 5.25997 5.39459 5.52169 5.55760 5.65049 6.10541 6.26720 6.42659 6.69491 6.74382 6.86783 7.29747 8.81818 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021932 B = 0.002761 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.362851 B =10139.298598 C =10382.137356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 C -0.221 4.221 4 C 0.038 3.962 5 N -0.515 5.515 6 C 0.224 3.776 7 N -0.602 5.602 8 C 0.508 3.492 9 O -0.476 6.476 10 C 0.509 3.491 11 O -0.542 6.542 12 N -0.667 5.667 13 C 0.154 3.846 14 C -0.049 4.049 15 C -0.482 4.482 16 H 0.038 0.962 17 C 0.027 3.973 18 N -0.941 5.941 19 Si 0.923 3.077 20 H -0.283 1.283 21 H -0.296 1.296 22 H -0.218 1.218 23 C -0.159 4.159 24 C -0.174 4.174 25 S 0.200 5.800 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.191 0.809 32 H 0.444 0.556 33 H 0.418 0.582 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.265 0.735 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -22.986 -12.426 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.081 4.081 3 C -0.344 4.344 4 C -0.112 4.112 5 N -0.237 5.237 6 C -0.142 4.142 7 N -0.256 5.256 8 C 0.286 3.714 9 O -0.345 6.345 10 C 0.289 3.711 11 O -0.421 6.421 12 N -0.317 5.317 13 C 0.031 3.969 14 C -0.050 4.050 15 C -0.520 4.520 16 H 0.057 0.943 17 C -0.171 4.171 18 N -0.580 5.580 19 Si 0.748 3.252 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.140 1.140 23 C -0.196 4.196 24 C -0.212 4.212 25 S 0.452 5.548 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.208 0.792 32 H 0.286 0.714 33 H 0.254 0.746 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.637 -22.481 -13.022 25.988 hybrid contribution -0.707 0.723 0.899 1.353 sum -0.069 -21.758 -12.123 24.907 Atomic orbital electron populations 1.21825 0.93829 1.03095 1.01983 1.20139 0.96262 0.86552 1.05103 1.26360 1.10815 1.03835 0.93352 1.21817 1.00700 0.87037 1.01616 1.66499 1.19687 1.19792 1.17694 1.23755 1.04135 0.92930 0.93376 1.42479 1.62859 1.08402 1.11911 1.20446 0.79069 0.85413 0.86432 1.90899 1.47693 1.79871 1.15999 1.19756 0.79733 0.85196 0.86447 1.90714 1.55421 1.80490 1.15515 1.45769 1.61659 1.11875 1.12423 1.21247 0.98945 0.80450 0.96256 1.19438 0.89673 1.00336 0.95560 1.20415 1.03319 1.34798 0.93452 0.94331 1.25708 0.95248 0.95946 1.00248 1.70040 1.09271 1.42638 1.36068 0.86163 0.80598 0.77373 0.81035 1.21026 1.22325 1.14030 1.22863 0.96497 0.99653 1.00575 1.23125 1.03889 0.93488 1.00665 1.83593 1.61221 1.01874 1.08156 0.92967 0.90066 0.93032 0.88947 0.87956 0.79246 0.71410 0.74555 0.93795 0.89489 0.92614 0.90015 0.87807 0.88027 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 71.98 0.71 -0.63 16 2 C -0.04 -0.37 6.47 29.85 0.19 -0.18 16 3 C -0.22 -3.65 5.84 24.62 0.14 -3.51 16 4 C 0.04 0.87 11.24 83.61 0.94 1.81 16 5 N -0.51 -15.95 8.64 -201.91 -1.74 -17.70 16 6 C 0.22 5.98 8.01 179.28 1.44 7.42 16 7 N -0.60 -16.47 5.39 -315.12 -1.70 -18.17 16 8 C 0.51 17.66 7.84 87.22 0.68 18.35 16 9 O -0.48 -19.69 15.12 -3.36 -0.05 -19.74 16 10 C 0.51 18.52 7.88 87.22 0.69 19.20 16 11 O -0.54 -19.98 16.47 -3.27 -0.05 -20.04 16 12 N -0.67 -26.11 5.46 -464.55 -2.54 -28.65 16 13 C 0.15 6.13 5.08 86.38 0.44 6.57 16 14 C -0.05 -2.07 0.85 -52.93 -0.04 -2.12 16 15 C -0.48 -26.03 9.19 25.60 0.24 -25.79 16 16 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 17 C 0.03 1.54 5.46 84.66 0.46 2.00 16 18 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 19 Si 0.92 43.51 24.69 68.60 1.69 45.20 16 20 H -0.28 -13.52 6.96 99.48 0.69 -12.83 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.22 -9.02 6.11 99.48 0.61 -8.41 16 23 C -0.16 -5.62 9.96 30.62 0.30 -5.31 16 24 C -0.17 -6.32 8.69 30.62 0.27 -6.05 16 25 S 0.20 3.36 23.22 -56.49 -1.31 2.05 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.44 9.42 8.30 -92.71 -0.77 8.65 16 33 H 0.42 17.06 7.83 -92.71 -0.73 16.33 16 34 H 0.04 1.93 4.27 -2.38 -0.01 1.92 16 35 H 0.09 3.01 8.06 -2.39 -0.02 2.99 16 36 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -72.91 355.68 0.55 -72.36 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.51 Total: 30.85 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 6.46 Total: 11.76 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -5.68 Total: -122.45 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.10 Total: -39.77 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.69 Total: 45.20 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.31 Total: 2.05 kcal Total: -72.91 0.55 -72.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430363288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.454 kcal (2) G-P(sol) polarization free energy of solvation -72.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds