Wall clock time and date at job start Tue Mar 31 2020 14:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47174 * 2 1 4 4 C 1.52996 * 109.47170 * 239.99492 * 2 1 3 5 5 C 1.50699 * 109.47212 * 60.00282 * 4 2 1 6 6 O 1.21283 * 119.99838 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00165 * 179.97438 * 5 4 2 8 8 C 1.39271 * 119.99853 * 185.56385 * 7 5 4 9 9 C 1.39461 * 119.83906 * 24.91694 * 8 7 5 10 10 C 1.36380 * 120.17844 * 179.71379 * 9 8 7 11 11 C 1.40888 * 119.84680 * 0.55227 * 10 9 8 12 12 C 1.41145 * 120.15422 * 179.74215 * 11 10 9 13 13 H 1.08001 * 120.00249 * 34.90481 * 12 11 10 14 14 C 1.39908 * 119.99693 * 214.90478 * 12 11 10 15 15 N 1.30869 * 120.00377 * 355.19227 * 14 12 11 16 16 Si 1.86807 * 119.99905 * 175.19573 * 14 12 11 17 17 H 1.48494 * 109.47261 * 59.99622 * 16 14 12 18 18 H 1.48492 * 109.47083 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46848 * 299.99892 * 16 14 12 20 20 C 1.40836 * 119.68444 * 359.72003 * 11 10 9 21 21 C 1.36477 * 119.81991 * 359.97438 * 20 11 10 22 22 Cl 1.73603 * 119.92621 * 179.97438 * 21 20 11 23 23 C 1.53003 * 109.47126 * 119.99306 * 2 1 3 24 24 C 1.53004 * 117.49529 * 13.75136 * 23 2 1 25 25 C 1.53000 * 117.50011 * 305.09074 * 23 2 1 26 26 H 1.08999 * 109.46931 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47318 * 300.00245 * 1 2 3 28 28 H 1.09003 * 109.47189 * 60.00278 * 1 2 3 29 29 H 0.96696 * 114.00076 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47315 * 299.99913 * 4 2 1 31 31 H 1.09002 * 109.47179 * 180.02562 * 4 2 1 32 32 H 0.96999 * 120.00090 * 5.29098 * 7 5 4 33 33 H 1.08006 * 119.90957 * 359.97438 * 9 8 7 34 34 H 1.08003 * 120.07364 * 180.26981 * 10 9 8 35 35 H 0.96991 * 120.00633 * 180.02562 * 15 14 12 36 36 H 1.08005 * 120.08976 * 180.02562 * 20 11 10 37 37 H 1.09003 * 115.55022 * 159.41627 * 23 2 1 38 38 H 1.08999 * 117.50454 * 359.97438 * 24 23 2 39 39 H 1.09003 * 117.49766 * 145.01966 * 24 23 2 40 40 H 1.08994 * 117.50161 * 214.97457 * 25 23 2 41 41 H 1.08994 * 117.49959 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 8 0.8401 0.9748 -2.3685 7 7 1.8638 -0.4713 -3.7037 8 6 1.4980 0.2486 -4.8385 9 6 1.2830 1.6236 -4.7486 10 6 0.9303 2.3362 -5.8566 11 6 0.7717 1.6783 -7.0923 12 6 0.4016 2.4086 -8.2420 13 1 0.7592 3.4185 -8.3787 14 6 -0.4287 1.8242 -9.2046 15 7 -0.7855 0.5706 -9.0870 16 14 -1.0278 2.8334 -10.6580 17 1 0.1388 3.3194 -11.4377 18 1 -1.8861 1.9887 -11.5269 19 1 -1.8119 3.9942 -10.1650 20 6 0.9849 0.2886 -7.1750 21 6 1.3436 -0.4105 -6.0591 22 17 1.6063 -2.1237 -6.1577 23 6 2.0400 -0.7211 1.2493 24 6 1.0326 -1.5531 2.0455 25 6 1.5399 -0.2223 2.6066 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.9703 1.4236 0.0004 30 1 1.6767 -1.7490 -1.2491 31 1 3.1300 -0.7217 -1.2489 32 1 2.3566 -1.3018 -3.7942 33 1 1.4002 2.1261 -3.7998 34 1 0.7684 3.4017 -5.7860 35 1 -1.3608 0.1654 -9.7545 36 1 0.8656 -0.2223 -8.1190 37 1 3.0647 -1.0887 1.1946 38 1 0.0064 -1.5865 1.6795 39 1 1.3946 -2.4679 2.5149 40 1 2.2354 -0.2621 3.4448 41 1 0.8473 0.6192 2.6094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452646842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:52 Heat of formation + Delta-G solvation = -45.934908 kcal Electronic energy + Delta-G solvation = -24769.726368 eV Core-core repulsion = 21062.090207 eV Total energy + Delta-G solvation = -3707.636162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28068 -38.86466 -37.35822 -35.53825 -35.49614 -34.40522 -33.03840 -31.67785 -29.47675 -29.21438 -27.78776 -25.20172 -23.89338 -22.57847 -21.87536 -20.91249 -19.71925 -19.59390 -17.65248 -17.25178 -16.71441 -16.16154 -15.70649 -15.46093 -15.31603 -14.56826 -14.27027 -13.94202 -13.60886 -13.33877 -13.08896 -12.87808 -12.54011 -12.47974 -12.40857 -11.79114 -11.76833 -11.61229 -11.41170 -11.28858 -11.11103 -10.95835 -10.90441 -10.69672 -10.56286 -10.35891 -10.33549 -10.01702 -9.90050 -9.78020 -9.53436 -9.09563 -8.79548 -7.54722 -6.94106 -6.70315 -4.44439 2.36457 2.84076 3.01561 3.06309 3.08685 3.14102 3.31861 3.44196 3.67719 3.92325 4.38249 4.41237 4.58059 4.59589 4.77981 4.82679 4.95381 5.14378 5.28436 5.40333 5.45146 5.49503 5.61917 5.71266 5.81935 5.90398 5.98590 6.07976 6.22073 6.47341 6.56537 6.69884 6.88655 7.03038 7.15967 7.33386 7.58148 7.68402 7.75050 7.89107 8.10675 8.17026 8.44191 8.70346 8.80240 8.83952 10.20026 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.002962 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.261068 B = 9452.031763 C =10191.124674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.183 3.817 3 O -0.536 6.536 4 C -0.166 4.166 5 C 0.500 3.500 6 O -0.506 6.506 7 N -0.653 5.653 8 C 0.020 3.980 9 C -0.086 4.086 10 C -0.198 4.198 11 C 0.104 3.896 12 C -0.457 4.457 13 H 0.080 0.920 14 C 0.069 3.931 15 N -0.806 5.806 16 Si 0.918 3.082 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.134 4.134 21 C -0.029 4.029 22 Cl -0.121 7.121 23 C -0.188 4.188 24 C -0.179 4.179 25 C -0.165 4.165 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.367 0.633 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.397 0.603 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.281 0.719 36 H 0.144 0.856 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 -5.830 14.744 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.142 3.858 3 O -0.340 6.340 4 C -0.206 4.206 5 C 0.287 3.713 6 O -0.382 6.382 7 N -0.297 5.297 8 C -0.074 4.074 9 C -0.106 4.106 10 C -0.218 4.218 11 C 0.101 3.899 12 C -0.487 4.487 13 H 0.098 0.902 14 C -0.147 4.147 15 N -0.433 5.433 16 Si 0.743 3.257 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.154 4.154 21 C -0.057 4.057 22 Cl -0.093 7.093 23 C -0.207 4.207 24 C -0.216 4.216 25 C -0.202 4.202 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.213 0.787 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.231 0.769 33 H 0.145 0.855 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.161 0.839 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.457 -5.328 14.720 16.277 hybrid contribution 0.616 -0.628 -0.724 1.139 sum 5.073 -5.956 13.996 16.034 Atomic orbital electron populations 1.22119 0.92383 1.01884 1.04918 1.20240 0.95142 0.81557 0.88862 1.86730 1.25572 1.24957 1.96711 1.22395 1.02478 1.01569 0.94189 1.20309 0.81263 0.85725 0.84048 1.90636 1.35971 1.25762 1.85812 1.43081 1.56062 1.25709 1.04824 1.16980 1.14833 0.91038 0.84500 1.20558 0.99991 0.90951 0.99080 1.20930 1.09465 0.99087 0.92319 1.17595 0.88886 0.91150 0.92252 1.19455 1.26051 1.00597 1.02596 0.90205 1.25919 0.95199 0.95023 0.98546 1.69720 1.28161 1.11862 1.33522 0.86199 0.79307 0.80123 0.80083 1.18962 1.20353 1.18983 1.21196 1.02110 0.95157 0.96941 1.20363 1.08554 0.81396 0.95359 1.98246 1.95719 1.16824 1.98523 1.23070 0.99349 1.04738 0.93542 1.23138 0.99751 0.95000 1.03665 1.22872 1.03731 0.97993 0.95633 0.91818 0.92392 0.88494 0.78716 0.88397 0.89044 0.76853 0.85503 0.87914 0.90767 0.83853 0.87850 0.87849 0.88961 0.89030 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 7.18 37.16 0.27 -1.76 16 2 C 0.18 2.11 0.80 -90.62 -0.07 2.04 16 3 O -0.54 -7.08 11.85 -53.48 -0.63 -7.71 16 4 C -0.17 -1.87 4.95 -27.89 -0.14 -2.01 16 5 C 0.50 8.21 7.18 -10.99 -0.08 8.13 16 6 O -0.51 -10.15 10.09 -12.70 -0.13 -10.27 16 7 N -0.65 -11.37 5.16 -9.71 -0.05 -11.42 16 8 C 0.02 0.44 6.44 -83.52 -0.54 -0.09 16 9 C -0.09 -1.98 8.64 -39.80 -0.34 -2.32 16 10 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 11 C 0.10 2.71 5.55 -106.81 -0.59 2.11 16 12 C -0.46 -11.78 9.02 -37.85 -0.34 -12.12 16 13 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 14 C 0.07 1.71 5.42 -17.34 -0.09 1.61 16 15 N -0.81 -20.56 10.59 55.55 0.59 -19.97 16 16 Si 0.92 18.58 29.56 -169.99 -5.03 13.55 16 17 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 C -0.13 -3.37 8.38 -39.23 -0.33 -3.70 16 21 C -0.03 -0.65 6.30 -39.72 -0.25 -0.90 16 22 Cl -0.12 -2.31 27.75 -51.86 -1.44 -3.75 16 23 C -0.19 -1.68 5.32 -90.62 -0.48 -2.16 16 24 C -0.18 -1.46 9.66 -26.69 -0.26 -1.72 16 25 C -0.17 -1.42 9.86 -26.69 -0.26 -1.69 16 26 H 0.06 0.71 6.74 -51.93 -0.35 0.36 16 27 H 0.06 0.71 6.96 -51.93 -0.36 0.35 16 28 H 0.10 1.61 5.51 -51.93 -0.29 1.32 16 29 H 0.37 3.50 9.04 45.56 0.41 3.91 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.40 5.89 7.75 -40.82 -0.32 5.57 16 33 H 0.13 2.89 5.76 -52.48 -0.30 2.59 16 34 H 0.10 2.36 8.06 -52.48 -0.42 1.93 16 35 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 36 H 0.14 3.79 6.13 -52.48 -0.32 3.47 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.87 5.89 -51.93 -0.31 0.57 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.95 7.28 -51.93 -0.38 0.58 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -29.19 346.74 -9.65 -38.84 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -4.29 Total: 15.27 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -3.90 Total: -19.77 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.54 Total: -31.39 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.76 Total: -17.99 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -1.44 Total: -3.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.19 -9.65 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452646842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.091 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds