Wall clock time and date at job start Tue Mar 31 2020 14:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47181 * 2 1 4 4 H 1.09001 * 109.82035 * 54.43682 * 3 2 1 5 5 C 1.54383 * 109.82904 * 175.41630 * 3 2 1 6 6 C 1.55412 * 102.31061 * 140.79935 * 5 3 2 7 7 C 1.54941 * 100.89434 * 325.99102 * 6 5 3 8 8 H 1.09001 * 110.30682 * 277.35826 * 7 6 5 9 9 C 1.50693 * 110.31172 * 155.28787 * 7 6 5 10 10 O 1.21292 * 120.00134 * 246.38806 * 9 7 6 11 11 N 1.34779 * 120.00261 * 66.38697 * 9 7 6 12 12 C 1.39266 * 120.00134 * 184.65889 * 11 9 7 13 13 C 1.39467 * 119.84114 * 329.18994 * 12 11 9 14 14 C 1.36380 * 120.17632 * 180.29351 * 13 12 11 15 15 C 1.40888 * 119.85117 * 359.72783 * 14 13 12 16 16 C 1.41147 * 120.15667 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00379 * 28.87490 * 16 15 14 18 18 C 1.39908 * 119.99661 * 208.87674 * 16 15 14 19 19 N 1.30875 * 120.00054 * 16.23218 * 18 16 15 20 20 Si 1.86800 * 119.99920 * 196.23456 * 18 16 15 21 21 H 1.48496 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47119 * 119.99652 * 20 18 16 23 23 H 1.48491 * 109.47077 * 239.99830 * 20 18 16 24 24 C 1.40844 * 119.68121 * 359.97438 * 15 14 13 25 25 C 1.36474 * 119.82085 * 0.02562 * 24 15 14 26 26 Cl 1.73599 * 119.92596 * 179.97438 * 25 24 15 27 27 O 1.43232 * 109.83118 * 293.54507 * 3 2 1 28 28 H 1.08997 * 109.46509 * 299.99856 * 1 2 3 29 29 H 1.09002 * 109.46772 * 59.99472 * 1 2 3 30 30 H 1.08991 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46876 * 240.00572 * 2 1 3 32 32 H 1.08996 * 109.47433 * 120.00640 * 2 1 3 33 33 H 1.09005 * 110.84349 * 259.06306 * 5 3 2 34 34 H 1.09004 * 110.84991 * 22.47538 * 5 3 2 35 35 H 1.09000 * 111.20931 * 208.05955 * 6 5 3 36 36 H 1.09003 * 111.08227 * 83.86555 * 6 5 3 37 37 H 0.96997 * 119.99654 * 4.66732 * 11 9 7 38 38 H 1.07996 * 119.91054 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.06921 * 179.74867 * 14 13 12 40 40 H 0.96996 * 119.99769 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.09021 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6010 1.9898 0.8342 5 6 3.5795 1.4537 0.1161 6 6 3.9761 2.6067 -0.8475 7 6 2.8863 2.4636 -1.9396 8 1 3.1675 1.6915 -2.6557 9 6 2.6767 3.7787 -2.6449 10 8 1.6228 4.3679 -2.5290 11 7 3.6602 4.3002 -3.4046 12 6 3.5040 5.5599 -3.9775 13 6 2.2324 6.0060 -4.3368 14 6 2.0722 7.2360 -4.9038 15 6 3.1945 8.0595 -5.1213 16 6 3.0361 9.3338 -5.7071 17 1 2.1136 9.8791 -5.5726 18 6 4.0741 9.8906 -6.4620 19 7 5.0489 9.1317 -6.8940 20 14 4.0687 11.7171 -6.8534 21 1 2.8658 12.3483 -6.2536 22 1 5.2901 12.3474 -6.2912 23 1 4.0462 11.9077 -8.3259 24 6 4.4751 7.6054 -4.7503 25 6 4.6202 6.3723 -4.1839 26 17 6.1974 5.8096 -3.7262 27 8 1.6946 2.0800 -1.2352 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8899 1.6763 1.1370 34 1 4.0006 0.5052 -0.2174 35 1 4.9714 2.4489 -1.2627 36 1 3.9089 3.5742 -0.3499 37 1 4.4769 3.7981 -3.5524 38 1 1.3729 5.3737 -4.1704 39 1 1.0872 7.5781 -5.1851 40 1 5.7688 9.5177 -7.4171 41 1 5.3399 8.2314 -4.9136 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452647462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:35 Heat of formation + Delta-G solvation = -95.760970 kcal Electronic energy + Delta-G solvation = -24594.544879 eV Core-core repulsion = 20884.748097 eV Total energy + Delta-G solvation = -3709.796782 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.67061 -40.30877 -38.98846 -37.26459 -36.18072 -34.92691 -34.45615 -33.13845 -31.32772 -31.17827 -29.58131 -27.00754 -25.22773 -23.67888 -22.87477 -22.68710 -21.90526 -21.03061 -19.49114 -18.76060 -18.43679 -17.37086 -17.07121 -16.86876 -16.12860 -16.03937 -15.72869 -15.25767 -15.04409 -14.75631 -14.39859 -14.37659 -14.13372 -13.99404 -13.88290 -13.68654 -13.07327 -12.97928 -12.91727 -12.78368 -12.63827 -12.40180 -12.19035 -12.05767 -11.90705 -11.86847 -11.78625 -11.60701 -11.57234 -11.30819 -10.91190 -10.68717 -10.29386 -9.44078 -8.93751 -8.67721 -6.35727 0.58883 0.91810 1.34907 1.39556 1.41973 1.55365 1.68067 1.95398 2.20824 2.64300 2.97083 3.41011 3.54127 3.67175 3.76902 3.99932 4.09296 4.22482 4.30579 4.34663 4.47025 4.54648 4.68252 4.82446 4.85098 4.88964 4.95582 4.96813 4.99733 5.08768 5.14105 5.18558 5.22790 5.34773 5.41197 5.43735 5.64788 5.81317 5.94330 6.03226 6.19784 6.47658 6.59414 6.81431 6.84898 7.26028 8.28730 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.002880 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.133165 B = 9720.986566 C =10548.976218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.064 3.936 4 H 0.072 0.928 5 C -0.136 4.136 6 C -0.143 4.143 7 C 0.071 3.929 8 H 0.123 0.877 9 C 0.497 3.503 10 O -0.560 6.560 11 N -0.636 5.636 12 C 0.014 3.986 13 C -0.083 4.083 14 C -0.223 4.223 15 C 0.088 3.912 16 C -0.488 4.488 17 H 0.081 0.919 18 C 0.038 3.962 19 N -0.818 5.818 20 Si 0.983 3.017 21 H -0.259 1.259 22 H -0.263 1.263 23 H -0.265 1.265 24 C -0.159 4.159 25 C -0.019 4.019 26 Cl -0.083 7.083 27 O -0.379 6.379 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.415 0.585 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.292 0.708 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 -15.540 10.806 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.007 3.993 4 H 0.090 0.910 5 C -0.173 4.173 6 C -0.180 4.180 7 C 0.010 3.990 8 H 0.140 0.860 9 C 0.285 3.715 10 O -0.438 6.438 11 N -0.282 5.282 12 C -0.081 4.081 13 C -0.103 4.103 14 C -0.243 4.243 15 C 0.085 3.915 16 C -0.517 4.517 17 H 0.099 0.901 18 C -0.178 4.178 19 N -0.443 5.443 20 Si 0.803 3.197 21 H -0.183 1.183 22 H -0.188 1.188 23 H -0.190 1.190 24 C -0.180 4.180 25 C -0.048 4.048 26 Cl -0.054 7.054 27 O -0.298 6.298 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.252 0.748 38 H 0.139 0.861 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.559 -15.202 10.760 18.800 hybrid contribution 0.413 0.792 -0.509 1.028 sum 2.973 -14.410 10.251 17.933 Atomic orbital electron populations 1.21725 0.96209 1.01796 1.01248 1.21899 0.96268 0.94524 1.03650 1.23127 0.96158 0.94170 0.85841 0.90955 1.23206 0.93213 0.99378 1.01516 1.23302 0.99113 1.00338 0.95296 1.22876 0.87283 0.92379 0.96448 0.85964 1.21331 0.83472 0.88047 0.78622 1.90648 1.27646 1.62683 1.62865 1.42763 1.20490 1.16509 1.48444 1.16888 0.92471 0.88266 1.10462 1.20643 0.95589 0.96778 0.97285 1.20972 0.98558 0.95483 1.09314 1.17849 0.90840 0.93205 0.89621 1.19784 1.01903 1.01557 1.28483 0.90131 1.26742 0.93440 1.04506 0.93137 1.69852 1.09847 1.38871 1.25754 0.85141 0.79611 0.76175 0.78738 1.18287 1.18756 1.18976 1.20721 0.98672 0.95004 1.03578 1.20324 0.84089 0.95175 1.05201 1.98245 1.26300 1.89324 1.91552 1.88546 1.28687 1.78256 1.34294 0.92891 0.94468 0.91522 0.91103 0.88465 0.87954 0.87573 0.86262 0.91542 0.74798 0.86081 0.87719 0.89751 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.82 71.98 0.71 -1.94 16 2 C -0.13 -1.83 5.50 30.60 0.17 -1.66 16 3 C 0.06 1.21 3.52 31.06 0.11 1.32 16 4 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 5 C -0.14 -1.72 6.55 31.89 0.21 -1.51 16 6 C -0.14 -2.52 6.57 32.09 0.21 -2.31 16 7 C 0.07 1.74 3.86 30.51 0.12 1.86 16 8 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 9 C 0.50 17.52 7.04 87.65 0.62 18.14 16 10 O -0.56 -25.45 13.69 15.42 0.21 -25.23 16 11 N -0.64 -22.05 5.07 -303.02 -1.54 -23.59 16 12 C 0.01 0.61 6.39 38.58 0.25 0.86 16 13 C -0.08 -4.02 8.65 22.13 0.19 -3.83 16 14 C -0.22 -11.43 9.74 22.49 0.22 -11.21 16 15 C 0.09 4.72 5.52 -21.28 -0.12 4.61 16 16 C -0.49 -25.82 9.02 23.39 0.21 -25.61 16 17 H 0.08 4.14 7.90 -2.91 -0.02 4.11 16 18 C 0.04 1.85 5.13 85.24 0.44 2.29 16 19 N -0.82 -41.28 11.16 21.82 0.24 -41.03 16 20 Si 0.98 37.22 29.59 68.60 2.03 39.25 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 23 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 24 C -0.16 -8.15 8.37 22.50 0.19 -7.96 16 25 C -0.02 -0.87 6.30 22.18 0.14 -0.73 16 26 Cl -0.08 -2.95 27.84 -2.72 -0.08 -3.03 16 27 O -0.38 -10.71 9.88 -130.49 -1.29 -11.99 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.83 7.88 -2.39 -0.02 0.82 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.11 0.86 7.85 -2.38 -0.02 0.84 16 35 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.45 8.05 -2.39 -0.02 1.43 16 37 H 0.41 11.44 7.92 -92.71 -0.73 10.71 16 38 H 0.12 5.93 5.86 -2.91 -0.02 5.92 16 39 H 0.10 5.12 8.06 -2.91 -0.02 5.10 16 40 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 41 H 0.12 6.15 6.43 -2.91 -0.02 6.13 16 Total: -1.00 -66.40 353.92 3.56 -62.84 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.32 Total: 30.48 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.65 Total: -27.69 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -1.29 Total: -64.62 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -1.08 Total: -37.23 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Atomic # 17 Polarization: -2.95 SS G_CDS: -0.08 Total: -3.03 kcal Total: -66.40 3.56 -62.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452647462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.924 kcal (2) G-P(sol) polarization free energy of solvation -66.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds