Wall clock time and date at job start Tue Mar 31 2020 14:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42894 * 109.47546 * 2 1 4 4 C 1.52999 * 109.47016 * 120.00282 * 2 1 3 5 5 C 1.50693 * 109.47391 * 178.74804 * 4 2 1 6 6 O 1.21287 * 119.99741 * 353.82510 * 5 4 2 7 7 N 1.34772 * 120.00343 * 174.10146 * 5 4 2 8 8 C 1.39273 * 120.00489 * 185.51372 * 7 5 4 9 9 C 1.39473 * 119.83503 * 30.88507 * 8 7 5 10 10 C 1.36369 * 120.17886 * 179.76474 * 9 8 7 11 11 C 1.40902 * 119.84696 * 0.51234 * 10 9 8 12 12 C 1.41141 * 120.15701 * 179.76259 * 11 10 9 13 13 H 1.08004 * 120.00437 * 145.21033 * 12 11 10 14 14 C 1.39904 * 120.00469 * 325.21401 * 12 11 10 15 15 N 1.30867 * 120.00460 * 170.74112 * 14 12 11 16 16 Si 1.86800 * 119.99571 * 350.74058 * 14 12 11 17 17 H 1.48498 * 109.47525 * 88.26095 * 16 14 12 18 18 H 1.48504 * 109.47219 * 208.25853 * 16 14 12 19 19 H 1.48503 * 109.47378 * 328.25665 * 16 14 12 20 20 C 1.40832 * 119.68264 * 359.74356 * 11 10 9 21 21 C 1.36484 * 119.81916 * 0.02562 * 20 11 10 22 22 Cl 1.73607 * 119.92433 * 179.97438 * 21 20 11 23 23 C 1.53001 * 109.46924 * 239.99660 * 2 1 3 24 24 C 1.53003 * 117.49690 * 128.74718 * 23 2 1 25 25 C 1.53001 * 117.49513 * 60.09015 * 23 2 1 26 26 H 1.09000 * 109.47141 * 294.96811 * 1 2 3 27 27 H 1.09007 * 109.46968 * 54.96363 * 1 2 3 28 28 H 1.08994 * 109.47545 * 174.96808 * 1 2 3 29 29 H 0.96692 * 114.00075 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47592 * 58.74404 * 4 2 1 31 31 H 1.09012 * 109.47031 * 298.74730 * 4 2 1 32 32 H 0.96998 * 120.00197 * 5.51200 * 7 5 4 33 33 H 1.08003 * 119.91029 * 0.02759 * 9 8 7 34 34 H 1.07995 * 120.08180 * 180.23364 * 10 9 8 35 35 H 0.97005 * 120.00359 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.09270 * 180.02562 * 20 11 10 37 37 H 1.08999 * 115.55253 * 274.41978 * 23 2 1 38 38 H 1.09004 * 117.49909 * 0.02562 * 24 23 2 39 39 H 1.08995 * 117.49395 * 145.02039 * 24 23 2 40 40 H 1.09001 * 117.49474 * 214.97546 * 25 23 2 41 41 H 1.08999 * 117.50156 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5466 -0.7483 1.2339 6 8 4.1505 -0.3418 0.2638 7 7 4.2229 -1.2293 2.2958 8 6 5.6129 -1.1492 2.3308 9 6 6.2632 -0.0919 1.6947 10 6 7.6236 -0.0040 1.7286 11 6 8.3736 -0.9905 2.3993 12 6 9.7822 -0.9086 2.4342 13 1 10.3209 -1.2400 3.3097 14 6 10.4808 -0.3981 1.3348 15 7 11.7626 -0.1523 1.4307 16 14 9.5838 -0.0672 -0.2699 17 1 9.0281 1.3098 -0.2517 18 1 10.5324 -0.2031 -1.4044 19 1 8.4778 -1.0452 -0.4297 20 6 7.7109 -2.0582 3.0350 21 6 6.3485 -2.1306 2.9967 22 17 5.5289 -3.4461 3.7788 23 6 2.0400 -0.7213 -1.2492 24 6 3.0763 0.0038 -2.1101 25 6 1.6374 -0.1484 -2.6096 26 1 -0.3633 0.4338 0.9316 27 1 -0.3633 0.5900 -0.8415 28 1 -0.3634 -1.0236 -0.0901 29 1 2.9704 1.4235 -0.0004 30 1 1.6584 -1.7423 1.2606 31 1 1.6951 -0.1946 2.1391 32 1 3.7416 -1.6312 3.0358 33 1 5.6876 0.6614 1.1775 34 1 8.1254 0.8173 1.2387 35 1 12.2471 0.2013 0.6683 36 1 8.2792 -2.8177 3.5513 37 1 2.1253 -1.8047 -1.1647 38 1 3.3951 0.9946 -1.7863 39 1 3.8431 -0.6025 -2.5922 40 1 1.4582 -0.8548 -3.4201 41 1 1.0089 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452646843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:55 Heat of formation + Delta-G solvation = -51.611039 kcal Electronic energy + Delta-G solvation = -25373.659692 eV Core-core repulsion = 21665.777395 eV Total energy + Delta-G solvation = -3707.882297 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51594 -38.87973 -37.48197 -35.88491 -34.95732 -34.54866 -33.26880 -32.25717 -29.99065 -29.89447 -28.16474 -25.04621 -23.37097 -22.21258 -22.02127 -21.41476 -20.09407 -19.64222 -17.76876 -17.49653 -17.05289 -16.49205 -15.82035 -15.51939 -15.21678 -14.46669 -14.36072 -14.13896 -13.99796 -13.09138 -12.95986 -12.94683 -12.78282 -12.63286 -12.57228 -12.45141 -12.24208 -11.97153 -11.64717 -11.24427 -11.13216 -11.07595 -10.92867 -10.72707 -10.49738 -10.40064 -10.30903 -10.03080 -9.91572 -9.83905 -9.55756 -9.23308 -9.04981 -7.90826 -7.31555 -7.03031 -4.61254 2.07202 2.37377 2.78351 2.91696 3.09320 3.17576 3.28359 3.47325 3.89652 3.90693 4.19599 4.33047 4.58977 4.66556 4.79260 5.09936 5.13497 5.16209 5.29180 5.35921 5.42960 5.50684 5.69940 5.71974 5.78661 5.81506 6.04075 6.12973 6.17100 6.24758 6.32901 6.35357 6.45744 6.61692 6.86042 7.07292 7.10933 7.34644 7.64201 7.70937 7.73021 7.87398 8.18091 8.36620 8.53162 8.62757 9.98127 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013482 B = 0.004399 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.360101 B = 6364.112817 C = 7927.112092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.180 3.820 3 O -0.563 6.563 4 C -0.167 4.167 5 C 0.502 3.498 6 O -0.523 6.523 7 N -0.650 5.650 8 C 0.010 3.990 9 C -0.054 4.054 10 C -0.223 4.223 11 C 0.095 3.905 12 C -0.438 4.438 13 H 0.095 0.905 14 C 0.082 3.918 15 N -0.808 5.808 16 Si 0.913 3.087 17 H -0.267 1.267 18 H -0.290 1.290 19 H -0.243 1.243 20 C -0.186 4.186 21 C -0.002 4.002 22 Cl -0.113 7.113 23 C -0.170 4.170 24 C -0.135 4.135 25 C -0.186 4.186 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.386 0.614 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.399 0.601 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.288 0.712 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.056 -1.244 -2.074 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.138 3.862 3 O -0.373 6.373 4 C -0.208 4.208 5 C 0.289 3.711 6 O -0.400 6.400 7 N -0.293 5.293 8 C -0.084 4.084 9 C -0.074 4.074 10 C -0.242 4.242 11 C 0.091 3.909 12 C -0.466 4.466 13 H 0.113 0.887 14 C -0.137 4.137 15 N -0.432 5.432 16 Si 0.739 3.261 17 H -0.193 1.193 18 H -0.218 1.218 19 H -0.166 1.166 20 C -0.207 4.207 21 C -0.031 4.031 22 Cl -0.084 7.084 23 C -0.189 4.189 24 C -0.172 4.172 25 C -0.223 4.223 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.238 0.762 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.234 0.766 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.061 -0.856 -2.762 18.291 hybrid contribution 0.200 -0.504 -0.123 0.556 sum -17.862 -1.360 -2.885 18.144 Atomic orbital electron populations 1.21711 0.92280 1.02315 1.02833 1.20282 0.93690 0.81830 0.90383 1.86404 1.28752 1.25457 1.96721 1.22455 0.93091 1.03770 1.01458 1.20568 0.89621 0.78523 0.82345 1.90680 1.70017 1.47113 1.32209 1.43024 1.05661 1.60011 1.20649 1.16794 0.81358 0.98657 1.11616 1.20324 0.94363 0.95302 0.97425 1.20939 0.93299 1.01035 1.08960 1.17670 0.93880 0.89280 0.90050 1.19447 0.89931 1.34573 1.02645 0.88714 1.26146 0.94950 0.91268 1.01301 1.69638 1.09131 1.31375 1.33012 0.86318 0.79630 0.80771 0.79347 1.19301 1.21789 1.16646 1.20630 0.90583 1.00409 1.09047 1.20311 0.92516 0.88701 1.01539 1.98273 1.80167 1.49535 1.80443 1.22773 1.05503 0.99051 0.91568 1.22665 0.91088 1.02043 1.01421 1.23012 0.99819 1.02915 0.96588 0.92012 0.91496 0.91181 0.76166 0.88169 0.88331 0.76608 0.86145 0.87073 0.90168 0.86521 0.88269 0.88519 0.89414 0.89599 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.61 37.16 0.32 -0.88 16 2 C 0.18 2.01 0.92 -90.62 -0.08 1.93 16 3 O -0.56 -7.47 12.11 -50.39 -0.61 -8.08 16 4 C -0.17 -1.76 4.97 -27.89 -0.14 -1.90 16 5 C 0.50 7.30 7.04 -10.99 -0.08 7.22 16 6 O -0.52 -8.94 8.87 -9.60 -0.09 -9.03 16 7 N -0.65 -10.02 5.08 -9.71 -0.05 -10.07 16 8 C 0.01 0.19 6.34 -83.52 -0.53 -0.34 16 9 C -0.05 -1.14 8.58 -39.80 -0.34 -1.49 16 10 C -0.22 -5.14 7.00 -39.25 -0.27 -5.42 16 11 C 0.10 2.29 5.07 -106.81 -0.54 1.74 16 12 C -0.44 -11.30 9.58 -37.86 -0.36 -11.66 16 13 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 14 C 0.08 2.09 5.48 -17.34 -0.10 2.00 16 15 N -0.81 -20.92 13.93 55.55 0.77 -20.15 16 16 Si 0.91 20.62 24.44 -169.99 -4.15 16.47 16 17 H -0.27 -5.85 6.53 56.52 0.37 -5.48 16 18 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.24 -5.75 6.83 56.52 0.39 -5.36 16 20 C -0.19 -4.11 9.50 -39.23 -0.37 -4.48 16 21 C 0.00 -0.05 6.30 -39.72 -0.25 -0.30 16 22 Cl -0.11 -1.84 27.85 -51.86 -1.44 -3.29 16 23 C -0.17 -2.05 3.93 -90.62 -0.36 -2.40 16 24 C -0.14 -1.80 7.84 -26.69 -0.21 -2.01 16 25 C -0.19 -2.08 9.73 -26.69 -0.26 -2.34 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.62 7.48 -51.93 -0.39 0.23 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.39 5.37 5.50 45.56 0.25 5.62 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 32 H 0.40 5.15 7.92 -40.82 -0.32 4.83 16 33 H 0.12 2.44 6.22 -52.48 -0.33 2.11 16 34 H 0.11 2.58 4.56 -52.49 -0.24 2.34 16 35 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 36 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 37 H 0.10 1.21 8.11 -51.93 -0.42 0.78 16 38 H 0.10 1.36 6.31 -51.93 -0.33 1.03 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.01 7.67 -51.93 -0.40 0.61 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -26.88 340.67 -8.75 -35.63 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -4.74 Total: 13.71 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -3.57 Total: -20.33 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.72 Total: -30.22 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.70 Total: -17.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.15 Total: 16.47 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -1.44 Total: -3.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.88 -8.75 -35.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452646843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.984 kcal (2) G-P(sol) polarization free energy of solvation -26.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds