Wall clock time and date at job start Tue Mar 31 2020 14:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47267 * 2 1 4 4 H 1.09004 * 109.46419 * 304.89948 * 3 2 1 5 5 C 1.50701 * 109.46852 * 184.90380 * 3 2 1 6 6 H 1.08001 * 119.99845 * 245.44714 * 5 3 2 7 7 C 1.37880 * 120.00177 * 65.45342 * 5 3 2 8 8 N 1.31514 * 120.00005 * 9.46369 * 7 5 3 9 9 Si 1.86795 * 120.00093 * 189.46716 * 7 5 3 10 10 H 1.48497 * 109.47249 * 84.98688 * 9 7 5 11 11 H 1.48498 * 109.47463 * 204.99262 * 9 7 5 12 12 H 1.48505 * 109.47056 * 324.99423 * 9 7 5 13 13 N 1.46495 * 109.47263 * 64.90127 * 3 2 1 14 14 C 1.34776 * 120.00038 * 275.00245 * 13 3 2 15 15 O 1.21372 * 119.99979 * 359.97438 * 14 13 3 16 16 C 1.49260 * 120.00101 * 180.27365 * 14 13 3 17 17 O 1.21424 * 119.99932 * 359.72564 * 16 14 13 18 18 N 1.34770 * 120.00275 * 179.72428 * 16 14 13 19 19 C 1.39424 * 120.00305 * 180.02562 * 18 16 14 20 20 S 1.76198 * 126.07500 * 0.02562 * 19 18 16 21 21 C 1.70956 * 90.33115 * 180.02562 * 20 19 18 22 22 N 1.28969 * 110.32605 * 359.97438 * 21 20 19 23 23 C 1.31793 * 117.20978 * 359.71704 * 22 21 20 24 24 C 1.50701 * 122.85523 * 180.30859 * 23 22 21 25 25 C 1.52996 * 117.50002 * 8.84943 * 24 23 22 26 26 C 1.52995 * 117.49854 * 300.22505 * 24 23 22 27 27 H 1.09001 * 109.46933 * 300.00113 * 1 2 3 28 28 H 1.08992 * 109.47462 * 60.00150 * 1 2 3 29 29 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46933 * 239.99886 * 2 1 3 31 31 H 1.09005 * 109.47362 * 120.00150 * 2 1 3 32 32 H 0.96996 * 120.00032 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99693 * 94.99668 * 13 3 2 34 34 H 0.97001 * 120.00153 * 359.97438 * 18 16 14 35 35 H 1.07996 * 124.83622 * 180.02562 * 21 20 19 36 36 H 1.09004 * 115.54766 * 154.55446 * 24 23 22 37 37 H 1.08998 * 117.49975 * 359.97438 * 25 24 23 38 38 H 1.09001 * 117.49984 * 145.02421 * 25 24 23 39 39 H 1.09003 * 117.49682 * 214.97974 * 26 24 23 40 40 H 1.08997 * 117.50249 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9810 -0.8429 5 6 3.5421 1.4441 -0.1215 6 1 4.1494 1.8090 0.6937 7 6 4.1412 0.9800 -1.2733 8 7 3.4096 0.7113 -2.3327 9 14 5.9919 0.7326 -1.3292 10 1 6.3289 -0.6067 -0.7836 11 1 6.4618 0.8273 -2.7347 12 1 6.6562 1.7807 -0.5135 13 7 1.6505 2.0982 1.2507 14 6 0.4330 2.6652 1.3636 15 8 -0.3405 2.6329 0.4288 16 6 0.0384 3.3386 2.6359 17 8 0.8123 3.3713 3.5709 18 7 -1.1769 3.9104 2.7468 19 6 -1.5454 4.5400 3.9351 20 16 -0.5536 4.6825 5.3844 21 6 -1.8083 5.5369 6.1709 22 7 -2.8227 5.6669 5.3852 23 6 -2.7187 5.1517 4.1766 24 6 -3.8227 5.2359 3.1542 25 6 -5.0219 6.1280 3.4812 26 6 -5.1692 4.6055 3.5149 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8310 0.3845 -3.1429 33 1 2.2688 2.1242 1.9977 34 1 -1.7951 3.8847 1.9998 35 1 -1.7582 5.9147 7.1814 36 1 -3.5044 5.1818 2.1131 37 1 -5.0126 6.6537 4.4360 38 1 -5.4928 6.6610 2.6551 39 1 -5.7370 4.1369 2.7111 40 1 -5.2566 4.1295 4.4915 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439552073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:51 Heat of formation + Delta-G solvation = -0.789963 kcal Electronic energy + Delta-G solvation = -24604.561088 eV Core-core repulsion = 20933.219016 eV Total energy + Delta-G solvation = -3671.342072 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.90642 -40.00319 -38.45061 -36.61276 -35.74513 -34.95597 -32.49570 -31.20023 -29.66990 -27.40852 -25.88477 -24.24560 -23.22183 -22.92075 -22.48203 -20.85223 -19.87298 -19.61472 -18.64137 -17.93966 -16.90619 -16.57998 -16.10471 -15.86236 -15.45938 -15.15578 -14.80169 -14.47964 -14.45665 -14.04638 -13.92143 -13.49978 -12.83824 -12.51276 -12.28517 -11.74972 -11.66404 -11.65504 -11.51226 -11.49488 -11.40370 -11.10219 -10.92327 -10.88360 -10.54589 -10.50466 -10.34660 -9.87578 -9.67994 -9.28058 -9.26279 -9.09522 -8.61552 -8.23150 -8.15822 -6.26317 -4.32549 0.48150 0.97973 1.63039 1.67389 2.45048 2.57218 3.20339 3.27482 3.29271 3.48361 3.77373 3.91696 4.10413 4.27562 4.49950 4.68614 4.86965 4.92437 5.05954 5.07487 5.22638 5.49690 5.61244 5.66004 5.90597 6.03326 6.07652 6.18651 6.20773 6.40095 6.67853 6.81371 6.94562 7.00302 7.13570 7.29708 7.52168 7.55949 7.61655 7.66708 7.88531 8.29112 8.49970 8.76162 9.33227 10.81809 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.002959 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.368697 B = 9461.116017 C =10310.079324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.266 3.734 4 H 0.063 0.937 5 C -0.542 4.542 6 H 0.065 0.935 7 C 0.072 3.928 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.663 5.663 14 C 0.501 3.499 15 O -0.524 6.524 16 C 0.497 3.503 17 O -0.493 6.493 18 N -0.602 5.602 19 C 0.006 3.994 20 S 0.239 5.761 21 C -0.046 4.046 22 N -0.445 5.445 23 C 0.043 3.957 24 C -0.092 4.092 25 C -0.157 4.157 26 C -0.164 4.164 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.028 0.972 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.267 0.733 33 H 0.403 0.597 34 H 0.431 0.569 35 H 0.197 0.803 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 7.283 13.066 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.166 3.834 4 H 0.081 0.919 5 C -0.580 4.580 6 H 0.083 0.917 7 C -0.133 4.133 8 N -0.515 5.515 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.311 5.311 14 C 0.279 3.721 15 O -0.402 6.402 16 C 0.280 3.720 17 O -0.367 6.367 18 N -0.250 5.250 19 C -0.213 4.213 20 S 0.490 5.510 21 C -0.344 4.344 22 N -0.158 5.158 23 C -0.093 4.093 24 C -0.112 4.112 25 C -0.194 4.194 26 C -0.201 4.201 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.271 0.729 35 H 0.214 0.786 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.341 7.120 13.304 18.876 hybrid contribution 0.324 -0.097 -0.637 0.721 sum -11.017 7.023 12.667 18.198 Atomic orbital electron populations 1.21865 0.97978 0.98683 1.01267 1.21890 0.93004 0.99375 1.01809 1.19073 0.95064 0.89152 0.80157 0.91932 1.21133 0.90034 1.44698 1.02178 0.91706 1.24870 0.98769 0.94849 0.94803 1.69967 1.35975 1.43344 1.02186 0.86471 0.84537 0.78871 0.77345 1.20288 1.21092 1.19769 1.46471 1.13082 1.52213 1.19373 1.19244 0.84775 0.81684 0.86425 1.90773 1.51199 1.59425 1.38841 1.21355 0.81175 0.79160 0.90341 1.90693 1.49840 1.56521 1.39612 1.42567 1.17228 1.51888 1.13286 1.23439 0.98688 1.05209 0.93980 1.84943 1.15089 1.49921 1.01037 1.28436 0.94729 1.06240 1.04966 1.66012 1.28504 1.19134 1.02138 1.19116 0.93941 1.02962 0.93302 1.20354 0.86838 1.08031 0.96003 1.22919 0.99488 0.93204 1.03793 1.22987 0.97690 0.96214 1.03254 0.94461 0.92684 0.95269 0.89647 0.94245 0.92354 0.76281 0.72860 0.78588 0.86578 0.87646 0.88589 0.88276 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.53 16 2 C -0.12 -2.73 5.50 -26.73 -0.15 -2.88 16 3 C 0.27 6.28 2.11 -69.08 -0.15 6.14 16 4 H 0.06 1.69 7.52 -51.93 -0.39 1.30 16 5 C -0.54 -13.73 8.66 -34.44 -0.30 -14.02 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.85 5.16 -17.82 -0.09 1.76 16 8 N -0.88 -23.72 12.16 55.43 0.67 -23.04 16 9 Si 0.90 20.00 29.55 -169.99 -5.02 14.97 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.66 -13.23 5.01 -55.43 -0.28 -13.51 16 14 C 0.50 9.29 6.45 -11.68 -0.08 9.21 16 15 O -0.52 -10.56 13.61 5.48 0.07 -10.48 16 16 C 0.50 7.95 7.85 -11.68 -0.09 7.86 16 17 O -0.49 -8.23 14.10 5.43 0.08 -8.15 16 18 N -0.60 -8.22 5.39 -11.10 -0.06 -8.28 16 19 C 0.01 0.07 7.17 -15.41 -0.11 -0.04 16 20 S 0.24 2.83 20.45 -107.50 -2.20 0.63 16 21 C -0.05 -0.48 12.22 51.56 0.63 0.15 16 22 N -0.44 -5.45 9.83 -11.72 -0.12 -5.56 16 23 C 0.04 0.53 6.40 -83.93 -0.54 0.00 16 24 C -0.09 -0.96 5.81 -91.78 -0.53 -1.50 16 25 C -0.16 -1.44 10.09 -26.73 -0.27 -1.71 16 26 C -0.16 -1.51 10.23 -26.73 -0.27 -1.78 16 27 H 0.04 0.72 5.65 -51.93 -0.29 0.43 16 28 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 2.11 6.80 -51.93 -0.35 1.76 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.40 7.48 7.99 -40.82 -0.33 7.16 16 34 H 0.43 5.29 7.18 -40.82 -0.29 4.99 16 35 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.12 1.10 7.40 -51.93 -0.38 0.72 16 37 H 0.11 1.06 7.74 -51.93 -0.40 0.66 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -28.53 350.51 -8.12 -36.65 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.93 Total: 10.84 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.63 Total: 0.66 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.22 Total: -50.40 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.15 Total: -18.63 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.20 Total: 0.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.53 -8.12 -36.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439552073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.861 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds