Wall clock time and date at job start Tue Mar 31 2020 14:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86810 * 119.99741 * 333.95342 * 7 5 3 10 10 H 1.48494 * 109.47126 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46894 * 300.00036 * 9 7 5 12 12 H 1.48501 * 109.46896 * 59.99752 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21373 * 119.99807 * 0.02562 * 14 13 3 16 16 C 1.49261 * 120.00082 * 179.97438 * 14 13 3 17 17 O 1.21414 * 120.00093 * 0.02562 * 16 14 13 18 18 N 1.34781 * 120.00082 * 180.02562 * 16 14 13 19 19 C 1.39418 * 120.00137 * 179.97438 * 18 16 14 20 20 S 1.76200 * 126.07563 * 0.03055 * 19 18 16 21 21 C 1.70955 * 90.33131 * 179.97438 * 20 19 18 22 22 N 1.28971 * 110.32870 * 359.97438 * 21 20 19 23 23 C 1.31793 * 117.20584 * 359.71242 * 22 21 20 24 24 C 1.50701 * 122.85573 * 180.33337 * 23 22 21 25 25 C 1.52998 * 117.50116 * 8.82505 * 24 23 22 26 26 C 1.53004 * 60.00248 * 252.50887 * 25 24 23 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 30 30 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 31 31 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 32 32 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 33 33 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 34 34 H 0.96998 * 119.99707 * 0.02562 * 18 16 14 35 35 H 1.07992 * 124.84094 * 180.02562 * 21 20 19 36 36 H 1.09001 * 115.54903 * 154.53430 * 24 23 22 37 37 H 1.09002 * 117.49716 * 359.97438 * 25 24 23 38 38 H 1.09002 * 117.49761 * 145.02142 * 25 24 23 39 39 H 1.08994 * 117.50203 * 252.51153 * 26 25 24 40 40 H 1.09005 * 117.51909 * 107.47641 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0191 0.5166 4.0088 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3347 2.6307 -0.4664 16 6 0.0717 3.3211 -2.6735 17 8 0.8581 3.3494 -3.5981 18 7 -1.1440 3.8878 -2.8052 19 6 -1.4983 4.5071 -4.0030 20 16 -0.4880 4.6410 -5.4403 21 6 -1.7343 5.4859 -6.2498 22 7 -2.7598 5.6184 -5.4789 23 6 -2.6750 5.1021 -4.2693 24 6 -3.7987 5.1766 -3.2679 25 6 -5.1498 5.6996 -3.7597 26 6 -4.2797 6.5671 -2.8479 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8117 0.4042 0.4383 33 1 2.2954 2.1150 -1.9977 34 1 -1.7721 3.8655 -2.0664 35 1 -1.6723 5.8553 -7.2627 36 1 -3.8075 4.3914 -2.5120 37 1 -5.2258 5.9902 -4.8076 38 1 -6.0478 5.2584 -3.3274 39 1 -4.6052 6.6965 -1.8158 40 1 -3.7830 7.4279 -3.2956 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439552074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:53 Heat of formation + Delta-G solvation = -19.817221 kcal Electronic energy + Delta-G solvation = -24686.382967 eV Core-core repulsion = 21014.215811 eV Total energy + Delta-G solvation = -3672.167156 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.20621 -41.10318 -39.97669 -37.41999 -37.39632 -36.35399 -34.52876 -33.20871 -30.71179 -29.37312 -27.05464 -25.46108 -24.22116 -24.07936 -23.20369 -22.39290 -21.43947 -20.97652 -20.21301 -19.22666 -18.88653 -17.88234 -17.65482 -17.45407 -16.91509 -16.32552 -15.92365 -15.70867 -15.37954 -15.23175 -15.08631 -14.92331 -14.56233 -14.48203 -14.06988 -13.61741 -13.39316 -13.03354 -12.64590 -12.61432 -12.54443 -12.42623 -12.35714 -12.29483 -11.78643 -11.72447 -11.60671 -11.31484 -11.27220 -10.95972 -10.52892 -10.43579 -10.09211 -10.04216 -9.19054 -8.85191 -6.44694 -0.56447 0.03558 0.31425 0.68164 1.17950 1.48658 1.51898 1.61035 1.72021 2.01776 2.43625 2.52457 2.91663 2.99103 3.27055 3.30650 3.66120 3.91349 4.11940 4.24536 4.27477 4.35909 4.39290 4.47086 4.59031 4.77098 4.80200 4.90051 5.06034 5.10274 5.10933 5.18884 5.20367 5.31835 5.34568 5.49595 5.55803 5.64542 5.99147 6.22348 6.47498 6.52211 6.68158 6.89719 7.27506 8.52640 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.003114 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.654877 B = 8990.535003 C = 9756.880792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.255 3.745 4 H 0.038 0.962 5 C -0.634 4.634 6 H 0.039 0.961 7 C 0.008 3.992 8 N -0.913 5.913 9 Si 1.063 2.937 10 H -0.283 1.283 11 H -0.270 1.270 12 H -0.247 1.247 13 N -0.665 5.665 14 C 0.507 3.493 15 O -0.534 6.534 16 C 0.505 3.495 17 O -0.505 6.505 18 N -0.587 5.587 19 C -0.030 4.030 20 S 0.224 5.776 21 C -0.018 4.018 22 N -0.467 5.467 23 C 0.054 3.946 24 C -0.112 4.112 25 C -0.148 4.148 26 C -0.157 4.157 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.262 0.738 33 H 0.409 0.591 34 H 0.437 0.563 35 H 0.234 0.766 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.124 8.901 -11.904 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C 0.151 3.849 4 H 0.056 0.944 5 C -0.671 4.671 6 H 0.057 0.943 7 C -0.195 4.195 8 N -0.545 5.545 9 Si 0.884 3.116 10 H -0.208 1.208 11 H -0.195 1.195 12 H -0.171 1.171 13 N -0.314 5.314 14 C 0.286 3.714 15 O -0.413 6.413 16 C 0.286 3.714 17 O -0.380 6.380 18 N -0.234 5.234 19 C -0.247 4.247 20 S 0.476 5.524 21 C -0.316 4.316 22 N -0.180 5.180 23 C -0.082 4.082 24 C -0.133 4.133 25 C -0.185 4.185 26 C -0.195 4.195 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.245 0.755 34 H 0.279 0.721 35 H 0.250 0.750 36 H 0.144 0.856 37 H 0.114 0.886 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.354 8.526 -10.754 22.917 hybrid contribution 0.055 0.294 -1.269 1.304 sum -18.299 8.820 -12.023 23.605 Atomic orbital electron populations 1.21815 0.95112 1.00928 1.01578 1.22164 0.95646 0.97739 1.01483 1.18994 0.94014 0.89941 0.81951 0.94406 1.22109 0.91189 1.49558 1.04283 0.94280 1.26784 0.96670 0.90921 1.05114 1.70967 1.15056 1.38418 1.30085 0.83802 0.76069 0.78652 0.73091 1.20817 1.19498 1.17090 1.46048 1.14105 1.53111 1.18181 1.19547 0.83743 0.80772 0.87343 1.90747 1.50498 1.59439 1.40620 1.20546 0.82172 0.79681 0.89007 1.90714 1.49736 1.57022 1.40543 1.42253 1.15967 1.51537 1.13679 1.23515 0.99441 1.07884 0.93910 1.85033 1.15592 1.50908 1.00903 1.29082 0.93057 1.03549 1.05875 1.66127 1.28854 1.20165 1.02837 1.19483 0.93746 1.01505 0.93436 1.20557 0.93345 1.00219 0.99136 1.22964 0.92706 1.02318 1.00562 1.23030 1.02889 0.92279 1.01290 0.92221 0.93077 0.93568 0.92899 0.92245 0.92919 0.75531 0.72121 0.74965 0.85584 0.88596 0.86690 0.86530 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 8.53 71.98 0.61 -4.17 16 2 C -0.13 -5.38 5.37 30.60 0.16 -5.22 16 3 C 0.25 11.37 1.84 44.25 0.08 11.45 16 4 H 0.04 1.78 6.12 -2.39 -0.01 1.76 16 5 C -0.63 -33.44 8.92 25.60 0.23 -33.21 16 6 H 0.04 2.22 7.96 -2.91 -0.02 2.20 16 7 C 0.01 0.46 5.15 84.66 0.44 0.89 16 8 N -0.91 -53.47 13.70 21.45 0.29 -53.18 16 9 Si 1.06 47.39 26.56 68.60 1.82 49.21 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.25 -9.93 6.34 99.48 0.63 -9.30 16 13 N -0.67 -25.93 5.02 -447.63 -2.25 -28.18 16 14 C 0.51 17.64 6.48 87.21 0.57 18.20 16 15 O -0.53 -19.46 13.62 -3.32 -0.05 -19.50 16 16 C 0.50 15.29 7.85 87.21 0.68 15.98 16 17 O -0.50 -16.46 14.09 -3.45 -0.05 -16.50 16 18 N -0.59 -14.74 5.39 -307.35 -1.66 -16.40 16 19 C -0.03 -0.73 7.17 82.63 0.59 -0.14 16 20 S 0.22 4.92 20.45 -56.49 -1.16 3.76 16 21 C -0.02 -0.32 12.21 130.66 1.60 1.27 16 22 N -0.47 -10.20 9.83 -190.99 -1.88 -12.07 16 23 C 0.05 1.22 6.40 41.71 0.27 1.49 16 24 C -0.11 -2.03 5.81 -11.54 -0.07 -2.10 16 25 C -0.15 -2.28 10.09 30.59 0.31 -1.97 16 26 C -0.16 -2.46 10.24 30.60 0.31 -2.14 16 27 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.05 1.81 7.89 -2.39 -0.02 1.79 16 29 H 0.05 1.58 5.63 -2.39 -0.01 1.57 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.06 2.54 5.77 -2.39 -0.01 2.52 16 32 H 0.26 15.42 8.73 -92.70 -0.81 14.61 16 33 H 0.41 15.56 7.99 -92.71 -0.74 14.82 16 34 H 0.44 9.52 7.18 -92.71 -0.67 8.85 16 35 H 0.23 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.13 1.98 7.40 -2.39 -0.02 1.96 16 37 H 0.10 1.68 7.74 -2.39 -0.02 1.66 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -63.00 346.45 0.46 -62.55 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.41 Total: 29.99 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 5.78 Total: 0.33 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -5.49 Total: -109.83 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.09 Total: -36.01 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.82 Total: 49.21 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.16 Total: 3.76 kcal Total: -63.00 0.46 -62.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439552074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.730 kcal (2) G-P(sol) polarization free energy of solvation -63.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds