Wall clock time and date at job start Tue Mar 31 2020 14:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 119.99878 * 2 1 4 4 N 1.46495 * 109.47292 * 125.00312 * 3 2 1 5 5 C 1.46506 * 119.99849 * 270.00132 * 4 3 2 6 6 C 1.50698 * 109.46915 * 270.00160 * 5 4 3 7 7 H 1.08001 * 120.00360 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00207 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00708 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99632 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47010 * 90.00390 * 10 8 6 12 12 H 1.48502 * 109.47263 * 209.99969 * 10 8 6 13 13 H 1.48493 * 109.47353 * 330.00520 * 10 8 6 14 14 C 1.34767 * 120.00311 * 90.00141 * 4 3 2 15 15 O 1.21284 * 120.00112 * 180.02562 * 14 4 3 16 16 C 1.50702 * 120.00089 * 359.97438 * 14 4 3 17 17 O 1.42895 * 109.47289 * 180.02562 * 16 14 4 18 18 C 1.42902 * 113.99895 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.47123 * 180.02562 * 18 17 16 20 20 C 1.38270 * 119.99101 * 270.27500 * 19 18 17 21 21 C 1.38215 * 120.02537 * 180.27948 * 20 19 18 22 22 C 1.38238 * 120.01126 * 359.44038 * 21 20 19 23 23 C 1.38325 * 119.98878 * 0.28199 * 22 21 20 24 24 Cl 1.73606 * 120.01335 * 179.97438 * 23 22 21 25 25 C 1.38193 * 119.99765 * 89.99902 * 19 18 17 26 26 H 1.08004 * 119.99459 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00560 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00560 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46822 * 4.99686 * 3 2 1 30 30 H 1.09002 * 109.47082 * 245.00651 * 3 2 1 31 31 H 1.09006 * 109.47186 * 29.99621 * 5 4 3 32 32 H 1.08996 * 109.46906 * 149.99780 * 5 4 3 33 33 H 0.97002 * 120.00296 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.46911 * 59.99650 * 16 14 4 35 35 H 1.09002 * 109.47203 * 300.00368 * 16 14 4 36 36 H 1.08998 * 109.47558 * 59.99668 * 18 17 16 37 37 H 1.09000 * 109.47085 * 299.99520 * 18 17 16 38 38 H 1.07997 * 119.98420 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.99636 * 179.72646 * 21 20 19 40 40 H 1.07999 * 120.00577 * 180.25936 * 22 21 20 41 41 H 1.08003 * 120.00423 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5588 1.8650 2.4248 6 6 2.8441 3.3437 2.4803 7 1 3.3038 3.8371 1.6367 8 6 2.5193 4.0666 3.6085 9 7 2.7686 5.3570 3.6572 10 14 1.7248 3.2132 5.0680 11 1 2.7809 2.7222 5.9893 12 1 0.8488 4.1734 5.7862 13 1 0.9133 2.0657 4.5888 14 6 4.2496 0.8664 0.9823 15 8 5.0196 0.8882 1.9191 16 6 4.6969 0.3176 -0.3481 17 8 6.0569 -0.1107 -0.2538 18 6 6.5819 -0.6502 -1.4684 19 6 8.0141 -1.0677 -1.2550 20 6 9.0377 -0.1653 -1.4782 21 6 10.3518 -0.5492 -1.2882 22 6 10.6429 -1.8322 -0.8637 23 6 9.6190 -2.7337 -0.6348 24 17 9.9839 -4.3453 -0.1024 25 6 8.3039 -2.3506 -0.8308 26 1 -0.5399 -0.9354 0.0004 27 1 -0.5401 0.9352 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6212 1.4027 -0.9315 31 1 1.4887 1.6967 2.5459 32 1 3.0990 1.3604 3.2258 33 1 2.5397 5.8656 4.4508 34 1 4.6118 1.0939 -1.1085 35 1 4.0678 -0.5295 -0.6218 36 1 6.5364 0.1064 -2.2517 37 1 5.9917 -1.5170 -1.7659 38 1 8.8104 0.8386 -1.8050 39 1 11.1511 0.1548 -1.4669 40 1 11.6695 -2.1307 -0.7113 41 1 7.5041 -3.0542 -0.6526 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457825085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:59 Heat of formation + Delta-G solvation = -54.428006 kcal Electronic energy + Delta-G solvation = -23906.307960 eV Core-core repulsion = 20198.303510 eV Total energy + Delta-G solvation = -3708.004450 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.95283 -40.39632 -38.50633 -37.43107 -37.19536 -35.06984 -33.75638 -33.11052 -31.73599 -30.97054 -28.69464 -26.94167 -26.67584 -24.12538 -23.69699 -22.51656 -21.21851 -20.05563 -19.10192 -18.45255 -17.95007 -17.64780 -17.37164 -16.80202 -16.50904 -16.46934 -16.03860 -15.75865 -15.37791 -15.01221 -14.70705 -14.48749 -14.44465 -14.26441 -14.05720 -13.59423 -13.28537 -13.08067 -13.01931 -12.86167 -12.53593 -12.51533 -12.40024 -12.29590 -12.24047 -11.94455 -11.77335 -11.73899 -10.84034 -10.72317 -10.66279 -10.30906 -9.98724 -9.72139 -9.48356 -8.34688 -6.39525 0.08121 0.21790 1.10263 1.29241 1.33999 1.36130 1.44186 1.71408 2.04077 2.30184 2.57456 2.99744 3.14417 3.59372 3.80069 3.84885 4.02179 4.05837 4.14159 4.19718 4.25161 4.28755 4.30315 4.41837 4.47912 4.52335 4.74961 4.75855 4.86153 4.89979 4.92093 5.09189 5.18679 5.31731 5.44727 5.47362 5.49805 5.74072 5.78500 5.92741 6.05116 6.24334 6.61612 6.64332 7.20665 7.38206 8.82160 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.002633 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.202467 B =10632.668851 C =11306.704855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.185 4.185 3 C 0.128 3.872 4 N -0.593 5.593 5 C 0.228 3.772 6 C -0.536 4.536 7 H 0.031 0.969 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.944 3.056 11 H -0.279 1.279 12 H -0.273 1.273 13 H -0.238 1.238 14 C 0.495 3.505 15 O -0.584 6.584 16 C 0.058 3.942 17 O -0.393 6.393 18 C 0.096 3.904 19 C -0.092 4.092 20 C -0.103 4.103 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.053 4.053 24 Cl -0.073 7.073 25 C -0.101 4.101 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.050 0.950 32 H 0.014 0.986 33 H 0.269 0.731 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.152 0.848 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.674 -18.006 -17.028 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.204 4.204 3 C 0.007 3.993 4 N -0.324 5.324 5 C 0.106 3.894 6 C -0.574 4.574 7 H 0.050 0.950 8 C -0.186 4.186 9 N -0.584 5.584 10 Si 0.767 3.233 11 H -0.204 1.204 12 H -0.198 1.198 13 H -0.161 1.161 14 C 0.284 3.716 15 O -0.464 6.464 16 C -0.021 4.021 17 O -0.313 6.313 18 C 0.021 3.979 19 C -0.093 4.093 20 C -0.121 4.121 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.079 4.079 24 Cl -0.044 7.044 25 C -0.120 4.120 26 H 0.136 0.864 27 H 0.117 0.883 28 H 0.137 0.863 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.169 0.831 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.189 -17.966 -16.230 25.256 hybrid contribution -0.227 0.170 0.934 0.976 sum 6.963 -17.796 -15.296 24.477 Atomic orbital electron populations 1.24085 0.95544 1.02985 0.97891 1.23313 0.96773 0.98060 1.02222 1.20938 0.92803 0.96799 0.88781 1.47926 1.11441 1.59940 1.13140 1.19286 0.95452 0.92137 0.82528 1.21554 1.40526 0.93389 1.01939 0.95019 1.25811 0.95964 0.95356 1.01421 1.70038 1.49392 1.08456 1.30530 0.85770 0.79082 0.79459 0.79000 1.20446 1.19795 1.16094 1.21108 0.81644 0.78012 0.90871 1.90668 1.53869 1.57637 1.44203 1.22326 0.84646 1.01474 0.93654 1.88076 1.26075 1.82058 1.35062 1.21593 0.90364 0.99459 0.86519 1.19733 0.95344 0.93464 1.00714 1.21519 0.92741 0.99804 0.98015 1.21465 0.97236 0.95870 0.98317 1.21398 0.99512 0.93159 0.98758 1.21062 0.95018 0.87477 1.04347 1.98366 1.94943 1.22162 1.88924 1.21110 0.95383 0.96951 0.98529 0.86437 0.88272 0.86264 0.90184 0.87384 0.93184 0.96746 0.92239 0.87727 0.86776 0.89642 0.89742 0.83955 0.82239 0.83065 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 14.32 67.79 0.97 -2.29 16 2 C -0.18 -4.08 9.74 25.65 0.25 -3.83 16 3 C 0.13 3.59 5.65 85.64 0.48 4.08 16 4 N -0.59 -23.78 2.44 -830.49 -2.03 -25.81 16 5 C 0.23 11.23 4.23 85.63 0.36 11.59 16 6 C -0.54 -31.69 9.94 25.60 0.25 -31.44 16 7 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 8 C 0.01 0.75 5.47 84.65 0.46 1.21 16 9 N -0.94 -60.00 13.96 21.45 0.30 -59.70 16 10 Si 0.94 44.96 27.47 68.60 1.88 46.84 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.24 -10.17 6.54 99.48 0.65 -9.51 16 14 C 0.50 20.50 7.75 87.66 0.68 21.17 16 15 O -0.58 -31.43 16.08 16.00 0.26 -31.17 16 16 C 0.06 1.57 4.97 71.24 0.35 1.92 16 17 O -0.39 -12.02 9.86 -129.94 -1.28 -13.30 16 18 C 0.10 1.89 6.06 71.24 0.43 2.32 16 19 C -0.09 -1.98 5.51 -19.87 -0.11 -2.09 16 20 C -0.10 -1.99 9.70 22.27 0.22 -1.78 16 21 C -0.11 -1.85 10.05 22.26 0.22 -1.62 16 22 C -0.11 -1.93 9.83 22.29 0.22 -1.71 16 23 C -0.05 -1.08 6.32 22.32 0.14 -0.94 16 24 Cl -0.07 -1.41 28.96 -2.72 -0.08 -1.49 16 25 C -0.10 -2.17 9.49 22.29 0.21 -1.96 16 26 H 0.12 1.79 8.06 -2.91 -0.02 1.77 16 27 H 0.10 1.96 7.84 -2.91 -0.02 1.93 16 28 H 0.12 2.32 7.83 -2.91 -0.02 2.29 16 29 H 0.08 2.42 7.72 -2.39 -0.02 2.41 16 30 H 0.11 2.27 6.44 -2.39 -0.02 2.26 16 31 H 0.05 2.27 7.13 -2.38 -0.02 2.25 16 32 H 0.01 0.78 6.85 -2.39 -0.02 0.76 16 33 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 34 H 0.11 2.23 7.40 -2.39 -0.02 2.21 16 35 H 0.11 2.16 7.77 -2.39 -0.02 2.14 16 36 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16 37 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 38 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -82.84 370.35 5.17 -77.66 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.97 Total: 12.33 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.15 Total: -5.36 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.73 Total: -85.51 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -1.02 Total: -44.47 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -82.84 5.17 -77.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457825085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.235 kcal (2) G-P(sol) polarization free energy of solvation -82.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds