Wall clock time and date at job start Tue Mar 31 2020 14:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 119.99878 * 2 1 4 4 N 1.46495 * 109.47292 * 125.00312 * 3 2 1 5 5 C 1.46506 * 119.99849 * 270.00132 * 4 3 2 6 6 C 1.50698 * 109.46915 * 270.00160 * 5 4 3 7 7 H 1.08001 * 120.00360 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00207 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00708 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99632 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47010 * 90.00390 * 10 8 6 12 12 H 1.48502 * 109.47263 * 209.99969 * 10 8 6 13 13 H 1.48493 * 109.47353 * 330.00520 * 10 8 6 14 14 C 1.34767 * 120.00311 * 90.00141 * 4 3 2 15 15 O 1.21284 * 120.00112 * 180.02562 * 14 4 3 16 16 C 1.50702 * 120.00089 * 359.97438 * 14 4 3 17 17 O 1.42895 * 109.47289 * 180.02562 * 16 14 4 18 18 C 1.42902 * 113.99895 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.47123 * 180.02562 * 18 17 16 20 20 C 1.38270 * 119.99101 * 270.27500 * 19 18 17 21 21 C 1.38215 * 120.02537 * 180.27948 * 20 19 18 22 22 C 1.38238 * 120.01126 * 359.44038 * 21 20 19 23 23 C 1.38325 * 119.98878 * 0.28199 * 22 21 20 24 24 Cl 1.73606 * 120.01335 * 179.97438 * 23 22 21 25 25 C 1.38193 * 119.99765 * 89.99902 * 19 18 17 26 26 H 1.08004 * 119.99459 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00560 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00560 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46822 * 4.99686 * 3 2 1 30 30 H 1.09002 * 109.47082 * 245.00651 * 3 2 1 31 31 H 1.09006 * 109.47186 * 29.99621 * 5 4 3 32 32 H 1.08996 * 109.46906 * 149.99780 * 5 4 3 33 33 H 0.97002 * 120.00296 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.46911 * 59.99650 * 16 14 4 35 35 H 1.09002 * 109.47203 * 300.00368 * 16 14 4 36 36 H 1.08998 * 109.47558 * 59.99668 * 18 17 16 37 37 H 1.09000 * 109.47085 * 299.99520 * 18 17 16 38 38 H 1.07997 * 119.98420 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.99636 * 179.72646 * 21 20 19 40 40 H 1.07999 * 120.00577 * 180.25936 * 22 21 20 41 41 H 1.08003 * 120.00423 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5588 1.8650 2.4248 6 6 2.8441 3.3437 2.4803 7 1 3.3038 3.8371 1.6367 8 6 2.5193 4.0666 3.6085 9 7 2.7686 5.3570 3.6572 10 14 1.7248 3.2132 5.0680 11 1 2.7809 2.7222 5.9893 12 1 0.8488 4.1734 5.7862 13 1 0.9133 2.0657 4.5888 14 6 4.2496 0.8664 0.9823 15 8 5.0196 0.8882 1.9191 16 6 4.6969 0.3176 -0.3481 17 8 6.0569 -0.1107 -0.2538 18 6 6.5819 -0.6502 -1.4684 19 6 8.0141 -1.0677 -1.2550 20 6 9.0377 -0.1653 -1.4782 21 6 10.3518 -0.5492 -1.2882 22 6 10.6429 -1.8322 -0.8637 23 6 9.6190 -2.7337 -0.6348 24 17 9.9839 -4.3453 -0.1024 25 6 8.3039 -2.3506 -0.8308 26 1 -0.5399 -0.9354 0.0004 27 1 -0.5401 0.9352 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6212 1.4027 -0.9315 31 1 1.4887 1.6967 2.5459 32 1 3.0990 1.3604 3.2258 33 1 2.5397 5.8656 4.4508 34 1 4.6118 1.0939 -1.1085 35 1 4.0678 -0.5295 -0.6218 36 1 6.5364 0.1064 -2.2517 37 1 5.9917 -1.5170 -1.7659 38 1 8.8104 0.8386 -1.8050 39 1 11.1511 0.1548 -1.4669 40 1 11.6695 -2.1307 -0.7113 41 1 7.5041 -3.0542 -0.6526 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457825085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:59 Heat of formation + Delta-G solvation = -32.819347 kcal Electronic energy + Delta-G solvation = -23905.370939 eV Core-core repulsion = 20198.303510 eV Total energy + Delta-G solvation = -3707.067428 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80717 -39.26496 -37.43061 -36.61927 -35.72497 -33.22977 -32.30824 -32.13224 -30.98733 -29.29465 -27.34346 -25.89440 -25.39292 -22.95195 -22.21467 -21.74361 -20.12150 -18.62933 -17.45631 -16.94253 -16.84476 -16.43463 -16.38092 -15.67805 -15.42132 -15.30952 -14.65198 -14.29747 -14.17298 -14.01640 -13.66601 -13.55841 -13.10290 -12.90052 -12.38226 -12.21758 -12.06859 -11.80990 -11.75317 -11.66990 -11.60769 -11.47411 -11.19221 -11.01206 -10.95975 -10.53283 -10.15757 -9.75087 -9.56946 -9.32877 -9.26574 -9.01240 -8.91821 -8.58869 -7.79662 -6.08937 -4.07881 0.85407 0.97659 1.87606 2.29482 3.08567 3.27002 3.29969 3.35859 3.38266 3.57683 4.17884 4.39891 4.50424 4.57550 4.76827 4.90757 4.93928 4.99798 5.03393 5.16115 5.17517 5.23625 5.26139 5.29540 5.34161 5.47627 5.55230 5.61267 5.89002 5.92876 6.04999 6.06691 6.23205 6.50643 6.63297 6.65534 6.78908 6.90836 7.03537 7.32463 7.60274 8.16801 8.45920 8.90539 8.95913 9.51223 11.04373 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.002633 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.202467 B =10632.668851 C =11306.704855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.173 4.173 3 C 0.134 3.866 4 N -0.588 5.588 5 C 0.219 3.781 6 C -0.530 4.530 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.509 3.491 15 O -0.516 6.516 16 C 0.045 3.955 17 O -0.354 6.354 18 C 0.099 3.901 19 C -0.074 4.074 20 C -0.090 4.090 21 C -0.110 4.110 22 C -0.106 4.106 23 C -0.039 4.039 24 Cl -0.073 7.073 25 C -0.087 4.087 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.720 -16.147 -15.711 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.192 4.192 3 C 0.011 3.989 4 N -0.321 5.321 5 C 0.099 3.901 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.294 3.706 15 O -0.390 6.390 16 C -0.035 4.035 17 O -0.272 6.272 18 C 0.023 3.977 19 C -0.074 4.074 20 C -0.108 4.108 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.065 4.065 24 Cl -0.044 7.044 25 C -0.106 4.106 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.275 -16.085 -14.840 23.397 hybrid contribution -0.608 -0.456 0.621 0.981 sum 7.667 -16.542 -14.219 23.121 Atomic orbital electron populations 1.23856 0.95830 1.01916 1.00182 1.23452 0.96486 0.99001 1.00253 1.20642 0.93268 0.95552 0.89484 1.47845 1.10278 1.60811 1.13204 1.19668 0.94923 0.95158 0.80373 1.21321 1.41230 0.91095 1.03164 0.90705 1.24841 0.95261 0.94719 0.98101 1.69891 1.47743 1.06623 1.29292 0.86869 0.79896 0.79674 0.83394 1.19846 1.21052 1.19012 1.19924 0.82413 0.79115 0.89167 1.90714 1.52095 1.54773 1.41459 1.22379 0.84194 0.99431 0.97505 1.88127 1.25587 1.81390 1.32096 1.21339 0.90519 0.98038 0.87828 1.19524 0.94678 0.93185 1.00010 1.21235 0.92262 0.99361 0.97979 1.21127 0.96877 0.95556 0.99293 1.21097 0.98787 0.93180 0.99426 1.20875 0.94669 0.87122 1.03844 1.98372 1.94976 1.22163 1.88892 1.20959 0.94946 0.96610 0.98108 0.88682 0.88128 0.87713 0.88941 0.90588 0.95033 0.94521 0.92540 0.90527 0.90815 0.91837 0.92120 0.84975 0.84773 0.84910 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 14.32 29.02 0.42 -1.65 16 2 C -0.17 -2.18 9.74 -36.02 -0.35 -2.53 16 3 C 0.13 2.01 5.65 -5.19 -0.03 1.98 16 4 N -0.59 -11.93 2.44 -176.43 -0.43 -12.36 16 5 C 0.22 5.36 4.23 -5.19 -0.02 5.34 16 6 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 7 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 10 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 14 C 0.51 10.53 7.75 -10.99 -0.09 10.45 16 15 O -0.52 -13.40 16.08 -14.36 -0.23 -13.63 16 16 C 0.04 0.66 4.97 36.01 0.18 0.84 16 17 O -0.35 -5.62 9.86 -55.14 -0.54 -6.16 16 18 C 0.10 1.08 6.06 36.01 0.22 1.30 16 19 C -0.07 -0.83 5.51 -104.63 -0.58 -1.40 16 20 C -0.09 -0.93 9.70 -39.58 -0.38 -1.31 16 21 C -0.11 -1.00 10.05 -39.59 -0.40 -1.40 16 22 C -0.11 -1.00 9.83 -39.55 -0.39 -1.39 16 23 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 24 Cl -0.07 -0.73 28.96 -51.86 -1.50 -2.23 16 25 C -0.09 -0.97 9.49 -39.55 -0.38 -1.34 16 26 H 0.09 0.93 8.06 -52.48 -0.42 0.50 16 27 H 0.10 1.13 7.84 -52.49 -0.41 0.72 16 28 H 0.10 1.22 7.83 -52.49 -0.41 0.81 16 29 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 30 H 0.08 0.91 6.44 -51.93 -0.33 0.58 16 31 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 32 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.08 0.94 7.40 -51.93 -0.38 0.55 16 35 H 0.07 0.84 7.77 -51.93 -0.40 0.44 16 36 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 38 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -35.83 370.35 -9.12 -44.95 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.62 Total: -0.98 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.49 Total: -5.28 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.34 Total: -39.27 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.77 Total: -19.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.83 -9.12 -44.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457825085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.134 kcal (2) G-P(sol) polarization free energy of solvation -35.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds