Wall clock time and date at job start Tue Mar 31 2020 14:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47174 * 2 1 4 4 C 1.52996 * 109.47170 * 239.99492 * 2 1 3 5 5 C 1.50699 * 109.47212 * 60.00282 * 4 2 1 6 6 O 1.21283 * 119.99838 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00165 * 179.97438 * 5 4 2 8 8 C 1.39271 * 119.99853 * 185.56385 * 7 5 4 9 9 C 1.39461 * 119.83906 * 24.91694 * 8 7 5 10 10 C 1.36380 * 120.17844 * 179.71379 * 9 8 7 11 11 C 1.40888 * 119.84680 * 0.55227 * 10 9 8 12 12 C 1.41145 * 120.15422 * 179.74215 * 11 10 9 13 13 H 1.08001 * 120.00249 * 34.90481 * 12 11 10 14 14 C 1.39908 * 119.99693 * 214.90478 * 12 11 10 15 15 N 1.30869 * 120.00377 * 355.19227 * 14 12 11 16 16 Si 1.86807 * 119.99905 * 175.19573 * 14 12 11 17 17 H 1.48494 * 109.47261 * 59.99622 * 16 14 12 18 18 H 1.48492 * 109.47083 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46848 * 299.99892 * 16 14 12 20 20 C 1.40836 * 119.68444 * 359.72003 * 11 10 9 21 21 C 1.36477 * 119.81991 * 359.97438 * 20 11 10 22 22 Cl 1.73603 * 119.92621 * 179.97438 * 21 20 11 23 23 C 1.53003 * 109.47126 * 119.99306 * 2 1 3 24 24 C 1.53004 * 117.49529 * 13.75136 * 23 2 1 25 25 C 1.53000 * 117.50011 * 305.09074 * 23 2 1 26 26 H 1.08999 * 109.46931 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47318 * 300.00245 * 1 2 3 28 28 H 1.09003 * 109.47189 * 60.00278 * 1 2 3 29 29 H 0.96696 * 114.00076 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47315 * 299.99913 * 4 2 1 31 31 H 1.09002 * 109.47179 * 180.02562 * 4 2 1 32 32 H 0.96999 * 120.00090 * 5.29098 * 7 5 4 33 33 H 1.08006 * 119.90957 * 359.97438 * 9 8 7 34 34 H 1.08003 * 120.07364 * 180.26981 * 10 9 8 35 35 H 0.96991 * 120.00633 * 180.02562 * 15 14 12 36 36 H 1.08005 * 120.08976 * 180.02562 * 20 11 10 37 37 H 1.09003 * 115.55022 * 159.41627 * 23 2 1 38 38 H 1.08999 * 117.50454 * 359.97438 * 24 23 2 39 39 H 1.09003 * 117.49766 * 145.01966 * 24 23 2 40 40 H 1.08994 * 117.50161 * 214.97457 * 25 23 2 41 41 H 1.08994 * 117.49959 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 8 0.8401 0.9748 -2.3685 7 7 1.8638 -0.4713 -3.7037 8 6 1.4980 0.2486 -4.8385 9 6 1.2830 1.6236 -4.7486 10 6 0.9303 2.3362 -5.8566 11 6 0.7717 1.6783 -7.0923 12 6 0.4016 2.4086 -8.2420 13 1 0.7592 3.4185 -8.3787 14 6 -0.4287 1.8242 -9.2046 15 7 -0.7855 0.5706 -9.0870 16 14 -1.0278 2.8334 -10.6580 17 1 0.1388 3.3194 -11.4377 18 1 -1.8861 1.9887 -11.5269 19 1 -1.8119 3.9942 -10.1650 20 6 0.9849 0.2886 -7.1750 21 6 1.3436 -0.4105 -6.0591 22 17 1.6063 -2.1237 -6.1577 23 6 2.0400 -0.7211 1.2493 24 6 1.0326 -1.5531 2.0455 25 6 1.5399 -0.2223 2.6066 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.9703 1.4236 0.0004 30 1 1.6767 -1.7490 -1.2491 31 1 3.1300 -0.7217 -1.2489 32 1 2.3566 -1.3018 -3.7942 33 1 1.4002 2.1261 -3.7998 34 1 0.7684 3.4017 -5.7860 35 1 -1.3608 0.1654 -9.7545 36 1 0.8656 -0.2223 -8.1190 37 1 3.0647 -1.0887 1.1946 38 1 0.0064 -1.5865 1.6795 39 1 1.3946 -2.4679 2.5149 40 1 2.2354 -0.2621 3.4448 41 1 0.8473 0.6192 2.6094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452646842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:52 Heat of formation + Delta-G solvation = -62.935782 kcal Electronic energy + Delta-G solvation = -24770.463582 eV Core-core repulsion = 21062.090207 eV Total energy + Delta-G solvation = -3708.373375 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55751 -40.05948 -38.89285 -37.24017 -36.41095 -35.98695 -34.76041 -32.71769 -31.30239 -30.90047 -28.98358 -26.83051 -24.93094 -23.60208 -23.20718 -22.63710 -21.10358 -20.53837 -19.42772 -18.59871 -17.99523 -17.33732 -17.17925 -16.64459 -16.52036 -16.02095 -15.67580 -15.11436 -15.05633 -14.82102 -14.44863 -14.26217 -14.14618 -13.89540 -13.47952 -13.30813 -13.20622 -12.83005 -12.80035 -12.67191 -12.61419 -12.26415 -12.04637 -11.95712 -11.79333 -11.67902 -11.58595 -11.36299 -11.26664 -11.05465 -10.87489 -10.77048 -10.27550 -9.38984 -8.73581 -8.53117 -6.37044 0.62261 0.96012 1.38477 1.40624 1.47129 1.52456 1.86518 2.22639 2.28517 2.74533 2.84554 3.52857 3.54894 3.60802 3.69232 4.00747 4.07275 4.19995 4.27310 4.40469 4.40767 4.60757 4.70510 4.79005 4.85184 4.92211 4.96181 5.00781 5.03797 5.06788 5.23951 5.29780 5.31114 5.32224 5.45527 5.52341 5.71909 5.87803 6.05743 6.25351 6.52814 6.69539 6.87693 6.91037 6.99512 7.41348 8.38422 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.002962 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.261068 B = 9452.031763 C =10191.124674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.181 3.819 3 O -0.563 6.563 4 C -0.155 4.155 5 C 0.497 3.503 6 O -0.543 6.543 7 N -0.650 5.650 8 C 0.037 3.963 9 C -0.095 4.095 10 C -0.209 4.209 11 C 0.074 3.926 12 C -0.491 4.491 13 H 0.080 0.920 14 C 0.028 3.972 15 N -0.837 5.837 16 Si 0.989 3.011 17 H -0.257 1.257 18 H -0.270 1.270 19 H -0.264 1.264 20 C -0.150 4.150 21 C -0.037 4.037 22 Cl -0.087 7.087 23 C -0.184 4.184 24 C -0.173 4.173 25 C -0.172 4.172 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.381 0.619 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.412 0.588 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.286 0.714 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.824 -7.516 16.152 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.140 3.860 3 O -0.370 6.370 4 C -0.194 4.194 5 C 0.287 3.713 6 O -0.420 6.420 7 N -0.296 5.296 8 C -0.058 4.058 9 C -0.115 4.115 10 C -0.229 4.229 11 C 0.071 3.929 12 C -0.522 4.522 13 H 0.098 0.902 14 C -0.184 4.184 15 N -0.465 5.465 16 Si 0.810 3.190 17 H -0.182 1.182 18 H -0.194 1.194 19 H -0.189 1.189 20 C -0.171 4.171 21 C -0.066 4.066 22 Cl -0.058 7.058 23 C -0.202 4.202 24 C -0.210 4.210 25 C -0.208 4.208 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.229 0.771 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.249 0.751 33 H 0.147 0.853 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.115 0.885 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.596 -7.046 16.163 18.499 hybrid contribution 0.301 -0.186 -0.971 1.033 sum 5.897 -7.232 15.192 17.829 Atomic orbital electron populations 1.22096 0.94126 1.02368 1.02760 1.20278 0.93984 0.81350 0.90358 1.86700 1.27104 1.26285 1.96874 1.22449 1.04468 1.01856 0.90660 1.21326 0.79999 0.85197 0.84819 1.90644 1.37422 1.27649 1.86329 1.43132 1.56361 1.26053 1.04034 1.17048 1.12190 0.90860 0.85734 1.20656 1.00363 0.91816 0.98635 1.21069 1.09799 0.99487 0.92508 1.17887 0.90024 0.91979 0.93008 1.19697 1.27679 1.00988 1.03787 0.90222 1.26762 0.94743 0.96023 1.00898 1.69797 1.28823 1.13247 1.34612 0.85139 0.78896 0.78412 0.76575 1.18158 1.19427 1.18853 1.21095 1.03549 0.95223 0.97242 1.20387 1.07859 0.83332 0.95001 1.98242 1.95461 1.13621 1.98497 1.22965 1.00516 1.04709 0.91995 1.23212 0.99347 0.95418 1.03047 1.22897 1.03917 0.97861 0.96170 0.90052 0.92591 0.92499 0.77057 0.85781 0.85555 0.75071 0.85317 0.87606 0.90299 0.85472 0.85517 0.88470 0.87090 0.87513 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 7.18 71.98 0.52 -3.42 16 2 C 0.18 3.75 0.80 -10.79 -0.01 3.74 16 3 O -0.56 -14.15 11.85 -131.53 -1.56 -15.71 16 4 C -0.15 -2.94 4.95 29.85 0.15 -2.79 16 5 C 0.50 15.50 7.18 87.66 0.63 16.13 16 6 O -0.54 -21.75 10.09 14.41 0.15 -21.60 16 7 N -0.65 -21.50 5.16 -303.03 -1.56 -23.06 16 8 C 0.04 1.60 6.44 38.58 0.25 1.85 16 9 C -0.09 -4.44 8.64 22.13 0.19 -4.25 16 10 C -0.21 -10.53 9.74 22.49 0.22 -10.31 16 11 C 0.07 3.99 5.55 -21.28 -0.12 3.87 16 12 C -0.49 -26.30 9.02 23.39 0.21 -26.09 16 13 H 0.08 4.08 7.85 -2.91 -0.02 4.05 16 14 C 0.03 1.43 5.42 85.24 0.46 1.90 16 15 N -0.84 -43.83 10.59 21.82 0.23 -43.59 16 16 Si 0.99 38.55 29.56 68.60 2.03 40.57 16 17 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 18 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 20 C -0.15 -7.81 8.38 22.49 0.19 -7.62 16 21 C -0.04 -1.69 6.30 22.18 0.14 -1.55 16 22 Cl -0.09 -3.18 27.75 -2.72 -0.08 -3.26 16 23 C -0.18 -2.62 5.32 -10.79 -0.06 -2.68 16 24 C -0.17 -2.27 9.66 30.62 0.30 -1.97 16 25 C -0.17 -2.54 9.86 30.62 0.30 -2.23 16 26 H 0.08 1.67 6.74 -2.39 -0.02 1.66 16 27 H 0.06 1.37 6.96 -2.39 -0.02 1.36 16 28 H 0.06 1.92 5.51 -2.39 -0.01 1.90 16 29 H 0.38 6.53 9.04 -74.06 -0.67 5.86 16 30 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.41 11.05 7.75 -92.71 -0.72 10.33 16 33 H 0.13 5.98 5.76 -2.91 -0.02 5.97 16 34 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 35 H 0.29 13.70 8.30 -92.71 -0.77 12.94 16 36 H 0.13 6.97 6.13 -2.91 -0.02 6.95 16 37 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.40 5.89 -2.39 -0.01 1.38 16 39 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.49 7.28 -2.39 -0.02 1.48 16 Total: -1.00 -66.19 346.74 2.28 -63.90 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.29 Total: 38.18 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 3.37 Total: -35.43 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: -1.33 Total: -66.66 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.41 Total: -37.31 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.57 kcal Atomic # 17 Polarization: -3.18 SS G_CDS: -0.08 Total: -3.26 kcal Total: -66.19 2.28 -63.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452646842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.969 kcal (2) G-P(sol) polarization free energy of solvation -66.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds