Wall clock time and date at job start Tue Mar 31 2020 13:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47247 * 2 1 4 4 C 1.50699 * 109.47048 * 240.00225 * 2 1 3 5 5 H 1.07997 * 119.99766 * 241.35146 * 4 2 1 6 6 C 1.37877 * 119.99991 * 61.34570 * 4 2 1 7 7 N 1.31521 * 120.00200 * 193.97795 * 6 4 2 8 8 Si 1.86806 * 120.00035 * 13.97959 * 6 4 2 9 9 H 1.48499 * 109.46889 * 84.54944 * 8 6 4 10 10 H 1.48502 * 109.46739 * 204.54810 * 8 6 4 11 11 H 1.48498 * 109.46794 * 324.54611 * 8 6 4 12 12 C 1.53001 * 109.47157 * 120.00045 * 2 1 3 13 13 N 1.46495 * 109.46980 * 300.00189 * 12 2 1 14 14 C 1.34780 * 119.99679 * 180.02562 * 13 12 2 15 15 O 1.21584 * 120.00053 * 359.97438 * 14 13 12 16 16 C 1.47540 * 119.99906 * 179.97438 * 14 13 12 17 17 C 1.39533 * 120.04549 * 359.97438 * 16 14 13 18 18 C 1.37889 * 120.17101 * 180.02562 * 17 16 14 19 19 Cl 1.73597 * 120.02668 * 179.83452 * 18 17 16 20 20 C 1.38733 * 119.94710 * 359.84817 * 18 17 16 21 21 C 1.37659 * 120.31088 * 359.97438 * 20 18 17 22 22 C 1.38865 * 120.88965 * 0.35548 * 21 20 18 23 23 O 1.36130 * 111.39658 * 179.09490 * 22 21 20 24 24 C 1.43777 * 109.13138 * 18.72160 * 23 22 21 25 25 C 1.51678 * 132.11557 * 180.34985 * 21 20 18 26 26 H 1.09005 * 109.46761 * 309.36627 * 1 2 3 27 27 H 1.09001 * 109.46845 * 69.36057 * 1 2 3 28 28 H 1.08997 * 109.46992 * 189.36661 * 1 2 3 29 29 H 1.08998 * 109.47169 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47491 * 300.00272 * 3 2 1 31 31 H 1.09000 * 109.46881 * 60.00199 * 3 2 1 32 32 H 0.96991 * 120.00437 * 180.02562 * 7 6 4 33 33 H 1.08992 * 109.47094 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.46646 * 59.99752 * 12 2 1 35 35 H 0.96998 * 120.00318 * 359.97438 * 13 12 2 36 36 H 1.07998 * 119.91233 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.84300 * 179.97438 * 20 18 17 38 38 H 1.09000 * 110.75177 * 214.11440 * 24 23 22 39 39 H 1.09000 * 110.75356 * 90.93613 * 24 23 22 40 40 H 1.09007 * 110.94351 * 46.47072 * 25 21 20 41 41 H 1.09000 * 110.98250 * 282.78185 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6351 -1.6010 -1.1315 6 6 1.7223 -0.2233 -2.4825 7 7 1.9157 -0.9725 -3.5461 8 14 1.0276 1.5008 -2.6684 9 1 2.1418 2.4817 -2.7084 10 1 0.2470 1.5866 -3.9287 11 1 0.1418 1.8043 -1.5158 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5768 -1.4794 3.7810 16 6 1.3864 0.2049 4.8741 17 6 0.5845 1.3397 4.7473 18 6 0.1243 1.9923 5.8714 19 17 -0.8695 3.4064 5.7092 20 6 0.4564 1.5181 7.1322 21 6 1.2439 0.3972 7.2676 22 6 1.7259 -0.2745 6.1519 23 8 2.4963 -1.3390 6.5074 24 6 2.2153 -1.6887 7.8734 25 6 1.7559 -0.3450 8.4873 26 1 -0.3633 0.6519 0.7945 27 1 -0.3633 0.3622 -0.9617 28 1 -0.3633 -1.0139 0.1672 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6980 -0.6297 -4.4269 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.9943 0.7582 2.3564 36 1 0.3237 1.7079 3.7660 37 1 0.0954 2.0308 8.0115 38 1 3.1137 -2.0537 8.3713 39 1 1.4180 -2.4301 7.9262 40 1 0.9570 -0.5008 9.2124 41 1 2.5944 0.1827 8.9418 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457988403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:18 Heat of formation + Delta-G solvation = -53.863503 kcal Electronic energy + Delta-G solvation = -25022.821282 eV Core-core repulsion = 21314.841311 eV Total energy + Delta-G solvation = -3707.979971 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.37345 -40.72223 -38.82683 -38.36844 -37.15901 -35.09352 -33.97593 -33.30680 -31.26124 -30.35150 -28.05675 -27.72355 -26.99134 -25.14256 -23.77375 -23.16200 -21.48157 -20.99482 -18.92961 -18.47755 -18.07107 -17.89968 -17.28753 -17.09072 -16.50684 -16.40540 -16.31375 -15.32603 -15.03612 -14.90353 -14.77871 -14.57281 -14.32171 -14.14721 -14.01022 -13.85083 -13.75972 -13.44762 -12.99814 -12.83540 -12.77048 -12.47806 -12.39992 -12.17645 -12.02204 -11.96506 -11.78243 -11.50839 -11.14224 -10.96488 -10.62302 -10.40203 -10.27353 -9.99096 -9.21606 -8.30287 -6.32362 -0.39412 -0.03603 1.02426 1.37051 1.38150 1.51340 1.67600 2.13575 2.21679 2.34901 2.54890 3.05604 3.26824 3.44340 3.66288 3.81561 3.98188 4.03447 4.13916 4.17578 4.30047 4.38017 4.43003 4.57915 4.72294 4.73869 4.78693 4.80490 4.84726 4.89477 4.92370 4.96473 5.03769 5.06163 5.14666 5.24810 5.37187 5.49887 5.70432 5.78023 5.95821 6.29198 6.53459 6.71952 7.19069 7.32485 8.86976 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.003551 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.261649 B = 7882.655542 C = 9387.703621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.519 4.519 5 H 0.027 0.973 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.944 3.056 9 H -0.281 1.281 10 H -0.314 1.314 11 H -0.202 1.202 12 C 0.158 3.842 13 N -0.705 5.705 14 C 0.549 3.451 15 O -0.575 6.575 16 C -0.165 4.165 17 C -0.043 4.043 18 C -0.073 4.073 19 Cl -0.049 7.049 20 C -0.025 4.025 21 C -0.169 4.169 22 C 0.150 3.850 23 O -0.311 6.311 24 C 0.031 3.969 25 C -0.096 4.096 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.265 0.735 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.409 0.591 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 9.977 29.224 31.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.557 4.557 5 H 0.045 0.955 6 C -0.180 4.180 7 N -0.585 5.585 8 Si 0.773 3.227 9 H -0.208 1.208 10 H -0.244 1.244 11 H -0.126 1.126 12 C 0.034 3.966 13 N -0.358 5.358 14 C 0.338 3.662 15 O -0.455 6.455 16 C -0.170 4.170 17 C -0.062 4.062 18 C -0.100 4.100 19 Cl -0.020 7.020 20 C -0.044 4.044 21 C -0.170 4.170 22 C 0.101 3.899 23 O -0.224 6.224 24 C -0.043 4.043 25 C -0.132 4.132 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.248 0.752 36 H 0.174 0.826 37 H 0.191 0.809 38 H 0.148 0.852 39 H 0.107 0.893 40 H 0.146 0.854 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.365 9.221 28.971 31.063 hybrid contribution -0.054 0.428 -1.254 1.326 sum -6.420 9.649 27.717 30.043 Atomic orbital electron populations 1.22231 0.95933 1.00702 1.01024 1.18661 0.93897 0.93143 0.91632 1.22307 1.01091 0.96739 1.00349 1.21006 1.33032 1.11118 0.90552 0.95473 1.25867 0.95332 1.01691 0.95129 1.70112 1.50663 1.38332 0.99427 0.86339 0.79487 0.79798 0.77076 1.20822 1.24369 1.12602 1.21086 0.97466 0.95066 0.82985 1.45952 1.53000 1.32002 1.04868 1.18459 0.80076 0.83832 0.83876 1.90792 1.39693 1.27829 1.87235 1.19123 1.06779 1.00686 0.90366 1.21048 0.93527 0.91686 0.99967 1.20524 1.01626 0.93602 0.94282 1.98392 1.67819 1.37678 1.98115 1.20594 0.93578 0.93147 0.97043 1.21039 1.02585 0.98170 0.95203 1.19931 0.88820 0.87710 0.93393 1.87095 1.57039 1.45740 1.32491 1.24350 1.04194 0.97982 0.77727 1.21935 1.03441 0.92977 0.94861 0.91600 0.93341 0.94032 0.93423 0.94408 0.90881 0.92628 0.93795 0.93947 0.75245 0.82606 0.80886 0.85173 0.89343 0.85381 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 7.53 71.98 0.54 -4.89 16 2 C 0.03 1.20 0.50 -52.93 -0.03 1.18 16 3 C -0.15 -5.62 7.52 71.98 0.54 -5.08 16 4 C -0.52 -29.08 8.62 25.60 0.22 -28.86 16 5 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 6 C 0.02 0.99 5.32 84.65 0.45 1.44 16 7 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 8 Si 0.94 42.84 22.79 68.60 1.56 44.41 16 9 H -0.28 -12.50 7.10 99.48 0.71 -11.79 16 10 H -0.31 -14.68 7.11 99.48 0.71 -13.98 16 11 H -0.20 -7.70 4.65 99.48 0.46 -7.24 16 12 C 0.16 6.59 4.49 86.38 0.39 6.98 16 13 N -0.71 -23.58 4.95 -466.28 -2.31 -25.89 16 14 C 0.55 19.67 7.76 86.70 0.67 20.34 16 15 O -0.57 -25.82 15.86 11.02 0.17 -25.64 16 16 C -0.17 -4.58 5.89 -19.93 -0.12 -4.69 16 17 C -0.04 -0.89 9.30 22.50 0.21 -0.68 16 18 C -0.07 -1.24 6.32 22.31 0.14 -1.09 16 19 Cl -0.05 -0.73 28.96 -2.72 -0.08 -0.81 16 20 C -0.03 -0.34 9.81 22.25 0.22 -0.12 16 21 C -0.17 -2.78 6.27 -19.54 -0.12 -2.91 16 22 C 0.15 3.85 6.73 23.00 0.15 4.00 16 23 O -0.31 -8.63 10.14 -80.03 -0.81 -9.44 16 24 C 0.03 0.45 8.00 72.57 0.58 1.03 16 25 C -0.10 -0.88 7.12 30.74 0.22 -0.66 16 26 H 0.07 1.94 7.13 -2.38 -0.02 1.93 16 27 H 0.05 1.95 4.30 -2.39 -0.01 1.94 16 28 H 0.04 1.63 8.12 -2.39 -0.02 1.61 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.04 1.48 2.25 -2.39 -0.01 1.47 16 31 H 0.07 2.13 6.86 -2.39 -0.02 2.11 16 32 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.41 10.90 4.27 -92.71 -0.40 10.51 16 36 H 0.16 2.73 6.37 -2.91 -0.02 2.71 16 37 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.13 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.13 0.42 8.14 -2.38 -0.02 0.40 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -77.61 337.35 3.35 -74.26 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.44 Total: 16.07 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 4.07 Total: -14.03 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.01 Total: -84.81 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.64 Total: -35.08 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.56 Total: 44.41 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -77.61 3.35 -74.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457988403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.397 kcal (2) G-P(sol) polarization free energy of solvation -77.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds