Wall clock time and date at job start Tue Mar 31 2020 14:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42894 * 109.47546 * 2 1 4 4 C 1.52999 * 109.47016 * 120.00282 * 2 1 3 5 5 C 1.50693 * 109.47391 * 178.74804 * 4 2 1 6 6 O 1.21287 * 119.99741 * 353.82510 * 5 4 2 7 7 N 1.34772 * 120.00343 * 174.10146 * 5 4 2 8 8 C 1.39273 * 120.00489 * 185.51372 * 7 5 4 9 9 C 1.39473 * 119.83503 * 30.88507 * 8 7 5 10 10 C 1.36369 * 120.17886 * 179.76474 * 9 8 7 11 11 C 1.40902 * 119.84696 * 0.51234 * 10 9 8 12 12 C 1.41141 * 120.15701 * 179.76259 * 11 10 9 13 13 H 1.08004 * 120.00437 * 145.21033 * 12 11 10 14 14 C 1.39904 * 120.00469 * 325.21401 * 12 11 10 15 15 N 1.30867 * 120.00460 * 170.74112 * 14 12 11 16 16 Si 1.86800 * 119.99571 * 350.74058 * 14 12 11 17 17 H 1.48498 * 109.47525 * 88.26095 * 16 14 12 18 18 H 1.48504 * 109.47219 * 208.25853 * 16 14 12 19 19 H 1.48503 * 109.47378 * 328.25665 * 16 14 12 20 20 C 1.40832 * 119.68264 * 359.74356 * 11 10 9 21 21 C 1.36484 * 119.81916 * 0.02562 * 20 11 10 22 22 Cl 1.73607 * 119.92433 * 179.97438 * 21 20 11 23 23 C 1.53001 * 109.46924 * 239.99660 * 2 1 3 24 24 C 1.53003 * 117.49690 * 128.74718 * 23 2 1 25 25 C 1.53001 * 117.49513 * 60.09015 * 23 2 1 26 26 H 1.09000 * 109.47141 * 294.96811 * 1 2 3 27 27 H 1.09007 * 109.46968 * 54.96363 * 1 2 3 28 28 H 1.08994 * 109.47545 * 174.96808 * 1 2 3 29 29 H 0.96692 * 114.00075 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47592 * 58.74404 * 4 2 1 31 31 H 1.09012 * 109.47031 * 298.74730 * 4 2 1 32 32 H 0.96998 * 120.00197 * 5.51200 * 7 5 4 33 33 H 1.08003 * 119.91029 * 0.02759 * 9 8 7 34 34 H 1.07995 * 120.08180 * 180.23364 * 10 9 8 35 35 H 0.97005 * 120.00359 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.09270 * 180.02562 * 20 11 10 37 37 H 1.08999 * 115.55253 * 274.41978 * 23 2 1 38 38 H 1.09004 * 117.49909 * 0.02562 * 24 23 2 39 39 H 1.08995 * 117.49395 * 145.02039 * 24 23 2 40 40 H 1.09001 * 117.49474 * 214.97546 * 25 23 2 41 41 H 1.08999 * 117.50156 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5466 -0.7483 1.2339 6 8 4.1505 -0.3418 0.2638 7 7 4.2229 -1.2293 2.2958 8 6 5.6129 -1.1492 2.3308 9 6 6.2632 -0.0919 1.6947 10 6 7.6236 -0.0040 1.7286 11 6 8.3736 -0.9905 2.3993 12 6 9.7822 -0.9086 2.4342 13 1 10.3209 -1.2400 3.3097 14 6 10.4808 -0.3981 1.3348 15 7 11.7626 -0.1523 1.4307 16 14 9.5838 -0.0672 -0.2699 17 1 9.0281 1.3098 -0.2517 18 1 10.5324 -0.2031 -1.4044 19 1 8.4778 -1.0452 -0.4297 20 6 7.7109 -2.0582 3.0350 21 6 6.3485 -2.1306 2.9967 22 17 5.5289 -3.4461 3.7788 23 6 2.0400 -0.7213 -1.2492 24 6 3.0763 0.0038 -2.1101 25 6 1.6374 -0.1484 -2.6096 26 1 -0.3633 0.4338 0.9316 27 1 -0.3633 0.5900 -0.8415 28 1 -0.3634 -1.0236 -0.0901 29 1 2.9704 1.4235 -0.0004 30 1 1.6584 -1.7423 1.2606 31 1 1.6951 -0.1946 2.1391 32 1 3.7416 -1.6312 3.0358 33 1 5.6876 0.6614 1.1775 34 1 8.1254 0.8173 1.2387 35 1 12.2471 0.2013 0.6683 36 1 8.2792 -2.8177 3.5513 37 1 2.1253 -1.8047 -1.1647 38 1 3.3951 0.9946 -1.7863 39 1 3.8431 -0.6025 -2.5922 40 1 1.4582 -0.8548 -3.4201 41 1 1.0089 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452646843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:54 Heat of formation + Delta-G solvation = -67.266636 kcal Electronic energy + Delta-G solvation = -25374.338570 eV Core-core repulsion = 21665.777395 eV Total energy + Delta-G solvation = -3708.561175 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71554 -40.20163 -38.86606 -37.41302 -36.11045 -35.87328 -34.96547 -33.22416 -31.65855 -31.51792 -29.18517 -26.64945 -24.37303 -23.77821 -23.15996 -22.90945 -21.34884 -20.69874 -19.56775 -18.94918 -18.10466 -17.65761 -17.26054 -16.67098 -16.58492 -16.14831 -15.79480 -15.35050 -15.21313 -14.76044 -14.56039 -14.40488 -14.21595 -13.81117 -13.67491 -13.40800 -13.24823 -13.02187 -12.89853 -12.85243 -12.60565 -12.33979 -12.22253 -12.19084 -11.95380 -11.80752 -11.74182 -11.33026 -11.22063 -11.09076 -10.93113 -10.75914 -10.34581 -9.60199 -8.98754 -8.89818 -6.52675 0.41709 0.61528 1.21056 1.23297 1.34460 1.43713 1.71197 2.06641 2.22631 2.53463 2.97069 3.31093 3.32306 3.64634 3.81569 3.82329 4.08234 4.15054 4.22359 4.40653 4.44755 4.54995 4.67132 4.70137 4.72569 4.77709 4.84109 4.92375 4.95082 5.01407 5.13357 5.18967 5.32636 5.32983 5.34353 5.38956 5.41791 5.67845 5.80628 6.01131 6.25934 6.54030 6.58507 6.71554 6.73418 7.29794 8.16708 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013482 B = 0.004399 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.360101 B = 6364.112817 C = 7927.112092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.173 3.827 3 O -0.574 6.574 4 C -0.157 4.157 5 C 0.501 3.499 6 O -0.547 6.547 7 N -0.648 5.648 8 C 0.041 3.959 9 C -0.066 4.066 10 C -0.228 4.228 11 C 0.077 3.923 12 C -0.473 4.473 13 H 0.066 0.934 14 C 0.052 3.948 15 N -0.850 5.850 16 Si 0.960 3.040 17 H -0.258 1.258 18 H -0.279 1.279 19 H -0.260 1.260 20 C -0.190 4.190 21 C -0.012 4.012 22 Cl -0.072 7.072 23 C -0.168 4.168 24 C -0.158 4.158 25 C -0.169 4.169 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.380 0.620 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.415 0.585 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.294 0.706 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.360 -2.065 -2.113 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.132 3.868 3 O -0.384 6.384 4 C -0.197 4.197 5 C 0.290 3.710 6 O -0.425 6.425 7 N -0.294 5.294 8 C -0.054 4.054 9 C -0.086 4.086 10 C -0.247 4.247 11 C 0.074 3.926 12 C -0.503 4.503 13 H 0.084 0.916 14 C -0.162 4.162 15 N -0.477 5.477 16 Si 0.785 3.215 17 H -0.184 1.184 18 H -0.205 1.205 19 H -0.184 1.184 20 C -0.211 4.211 21 C -0.040 4.040 22 Cl -0.044 7.044 23 C -0.186 4.186 24 C -0.195 4.195 25 C -0.205 4.205 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.231 0.769 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.253 0.747 33 H 0.149 0.851 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.412 -1.683 -2.789 22.648 hybrid contribution 1.184 -0.354 -0.034 1.236 sum -21.228 -2.036 -2.822 21.511 Atomic orbital electron populations 1.21738 0.90111 1.03761 1.03226 1.20562 0.95177 0.80912 0.90176 1.86414 1.28244 1.26960 1.96780 1.22507 0.89235 1.05902 1.02060 1.21406 0.91383 0.76866 0.81327 1.90702 1.71021 1.47586 1.33168 1.43088 1.03804 1.60595 1.21924 1.16934 0.83563 0.96795 1.08085 1.20490 0.93741 0.96318 0.98084 1.21002 0.94230 1.00721 1.08776 1.17739 0.93344 0.90318 0.91218 1.19385 0.90939 1.37406 1.02608 0.91599 1.26629 0.95354 0.91135 1.03076 1.69664 1.10040 1.33918 1.34078 0.85605 0.78329 0.80410 0.77179 1.18385 1.20533 1.18445 1.20741 0.91828 0.99942 1.08542 1.20312 0.92117 0.90029 1.01572 1.98283 1.79077 1.47408 1.79582 1.22870 1.04329 0.99055 0.92366 1.22560 0.91995 1.01539 1.03426 1.23024 0.97759 1.03083 0.96673 0.91017 0.91974 0.89041 0.76859 0.85079 0.86006 0.74692 0.85143 0.87637 0.89524 0.86286 0.88100 0.89791 0.91019 0.88341 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.61 71.98 0.62 -1.16 16 2 C 0.17 3.26 0.92 -10.79 -0.01 3.25 16 3 O -0.57 -13.94 12.11 -134.49 -1.63 -15.57 16 4 C -0.16 -2.57 4.97 29.85 0.15 -2.43 16 5 C 0.50 12.86 7.04 87.66 0.62 13.48 16 6 O -0.55 -17.60 8.87 11.44 0.10 -17.50 16 7 N -0.65 -17.66 5.08 -303.03 -1.54 -19.20 16 8 C 0.04 1.52 6.34 38.58 0.24 1.77 16 9 C -0.07 -2.73 8.58 22.13 0.19 -2.54 16 10 C -0.23 -10.59 7.00 22.49 0.16 -10.44 16 11 C 0.08 3.80 5.07 -21.28 -0.11 3.70 16 12 C -0.47 -25.81 9.58 23.39 0.22 -25.59 16 13 H 0.07 3.83 8.06 -2.91 -0.02 3.80 16 14 C 0.05 2.78 5.48 85.24 0.47 3.25 16 15 N -0.85 -46.20 13.93 21.82 0.30 -45.90 16 16 Si 0.96 43.68 24.44 68.60 1.68 45.36 16 17 H -0.26 -11.22 6.53 99.48 0.65 -10.57 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.26 -12.39 6.83 99.48 0.68 -11.71 16 20 C -0.19 -8.38 9.50 22.49 0.21 -8.16 16 21 C -0.01 -0.44 6.30 22.18 0.14 -0.30 16 22 Cl -0.07 -2.14 27.85 -2.72 -0.08 -2.21 16 23 C -0.17 -3.58 3.93 -10.79 -0.04 -3.62 16 24 C -0.16 -4.07 7.84 30.62 0.24 -3.84 16 25 C -0.17 -3.39 9.73 30.62 0.30 -3.09 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.93 7.48 -2.38 -0.02 0.91 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.38 10.10 5.50 -74.06 -0.41 9.70 16 30 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.42 8.82 7.92 -92.71 -0.73 8.09 16 33 H 0.13 5.12 6.22 -2.91 -0.02 5.10 16 34 H 0.11 4.97 4.56 -2.91 -0.01 4.96 16 35 H 0.29 14.46 8.30 -92.70 -0.77 13.69 16 36 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 37 H 0.10 2.12 8.11 -2.39 -0.02 2.10 16 38 H 0.08 2.36 6.31 -2.38 -0.02 2.34 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.09 1.87 7.67 -2.39 -0.02 1.85 16 Total: -1.00 -60.43 340.67 2.10 -58.33 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.14 Total: 32.41 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 3.40 Total: -35.72 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -1.23 Total: -65.09 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -1.53 Total: -33.07 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.68 Total: 45.36 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.08 Total: -2.21 kcal Total: -60.43 2.10 -58.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452646843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.936 kcal (2) G-P(sol) polarization free energy of solvation -60.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds