Wall clock time and date at job start Tue Mar 31 2020 14:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86810 * 119.99741 * 333.95342 * 7 5 3 10 10 H 1.48494 * 109.47126 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46894 * 300.00036 * 9 7 5 12 12 H 1.48501 * 109.46896 * 59.99752 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21373 * 119.99807 * 0.02562 * 14 13 3 16 16 C 1.49261 * 120.00082 * 179.97438 * 14 13 3 17 17 O 1.21414 * 120.00093 * 0.02562 * 16 14 13 18 18 N 1.34781 * 120.00082 * 180.02562 * 16 14 13 19 19 C 1.39418 * 120.00137 * 179.97438 * 18 16 14 20 20 S 1.76200 * 126.07563 * 0.03055 * 19 18 16 21 21 C 1.70955 * 90.33131 * 179.97438 * 20 19 18 22 22 N 1.28971 * 110.32870 * 359.97438 * 21 20 19 23 23 C 1.31793 * 117.20584 * 359.71242 * 22 21 20 24 24 C 1.50701 * 122.85573 * 180.33337 * 23 22 21 25 25 C 1.52998 * 117.50116 * 8.82505 * 24 23 22 26 26 C 1.53004 * 60.00248 * 252.50887 * 25 24 23 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 30 30 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 31 31 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 32 32 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 33 33 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 34 34 H 0.96998 * 119.99707 * 0.02562 * 18 16 14 35 35 H 1.07992 * 124.84094 * 180.02562 * 21 20 19 36 36 H 1.09001 * 115.54903 * 154.53430 * 24 23 22 37 37 H 1.09002 * 117.49716 * 359.97438 * 25 24 23 38 38 H 1.09002 * 117.49761 * 145.02142 * 25 24 23 39 39 H 1.08994 * 117.50203 * 252.51153 * 26 25 24 40 40 H 1.09005 * 117.51909 * 107.47641 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0191 0.5166 4.0088 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3347 2.6307 -0.4664 16 6 0.0717 3.3211 -2.6735 17 8 0.8581 3.3494 -3.5981 18 7 -1.1440 3.8878 -2.8052 19 6 -1.4983 4.5071 -4.0030 20 16 -0.4880 4.6410 -5.4403 21 6 -1.7343 5.4859 -6.2498 22 7 -2.7598 5.6184 -5.4789 23 6 -2.6750 5.1021 -4.2693 24 6 -3.7987 5.1766 -3.2679 25 6 -5.1498 5.6996 -3.7597 26 6 -4.2797 6.5671 -2.8479 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8117 0.4042 0.4383 33 1 2.2954 2.1150 -1.9977 34 1 -1.7721 3.8655 -2.0664 35 1 -1.6723 5.8553 -7.2627 36 1 -3.8075 4.3914 -2.5120 37 1 -5.2258 5.9902 -4.8076 38 1 -6.0478 5.2584 -3.3274 39 1 -4.6052 6.6965 -1.8158 40 1 -3.7830 7.4279 -3.2956 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439552074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:54 Heat of formation + Delta-G solvation = 0.575634 kcal Electronic energy + Delta-G solvation = -24685.498666 eV Core-core repulsion = 21014.215811 eV Total energy + Delta-G solvation = -3671.282856 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.00357 -40.08664 -38.61117 -36.65987 -35.89636 -35.08917 -32.60134 -31.59184 -29.73863 -27.63776 -25.95604 -24.21039 -23.27275 -22.52778 -22.48080 -21.01949 -19.94650 -19.77322 -18.79158 -18.01249 -17.51161 -16.70439 -16.44488 -16.17413 -15.48964 -15.30354 -14.83730 -14.54903 -14.30815 -14.06250 -13.83715 -13.51227 -12.79155 -12.61279 -12.56304 -12.46564 -11.89387 -11.81285 -11.70468 -11.56502 -11.49915 -10.97417 -10.97283 -10.84786 -10.59133 -10.56300 -9.99812 -9.95165 -9.75605 -9.43616 -9.32358 -9.14697 -8.45197 -8.36797 -8.25302 -6.72605 -4.32589 0.41995 0.92672 1.52208 1.61782 2.34869 2.51490 3.31658 3.34550 3.38003 3.52909 3.72064 3.80830 4.05406 4.34560 4.44677 4.63675 4.75503 4.82271 4.96909 5.00787 5.17231 5.45542 5.56086 5.59543 5.85742 5.90250 5.93858 5.98624 6.02200 6.08931 6.47266 6.57249 6.66326 6.69458 6.82373 7.02761 7.19063 7.37154 7.48472 7.57092 8.07402 8.16249 8.34635 8.68080 9.32730 10.66068 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.003114 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.654877 B = 8990.535003 C = 9756.880792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.249 3.751 4 H 0.047 0.953 5 C -0.635 4.635 6 H 0.066 0.934 7 C 0.051 3.949 8 N -0.880 5.880 9 Si 1.028 2.972 10 H -0.281 1.281 11 H -0.279 1.279 12 H -0.273 1.273 13 N -0.656 5.656 14 C 0.501 3.499 15 O -0.527 6.527 16 C 0.498 3.502 17 O -0.490 6.490 18 N -0.602 5.602 19 C 0.003 3.997 20 S 0.240 5.760 21 C -0.044 4.044 22 N -0.445 5.445 23 C 0.045 3.955 24 C -0.092 4.092 25 C -0.156 4.156 26 C -0.163 4.163 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.273 0.727 33 H 0.407 0.593 34 H 0.431 0.569 35 H 0.198 0.802 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 8.261 -11.540 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.147 3.853 4 H 0.064 0.936 5 C -0.672 4.672 6 H 0.084 0.916 7 C -0.158 4.158 8 N -0.511 5.511 9 Si 0.855 3.145 10 H -0.206 1.206 11 H -0.205 1.205 12 H -0.198 1.198 13 N -0.305 5.305 14 C 0.279 3.721 15 O -0.405 6.405 16 C 0.280 3.720 17 O -0.364 6.364 18 N -0.249 5.249 19 C -0.215 4.215 20 S 0.491 5.509 21 C -0.342 4.342 22 N -0.158 5.158 23 C -0.091 4.091 24 C -0.113 4.113 25 C -0.194 4.194 26 C -0.201 4.201 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.242 0.758 34 H 0.271 0.729 35 H 0.215 0.785 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.534 7.865 -10.361 20.261 hybrid contribution -0.743 0.371 -1.200 1.459 sum -16.277 8.236 -11.561 21.597 Atomic orbital electron populations 1.21917 0.97381 0.99353 1.01705 1.22268 0.93690 0.99252 1.02028 1.19273 0.96463 0.88721 0.80859 0.93580 1.21946 0.89188 1.50767 1.05274 0.91570 1.25617 0.96612 0.91544 1.02010 1.70865 1.13748 1.35745 1.30754 0.84244 0.76105 0.77706 0.76469 1.20638 1.20545 1.19830 1.46248 1.13038 1.52234 1.18991 1.19317 0.84664 0.81528 0.86554 1.90761 1.50430 1.59389 1.39937 1.21212 0.81367 0.79202 0.90224 1.90706 1.49073 1.56113 1.40524 1.42530 1.16905 1.52319 1.13154 1.23433 0.98569 1.05761 0.93775 1.84970 1.14734 1.50436 1.00751 1.28449 0.94627 1.06066 1.05052 1.66021 1.28176 1.19068 1.02538 1.19124 0.93682 1.03162 0.93174 1.20354 0.93125 0.99017 0.98792 1.22922 0.92636 1.02855 1.00959 1.22992 1.03394 0.93379 1.00343 0.94616 0.92738 0.93725 0.92736 0.91242 0.91641 0.75768 0.72875 0.78530 0.86625 0.87621 0.88581 0.88260 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.53 37.16 0.32 -2.40 16 2 C -0.13 -2.81 5.37 -26.73 -0.14 -2.95 16 3 C 0.25 5.61 1.84 -69.09 -0.13 5.48 16 4 H 0.05 1.10 6.12 -51.93 -0.32 0.79 16 5 C -0.63 -16.43 8.92 -34.44 -0.31 -16.74 16 6 H 0.07 1.81 7.96 -52.48 -0.42 1.40 16 7 C 0.05 1.38 5.15 -17.82 -0.09 1.29 16 8 N -0.88 -25.16 13.70 55.43 0.76 -24.40 16 9 Si 1.03 23.72 26.56 -169.99 -4.51 19.20 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -5.88 6.34 56.52 0.36 -5.52 16 13 N -0.66 -12.83 5.02 -55.43 -0.28 -13.11 16 14 C 0.50 8.93 6.48 -11.67 -0.08 8.86 16 15 O -0.53 -9.97 13.62 5.48 0.07 -9.89 16 16 C 0.50 7.73 7.85 -11.67 -0.09 7.64 16 17 O -0.49 -8.08 14.09 5.44 0.08 -8.00 16 18 N -0.60 -7.91 5.39 -11.10 -0.06 -7.97 16 19 C 0.00 0.04 7.17 -15.41 -0.11 -0.07 16 20 S 0.24 2.79 20.45 -107.50 -2.20 0.59 16 21 C -0.04 -0.45 12.21 51.56 0.63 0.18 16 22 N -0.44 -5.32 9.83 -11.72 -0.12 -5.43 16 23 C 0.04 0.54 6.40 -83.92 -0.54 0.00 16 24 C -0.09 -0.93 5.81 -91.77 -0.53 -1.46 16 25 C -0.16 -1.38 10.09 -26.73 -0.27 -1.65 16 26 C -0.16 -1.45 10.24 -26.73 -0.27 -1.73 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 1.04 7.89 -51.93 -0.41 0.63 16 29 H 0.04 0.81 5.63 -51.93 -0.29 0.52 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.53 5.77 -51.93 -0.30 1.23 16 32 H 0.27 7.74 8.73 -40.82 -0.36 7.38 16 33 H 0.41 7.62 7.99 -40.82 -0.33 7.30 16 34 H 0.43 5.00 7.18 -40.82 -0.29 4.71 16 35 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.03 7.40 -51.93 -0.38 0.65 16 37 H 0.11 1.03 7.74 -51.93 -0.40 0.63 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -29.30 346.45 -7.52 -36.83 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -4.87 Total: 10.52 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.61 Total: -3.55 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.31 Total: -50.91 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.15 Total: -17.90 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.51 Total: 19.20 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.20 Total: 0.59 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.30 -7.52 -36.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439552074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.401 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds