Wall clock time and date at job start Tue Mar 31 2020 14:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47267 * 2 1 4 4 H 1.09004 * 109.46419 * 304.89948 * 3 2 1 5 5 C 1.50701 * 109.46852 * 184.90380 * 3 2 1 6 6 H 1.08001 * 119.99845 * 245.44714 * 5 3 2 7 7 C 1.37880 * 120.00177 * 65.45342 * 5 3 2 8 8 N 1.31514 * 120.00005 * 9.46369 * 7 5 3 9 9 Si 1.86795 * 120.00093 * 189.46716 * 7 5 3 10 10 H 1.48497 * 109.47249 * 84.98688 * 9 7 5 11 11 H 1.48498 * 109.47463 * 204.99262 * 9 7 5 12 12 H 1.48505 * 109.47056 * 324.99423 * 9 7 5 13 13 N 1.46495 * 109.47263 * 64.90127 * 3 2 1 14 14 C 1.34776 * 120.00038 * 275.00245 * 13 3 2 15 15 O 1.21372 * 119.99979 * 359.97438 * 14 13 3 16 16 C 1.49260 * 120.00101 * 180.27365 * 14 13 3 17 17 O 1.21424 * 119.99932 * 359.72564 * 16 14 13 18 18 N 1.34770 * 120.00275 * 179.72428 * 16 14 13 19 19 C 1.39424 * 120.00305 * 180.02562 * 18 16 14 20 20 S 1.76198 * 126.07500 * 0.02562 * 19 18 16 21 21 C 1.70956 * 90.33115 * 180.02562 * 20 19 18 22 22 N 1.28969 * 110.32605 * 359.97438 * 21 20 19 23 23 C 1.31793 * 117.20978 * 359.71704 * 22 21 20 24 24 C 1.50701 * 122.85523 * 180.30859 * 23 22 21 25 25 C 1.52996 * 117.50002 * 8.84943 * 24 23 22 26 26 C 1.52995 * 117.49854 * 300.22505 * 24 23 22 27 27 H 1.09001 * 109.46933 * 300.00113 * 1 2 3 28 28 H 1.08992 * 109.47462 * 60.00150 * 1 2 3 29 29 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46933 * 239.99886 * 2 1 3 31 31 H 1.09005 * 109.47362 * 120.00150 * 2 1 3 32 32 H 0.96996 * 120.00032 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99693 * 94.99668 * 13 3 2 34 34 H 0.97001 * 120.00153 * 359.97438 * 18 16 14 35 35 H 1.07996 * 124.83622 * 180.02562 * 21 20 19 36 36 H 1.09004 * 115.54766 * 154.55446 * 24 23 22 37 37 H 1.08998 * 117.49975 * 359.97438 * 25 24 23 38 38 H 1.09001 * 117.49984 * 145.02421 * 25 24 23 39 39 H 1.09003 * 117.49682 * 214.97974 * 26 24 23 40 40 H 1.08997 * 117.50249 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9810 -0.8429 5 6 3.5421 1.4441 -0.1215 6 1 4.1494 1.8090 0.6937 7 6 4.1412 0.9800 -1.2733 8 7 3.4096 0.7113 -2.3327 9 14 5.9919 0.7326 -1.3292 10 1 6.3289 -0.6067 -0.7836 11 1 6.4618 0.8273 -2.7347 12 1 6.6562 1.7807 -0.5135 13 7 1.6505 2.0982 1.2507 14 6 0.4330 2.6652 1.3636 15 8 -0.3405 2.6329 0.4288 16 6 0.0384 3.3386 2.6359 17 8 0.8123 3.3713 3.5709 18 7 -1.1769 3.9104 2.7468 19 6 -1.5454 4.5400 3.9351 20 16 -0.5536 4.6825 5.3844 21 6 -1.8083 5.5369 6.1709 22 7 -2.8227 5.6669 5.3852 23 6 -2.7187 5.1517 4.1766 24 6 -3.8227 5.2359 3.1542 25 6 -5.0219 6.1280 3.4812 26 6 -5.1692 4.6055 3.5149 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8310 0.3845 -3.1429 33 1 2.2688 2.1242 1.9977 34 1 -1.7951 3.8847 1.9998 35 1 -1.7582 5.9147 7.1814 36 1 -3.5044 5.1818 2.1131 37 1 -5.0126 6.6537 4.4360 38 1 -5.4928 6.6610 2.6551 39 1 -5.7370 4.1369 2.7111 40 1 -5.2566 4.1295 4.4915 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439552073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:50 Heat of formation + Delta-G solvation = -19.567486 kcal Electronic energy + Delta-G solvation = -24605.375343 eV Core-core repulsion = 20933.219016 eV Total energy + Delta-G solvation = -3672.156327 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14261 -41.06111 -39.88459 -37.39272 -37.29189 -36.29463 -34.33869 -32.93372 -30.67571 -29.20112 -27.03663 -25.62945 -24.58112 -24.06031 -23.19788 -22.29513 -21.38157 -20.88597 -19.96879 -18.91429 -18.35032 -17.81475 -17.47857 -17.32152 -16.99824 -16.31328 -16.03929 -15.93184 -15.38992 -15.19767 -15.04938 -14.87983 -14.63667 -13.94031 -13.48939 -13.38137 -13.32436 -13.04717 -12.87882 -12.63870 -12.57538 -12.41241 -12.34796 -12.21490 -12.13863 -11.71300 -11.65183 -11.30416 -11.16623 -10.86981 -10.56680 -10.49132 -10.03063 -9.90479 -9.16435 -8.22958 -6.35558 -0.52863 0.06108 0.37264 0.71670 1.23416 1.45226 1.46867 1.55711 1.64152 2.08617 2.38232 2.63116 3.00172 3.09584 3.28999 3.41507 3.67814 3.92407 4.13205 4.25996 4.41198 4.44551 4.49793 4.62046 4.66146 4.80513 4.91044 5.00369 5.11361 5.17742 5.20815 5.29156 5.32353 5.34374 5.50325 5.58035 5.69603 5.77443 5.98846 6.28393 6.63582 6.69023 6.71135 7.04341 7.34923 8.85404 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.002959 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.368697 B = 9461.116017 C =10310.079324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 C 0.275 3.725 4 H 0.021 0.979 5 C -0.556 4.556 6 H 0.070 0.930 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.267 1.267 13 N -0.666 5.666 14 C 0.503 3.497 15 O -0.541 6.541 16 C 0.506 3.494 17 O -0.503 6.503 18 N -0.589 5.589 19 C -0.030 4.030 20 S 0.229 5.771 21 C -0.019 4.019 22 N -0.467 5.467 23 C 0.053 3.947 24 C -0.113 4.113 25 C -0.148 4.148 26 C -0.156 4.156 27 H 0.042 0.958 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.267 0.733 33 H 0.410 0.590 34 H 0.435 0.565 35 H 0.235 0.765 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.519 7.818 14.785 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C 0.173 3.827 4 H 0.039 0.961 5 C -0.594 4.594 6 H 0.088 0.912 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.191 1.191 13 N -0.316 5.316 14 C 0.282 3.718 15 O -0.420 6.420 16 C 0.288 3.712 17 O -0.378 6.378 18 N -0.236 5.236 19 C -0.247 4.247 20 S 0.481 5.519 21 C -0.317 4.317 22 N -0.180 5.180 23 C -0.083 4.083 24 C -0.134 4.134 25 C -0.186 4.186 26 C -0.194 4.194 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.246 0.754 34 H 0.277 0.723 35 H 0.251 0.749 36 H 0.141 0.859 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.898 7.675 15.056 20.667 hybrid contribution 0.361 -0.152 -1.068 1.138 sum -11.536 7.522 13.988 19.630 Atomic orbital electron populations 1.21724 0.96270 0.99965 1.00627 1.21748 0.94472 0.98366 1.00892 1.18672 0.94202 0.89485 0.80345 0.96116 1.21477 0.91098 1.44436 1.02355 0.91201 1.25663 1.02951 0.94579 0.94469 1.70088 1.37715 1.44258 1.02709 0.85475 0.79438 0.79002 0.77169 1.19597 1.21180 1.19137 1.46213 1.14043 1.52802 1.18502 1.19590 0.83940 0.80979 0.87255 1.90761 1.51574 1.59794 1.39918 1.20563 0.82028 0.79664 0.88984 1.90697 1.50371 1.57297 1.39415 1.42289 1.16274 1.51206 1.13874 1.23542 0.99730 1.07321 0.94132 1.84964 1.15797 1.50296 1.00888 1.29090 0.93129 1.03665 1.05795 1.66118 1.29224 1.20266 1.02389 1.19455 0.93933 1.01336 0.93617 1.20543 0.87044 1.09764 0.96023 1.22960 0.98384 0.93256 1.03976 1.23025 0.96602 0.96377 1.03373 0.93874 0.94445 0.92971 0.92223 0.93296 0.92386 0.75413 0.72301 0.74908 0.85875 0.88492 0.86818 0.86623 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 8.51 71.98 0.61 -4.58 16 2 C -0.12 -5.26 5.50 30.59 0.17 -5.09 16 3 C 0.28 13.29 2.11 44.25 0.09 13.39 16 4 H 0.02 1.18 7.52 -2.39 -0.02 1.16 16 5 C -0.56 -28.43 8.66 25.60 0.22 -28.21 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.29 5.16 84.66 0.44 1.73 16 8 N -0.91 -50.27 12.16 21.45 0.26 -50.01 16 9 Si 0.96 41.03 29.55 68.60 2.03 43.05 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 13 N -0.67 -26.88 5.01 -447.62 -2.24 -29.12 16 14 C 0.50 18.78 6.45 87.21 0.56 19.35 16 15 O -0.54 -22.13 13.61 -3.32 -0.05 -22.18 16 16 C 0.51 16.01 7.85 87.21 0.68 16.70 16 17 O -0.50 -16.50 14.10 -3.48 -0.05 -16.55 16 18 N -0.59 -15.76 5.39 -307.36 -1.66 -17.41 16 19 C -0.03 -0.76 7.17 82.63 0.59 -0.16 16 20 S 0.23 5.08 20.45 -56.49 -1.16 3.92 16 21 C -0.02 -0.35 12.22 130.66 1.60 1.25 16 22 N -0.47 -10.49 9.83 -190.99 -1.88 -12.37 16 23 C 0.05 1.24 6.40 41.71 0.27 1.50 16 24 C -0.11 -2.21 5.81 -11.54 -0.07 -2.28 16 25 C -0.15 -2.45 10.09 30.59 0.31 -2.14 16 26 C -0.16 -2.60 10.23 30.59 0.31 -2.28 16 27 H 0.04 1.66 5.65 -2.39 -0.01 1.65 16 28 H 0.04 1.61 7.84 -2.39 -0.02 1.60 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 3.02 6.80 -2.39 -0.02 3.00 16 31 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.41 15.25 7.99 -92.71 -0.74 14.51 16 34 H 0.44 10.51 7.18 -92.71 -0.67 9.84 16 35 H 0.23 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.12 2.18 7.40 -2.38 -0.02 2.17 16 37 H 0.10 1.78 7.74 -2.39 -0.02 1.77 16 38 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -61.48 350.51 0.75 -60.73 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.30 Total: 30.77 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.79 Total: 9.16 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -5.52 Total: -108.92 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.09 Total: -38.72 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -1.16 Total: 3.92 kcal Total: -61.48 0.75 -60.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439552073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.163 kcal (2) G-P(sol) polarization free energy of solvation -61.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds