Wall clock time and date at job start Tue Mar 31 2020 14:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47181 * 2 1 4 4 H 1.09001 * 109.82035 * 54.43682 * 3 2 1 5 5 C 1.54383 * 109.82904 * 175.41630 * 3 2 1 6 6 C 1.55412 * 102.31061 * 140.79935 * 5 3 2 7 7 C 1.54941 * 100.89434 * 325.99102 * 6 5 3 8 8 H 1.09001 * 110.30682 * 277.35826 * 7 6 5 9 9 C 1.50693 * 110.31172 * 155.28787 * 7 6 5 10 10 O 1.21292 * 120.00134 * 246.38806 * 9 7 6 11 11 N 1.34779 * 120.00261 * 66.38697 * 9 7 6 12 12 C 1.39266 * 120.00134 * 184.65889 * 11 9 7 13 13 C 1.39467 * 119.84114 * 329.18994 * 12 11 9 14 14 C 1.36380 * 120.17632 * 180.29351 * 13 12 11 15 15 C 1.40888 * 119.85117 * 359.72783 * 14 13 12 16 16 C 1.41147 * 120.15667 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00379 * 28.87490 * 16 15 14 18 18 C 1.39908 * 119.99661 * 208.87674 * 16 15 14 19 19 N 1.30875 * 120.00054 * 16.23218 * 18 16 15 20 20 Si 1.86800 * 119.99920 * 196.23456 * 18 16 15 21 21 H 1.48496 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47119 * 119.99652 * 20 18 16 23 23 H 1.48491 * 109.47077 * 239.99830 * 20 18 16 24 24 C 1.40844 * 119.68121 * 359.97438 * 15 14 13 25 25 C 1.36474 * 119.82085 * 0.02562 * 24 15 14 26 26 Cl 1.73599 * 119.92596 * 179.97438 * 25 24 15 27 27 O 1.43232 * 109.83118 * 293.54507 * 3 2 1 28 28 H 1.08997 * 109.46509 * 299.99856 * 1 2 3 29 29 H 1.09002 * 109.46772 * 59.99472 * 1 2 3 30 30 H 1.08991 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46876 * 240.00572 * 2 1 3 32 32 H 1.08996 * 109.47433 * 120.00640 * 2 1 3 33 33 H 1.09005 * 110.84349 * 259.06306 * 5 3 2 34 34 H 1.09004 * 110.84991 * 22.47538 * 5 3 2 35 35 H 1.09000 * 111.20931 * 208.05955 * 6 5 3 36 36 H 1.09003 * 111.08227 * 83.86555 * 6 5 3 37 37 H 0.96997 * 119.99654 * 4.66732 * 11 9 7 38 38 H 1.07996 * 119.91054 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.06921 * 179.74867 * 14 13 12 40 40 H 0.96996 * 119.99769 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.09021 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6010 1.9898 0.8342 5 6 3.5795 1.4537 0.1161 6 6 3.9761 2.6067 -0.8475 7 6 2.8863 2.4636 -1.9396 8 1 3.1675 1.6915 -2.6557 9 6 2.6767 3.7787 -2.6449 10 8 1.6228 4.3679 -2.5290 11 7 3.6602 4.3002 -3.4046 12 6 3.5040 5.5599 -3.9775 13 6 2.2324 6.0060 -4.3368 14 6 2.0722 7.2360 -4.9038 15 6 3.1945 8.0595 -5.1213 16 6 3.0361 9.3338 -5.7071 17 1 2.1136 9.8791 -5.5726 18 6 4.0741 9.8906 -6.4620 19 7 5.0489 9.1317 -6.8940 20 14 4.0687 11.7171 -6.8534 21 1 2.8658 12.3483 -6.2536 22 1 5.2901 12.3474 -6.2912 23 1 4.0462 11.9077 -8.3259 24 6 4.4751 7.6054 -4.7503 25 6 4.6202 6.3723 -4.1839 26 17 6.1974 5.8096 -3.7262 27 8 1.6946 2.0800 -1.2352 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8899 1.6763 1.1370 34 1 4.0006 0.5052 -0.2174 35 1 4.9714 2.4489 -1.2627 36 1 3.9089 3.5742 -0.3499 37 1 4.4769 3.7981 -3.5524 38 1 1.3729 5.3737 -4.1704 39 1 1.0872 7.5781 -5.1851 40 1 5.7688 9.5177 -7.4171 41 1 5.3399 8.2314 -4.9136 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452647462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:35 Heat of formation + Delta-G solvation = -80.455727 kcal Electronic energy + Delta-G solvation = -24593.881194 eV Core-core repulsion = 20884.748097 eV Total energy + Delta-G solvation = -3709.133097 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.40167 -39.00246 -37.32306 -35.57058 -34.49494 -33.72124 -33.15045 -32.20974 -29.65820 -29.44323 -28.36777 -25.42123 -24.08782 -22.16483 -21.85425 -21.23709 -20.68999 -19.66877 -17.79248 -17.33002 -17.12190 -16.04439 -15.76771 -15.36311 -14.69754 -14.55784 -14.31395 -14.23030 -13.77835 -13.39323 -13.16635 -13.06424 -12.94570 -12.58872 -12.41725 -12.00887 -11.95389 -11.92925 -11.63660 -11.31826 -11.15988 -11.14990 -11.07002 -10.98037 -10.87840 -10.50978 -10.38380 -10.13369 -9.91112 -9.78456 -9.53502 -9.05850 -8.79425 -7.58460 -7.12283 -6.87360 -4.44485 2.34139 2.81198 2.92481 3.03624 3.07592 3.09083 3.20150 3.24927 3.86248 3.98984 4.26551 4.44952 4.46853 4.73438 4.86320 4.92046 4.96743 5.15737 5.22464 5.26949 5.46691 5.48758 5.57476 5.62450 5.69757 5.76496 5.85441 6.05586 6.16674 6.18515 6.51962 6.61923 6.83982 6.88734 6.99844 7.07443 7.28357 7.49978 7.65184 7.83550 8.06006 8.10379 8.38307 8.64175 8.72163 8.78988 10.06899 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.002880 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.133165 B = 9720.986566 C =10548.976218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.145 4.145 7 C 0.067 3.933 8 H 0.092 0.908 9 C 0.500 3.500 10 O -0.512 6.512 11 N -0.644 5.644 12 C 0.003 3.997 13 C -0.072 4.072 14 C -0.209 4.209 15 C 0.115 3.885 16 C -0.454 4.454 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.789 5.789 20 Si 0.910 3.090 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.274 1.274 24 C -0.143 4.143 25 C -0.015 4.015 26 Cl -0.121 7.121 27 O -0.344 6.344 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.398 0.602 38 H 0.125 0.875 39 H 0.103 0.897 40 H 0.283 0.717 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 -13.842 9.777 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.099 0.901 5 C -0.187 4.187 6 C -0.183 4.183 7 C 0.006 3.994 8 H 0.109 0.891 9 C 0.286 3.714 10 O -0.387 6.387 11 N -0.289 5.289 12 C -0.090 4.090 13 C -0.092 4.092 14 C -0.229 4.229 15 C 0.112 3.888 16 C -0.483 4.483 17 H 0.102 0.898 18 C -0.144 4.144 19 N -0.413 5.413 20 Si 0.734 3.266 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.164 4.164 25 C -0.043 4.043 26 Cl -0.093 7.093 27 O -0.262 6.262 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.232 0.768 38 H 0.142 0.858 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.684 -13.454 9.717 16.611 hybrid contribution 0.998 0.416 -0.277 1.117 sum 1.683 -13.039 9.440 16.185 Atomic orbital electron populations 1.21714 0.95194 1.01255 1.02621 1.21904 0.97164 0.95627 1.02226 1.22870 0.94153 0.93511 0.87667 0.90073 1.23201 0.95343 0.99175 1.00959 1.23252 0.98856 1.00281 0.95898 1.22763 0.86479 0.94870 0.95326 0.89063 1.20312 0.84704 0.86839 0.79578 1.90672 1.25684 1.60928 1.61376 1.42812 1.19530 1.17865 1.48722 1.16831 0.93229 0.86854 1.12096 1.20565 0.94740 0.97001 0.96917 1.20843 0.98506 0.94922 1.08667 1.17556 0.90057 0.92475 0.88743 1.19577 1.00958 1.00929 1.26867 0.89806 1.25953 0.94289 1.00229 0.93948 1.69819 1.09210 1.36975 1.25341 0.86220 0.79582 0.82048 0.78718 1.18267 1.19605 1.19883 1.20793 0.99383 0.93935 1.02271 1.20323 0.82028 0.95846 1.06123 1.98247 1.29170 1.89881 1.92013 1.88564 1.27380 1.77658 1.32618 0.92862 0.91726 0.93031 0.91499 0.91134 0.89729 0.90121 0.89029 0.89549 0.76793 0.85754 0.87905 0.90601 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.82 37.16 0.37 -1.02 16 2 C -0.13 -1.13 5.50 -26.73 -0.15 -1.28 16 3 C 0.08 0.79 3.52 -26.01 -0.09 0.70 16 4 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 5 C -0.15 -1.23 6.55 -24.73 -0.16 -1.39 16 6 C -0.14 -1.50 6.57 -24.43 -0.16 -1.66 16 7 C 0.07 0.89 3.86 -26.86 -0.10 0.78 16 8 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 9 C 0.50 8.93 7.04 -10.99 -0.08 8.85 16 10 O -0.51 -11.34 13.69 -13.79 -0.19 -11.53 16 11 N -0.64 -11.49 5.07 -9.71 -0.05 -11.54 16 12 C 0.00 0.08 6.39 -83.52 -0.53 -0.46 16 13 C -0.07 -1.70 8.65 -39.79 -0.34 -2.04 16 14 C -0.21 -5.12 9.74 -39.25 -0.38 -5.50 16 15 C 0.11 2.97 5.52 -106.81 -0.59 2.38 16 16 C -0.45 -11.59 9.02 -37.85 -0.34 -11.93 16 17 H 0.08 2.06 7.90 -52.49 -0.41 1.64 16 18 C 0.07 1.80 5.13 -17.33 -0.09 1.71 16 19 N -0.79 -19.62 11.16 55.55 0.62 -19.00 16 20 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 C -0.14 -3.58 8.37 -39.23 -0.33 -3.91 16 25 C -0.02 -0.34 6.30 -39.72 -0.25 -0.59 16 26 Cl -0.12 -2.26 27.84 -51.86 -1.44 -3.71 16 27 O -0.34 -5.01 9.88 -54.57 -0.54 -5.55 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.72 7.88 -51.93 -0.41 0.31 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.54 7.85 -51.93 -0.41 0.14 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.02 8.05 -51.93 -0.42 0.61 16 37 H 0.40 5.94 7.92 -40.82 -0.32 5.61 16 38 H 0.12 2.92 5.86 -52.49 -0.31 2.62 16 39 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 40 H 0.28 6.39 8.30 -40.82 -0.34 6.06 16 41 H 0.13 3.32 6.43 -52.49 -0.34 2.98 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -29.14 353.92 -10.09 -39.23 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.56 Total: 9.08 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -3.24 Total: -15.36 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.57 Total: -30.54 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.73 Total: -17.07 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.44 Total: -3.71 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.14 -10.09 -39.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.226 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds