Wall clock time and date at job start Tue Mar 31 2020 13:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47059 * 2 1 4 4 C 1.50698 * 109.47422 * 240.00175 * 2 1 3 5 5 H 1.07997 * 120.00541 * 240.00429 * 4 2 1 6 6 C 1.37877 * 119.99672 * 59.99218 * 4 2 1 7 7 N 1.31514 * 120.00161 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99832 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46943 * 60.00769 * 8 6 4 10 10 H 1.48501 * 109.47167 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47525 * 300.00787 * 8 6 4 12 12 C 1.53006 * 109.47233 * 119.99900 * 2 1 3 13 13 N 1.46498 * 109.47335 * 300.00227 * 12 2 1 14 14 C 1.34776 * 119.99933 * 180.02562 * 13 12 2 15 15 O 1.21284 * 120.00151 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99740 * 180.02562 * 14 13 12 17 17 H 1.08992 * 110.83506 * 56.28659 * 16 14 13 18 18 C 1.54714 * 110.96890 * 292.54711 * 16 14 13 19 19 O 1.43769 * 102.78906 * 216.51853 * 18 16 14 20 20 C 1.36162 * 109.24438 * 27.69663 * 19 18 16 21 21 C 1.39281 * 129.86002 * 161.39343 * 20 19 18 22 22 C 1.37935 * 120.25484 * 179.34355 * 21 20 19 23 23 C 1.38382 * 120.33895 * 0.04267 * 22 21 20 24 24 Cl 1.73598 * 120.13192 * 180.44822 * 23 22 21 25 25 C 1.38455 * 119.73682 * 0.17391 * 23 22 21 26 26 C 1.37740 * 119.96864 * 359.90711 * 25 23 22 27 27 H 1.09001 * 109.47317 * 299.99452 * 1 2 3 28 28 H 1.08997 * 109.47222 * 59.99799 * 1 2 3 29 29 H 1.09006 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47091 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47268 * 300.00173 * 3 2 1 32 32 H 1.09001 * 109.46609 * 60.00114 * 3 2 1 33 33 H 0.97007 * 119.99897 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46758 * 179.97438 * 12 2 1 35 35 H 1.09003 * 109.46920 * 60.00612 * 12 2 1 36 36 H 0.96999 * 119.99642 * 359.97438 * 13 12 2 37 37 H 1.08997 * 110.74888 * 334.84615 * 18 16 14 38 38 H 1.09003 * 110.74108 * 98.01076 * 18 16 14 39 39 H 1.07994 * 119.87604 * 359.36663 * 21 20 19 40 40 H 1.08001 * 119.82686 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.01295 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6033 8 14 2.3213 -1.1202 -4.0079 9 1 1.8257 -2.5201 -4.0077 10 1 1.8268 -0.4198 -5.2204 11 1 3.8063 -1.1208 -4.0082 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0307 2.4455 14 6 1.8778 -0.4909 3.6695 15 8 2.5751 -1.4770 3.7808 16 6 1.3749 0.2192 4.9000 17 1 0.2873 0.2887 4.8901 18 6 2.0175 1.6203 5.0321 19 8 2.1925 1.7575 6.4525 20 6 2.3369 0.5229 7.0083 21 6 2.8625 0.1566 8.2450 22 6 2.9017 -1.1708 8.6179 23 6 2.4204 -2.1503 7.7671 24 17 2.4617 -3.8183 8.2466 25 6 1.9006 -1.7943 6.5342 26 6 1.8626 -0.4692 6.1602 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7092 1.1618 -3.4844 34 1 3.1301 -0.7216 1.2490 35 1 1.6768 -1.7490 1.2492 36 1 0.9943 0.7581 2.3564 37 1 2.9789 1.6541 4.5196 38 1 1.3486 2.3897 4.6464 39 1 3.2404 0.9148 8.9148 40 1 3.3103 -1.4471 9.5787 41 1 1.5242 -2.5551 5.8665 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457995803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:24 Heat of formation + Delta-G solvation = -53.589272 kcal Electronic energy + Delta-G solvation = -24831.436297 eV Core-core repulsion = 21123.468217 eV Total energy + Delta-G solvation = -3707.968080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62778 -39.12625 -37.95111 -36.47725 -36.27746 -33.47492 -32.94606 -31.00649 -30.10387 -29.52128 -25.85438 -25.80890 -25.16783 -24.02173 -22.79277 -22.21789 -20.11711 -18.89067 -17.74286 -17.56080 -17.02586 -16.31190 -15.94099 -15.39360 -15.16427 -14.97914 -14.58830 -14.21425 -13.97245 -13.59092 -13.50309 -13.20814 -13.02647 -12.87072 -12.49432 -12.27794 -12.13621 -12.02768 -11.47222 -11.44266 -11.25485 -10.90803 -10.89714 -10.77849 -10.74359 -10.46367 -10.26394 -9.72201 -9.71820 -9.38036 -9.18070 -8.87155 -8.57583 -8.40669 -8.29567 -6.07917 -4.18325 0.89856 1.04921 1.98664 2.75455 2.94627 3.25242 3.26566 3.31126 3.35012 3.63287 4.00313 4.30494 4.35424 4.60625 4.73624 4.82401 4.91033 5.13609 5.19063 5.20337 5.31754 5.42310 5.65711 5.75371 6.00747 6.10226 6.12556 6.19016 6.22931 6.41582 6.66420 6.72859 6.80829 6.83381 6.88870 6.93192 7.26768 7.47804 7.63147 7.87602 7.93638 8.06702 8.30982 8.49865 8.82031 9.47978 10.93455 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021023 B = 0.002786 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.576214 B =10048.141470 C =11006.081179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.712 5.712 14 C 0.513 3.487 15 O -0.535 6.535 16 C -0.103 4.103 17 H 0.123 0.877 18 C 0.064 3.936 19 O -0.297 6.297 20 C 0.114 3.886 21 C -0.132 4.132 22 C -0.073 4.073 23 C -0.068 4.068 24 Cl -0.069 7.069 25 C -0.029 4.029 26 C -0.138 4.138 27 H 0.006 0.994 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.005 0.995 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.398 0.602 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 1.282 19.841 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.009 3.991 13 N -0.363 5.363 14 C 0.297 3.703 15 O -0.412 6.412 16 C -0.125 4.125 17 H 0.141 0.859 18 C -0.011 4.011 19 O -0.210 6.210 20 C 0.068 3.932 21 C -0.151 4.151 22 C -0.092 4.092 23 C -0.095 4.095 24 Cl -0.040 7.040 25 C -0.047 4.047 26 C -0.139 4.139 27 H 0.025 0.975 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.148 0.761 19.862 19.877 hybrid contribution -0.022 -0.330 -1.131 1.178 sum 0.126 0.432 18.731 18.736 Atomic orbital electron populations 1.21841 0.97728 0.99228 1.00105 1.18350 0.92799 0.92746 0.90484 1.21842 0.98626 0.98324 1.00108 1.20941 1.31688 1.12205 0.89890 0.92471 1.24870 0.94784 0.94898 0.98863 1.69786 1.36545 1.22681 1.23422 0.86628 0.79268 0.79817 0.82130 1.20245 1.21291 1.20249 1.21777 0.98251 0.95880 0.83199 1.46328 1.52369 1.31738 1.05849 1.19909 0.81248 0.85027 0.84146 1.90710 1.37818 1.26142 1.86551 1.21619 1.03185 0.95326 0.92338 0.85881 1.23864 1.02103 0.95555 0.79573 1.86852 1.87842 1.25059 1.21266 1.19607 0.94856 0.84171 0.94550 1.20101 1.03742 0.95945 0.95288 1.20732 0.98320 0.90729 0.99401 1.20620 1.06987 0.85688 0.96160 1.98362 1.97431 1.16578 1.91619 1.20180 0.95843 0.95054 0.93667 1.20098 1.04256 0.93694 0.95895 0.97545 0.89522 0.95404 0.95396 0.89506 0.97562 0.92888 0.92556 0.92533 0.76635 0.89528 0.86240 0.84415 0.84133 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 4 C -0.51 -12.95 8.01 -34.44 -0.28 -13.23 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -22.99 9.35 55.43 0.52 -22.48 16 8 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 C 0.13 2.62 4.50 -4.04 -0.02 2.60 16 13 N -0.71 -11.42 4.96 -60.29 -0.30 -11.72 16 14 C 0.51 8.07 7.06 -10.99 -0.08 8.00 16 15 O -0.54 -10.42 15.16 5.55 0.08 -10.33 16 16 C -0.10 -1.24 3.52 -91.56 -0.32 -1.56 16 17 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 18 C 0.06 0.67 7.54 38.06 0.29 0.96 16 19 O -0.30 -3.51 11.10 -20.26 -0.22 -3.73 16 20 C 0.11 1.39 7.04 -38.96 -0.27 1.11 16 21 C -0.13 -1.35 10.06 -39.30 -0.40 -1.75 16 22 C -0.07 -0.73 9.81 -39.64 -0.39 -1.11 16 23 C -0.07 -0.80 6.33 -39.45 -0.25 -1.05 16 24 Cl -0.07 -0.76 28.97 -51.86 -1.50 -2.26 16 25 C -0.03 -0.38 8.86 -39.68 -0.35 -0.73 16 26 C -0.14 -1.80 5.40 -104.10 -0.56 -2.37 16 27 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 32 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.40 5.58 6.16 -40.82 -0.25 5.33 16 37 H 0.09 0.95 7.91 -51.93 -0.41 0.54 16 38 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 1.93 7.80 -52.49 -0.41 1.52 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -28.39 349.08 -8.72 -37.11 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.34 Total: 4.16 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.20 Total: -11.33 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.22 Total: -34.19 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.14 Total: -14.07 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.39 -8.72 -37.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.478 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds