Wall clock time and date at job start Tue Mar 31 2020 13:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47059 * 2 1 4 4 C 1.50698 * 109.47422 * 240.00175 * 2 1 3 5 5 H 1.07997 * 120.00541 * 240.00429 * 4 2 1 6 6 C 1.37877 * 119.99672 * 59.99218 * 4 2 1 7 7 N 1.31514 * 120.00161 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99832 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46943 * 60.00769 * 8 6 4 10 10 H 1.48501 * 109.47167 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47525 * 300.00787 * 8 6 4 12 12 C 1.53006 * 109.47233 * 119.99900 * 2 1 3 13 13 N 1.46498 * 109.47335 * 300.00227 * 12 2 1 14 14 C 1.34776 * 119.99933 * 180.02562 * 13 12 2 15 15 O 1.21284 * 120.00151 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99740 * 180.02562 * 14 13 12 17 17 H 1.08992 * 110.83506 * 56.28659 * 16 14 13 18 18 C 1.54714 * 110.96890 * 292.54711 * 16 14 13 19 19 O 1.43769 * 102.78906 * 216.51853 * 18 16 14 20 20 C 1.36162 * 109.24438 * 27.69663 * 19 18 16 21 21 C 1.39281 * 129.86002 * 161.39343 * 20 19 18 22 22 C 1.37935 * 120.25484 * 179.34355 * 21 20 19 23 23 C 1.38382 * 120.33895 * 0.04267 * 22 21 20 24 24 Cl 1.73598 * 120.13192 * 180.44822 * 23 22 21 25 25 C 1.38455 * 119.73682 * 0.17391 * 23 22 21 26 26 C 1.37740 * 119.96864 * 359.90711 * 25 23 22 27 27 H 1.09001 * 109.47317 * 299.99452 * 1 2 3 28 28 H 1.08997 * 109.47222 * 59.99799 * 1 2 3 29 29 H 1.09006 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47091 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47268 * 300.00173 * 3 2 1 32 32 H 1.09001 * 109.46609 * 60.00114 * 3 2 1 33 33 H 0.97007 * 119.99897 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46758 * 179.97438 * 12 2 1 35 35 H 1.09003 * 109.46920 * 60.00612 * 12 2 1 36 36 H 0.96999 * 119.99642 * 359.97438 * 13 12 2 37 37 H 1.08997 * 110.74888 * 334.84615 * 18 16 14 38 38 H 1.09003 * 110.74108 * 98.01076 * 18 16 14 39 39 H 1.07994 * 119.87604 * 359.36663 * 21 20 19 40 40 H 1.08001 * 119.82686 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.01295 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6033 8 14 2.3213 -1.1202 -4.0079 9 1 1.8257 -2.5201 -4.0077 10 1 1.8268 -0.4198 -5.2204 11 1 3.8063 -1.1208 -4.0082 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0307 2.4455 14 6 1.8778 -0.4909 3.6695 15 8 2.5751 -1.4770 3.7808 16 6 1.3749 0.2192 4.9000 17 1 0.2873 0.2887 4.8901 18 6 2.0175 1.6203 5.0321 19 8 2.1925 1.7575 6.4525 20 6 2.3369 0.5229 7.0083 21 6 2.8625 0.1566 8.2450 22 6 2.9017 -1.1708 8.6179 23 6 2.4204 -2.1503 7.7671 24 17 2.4617 -3.8183 8.2466 25 6 1.9006 -1.7943 6.5342 26 6 1.8626 -0.4692 6.1602 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7092 1.1618 -3.4844 34 1 3.1301 -0.7216 1.2490 35 1 1.6768 -1.7490 1.2492 36 1 0.9943 0.7581 2.3564 37 1 2.9789 1.6541 4.5196 38 1 1.3486 2.3897 4.6464 39 1 3.2404 0.9148 8.9148 40 1 3.3103 -1.4471 9.5787 41 1 1.5242 -2.5551 5.8665 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457995803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:24 Heat of formation + Delta-G solvation = -69.301300 kcal Electronic energy + Delta-G solvation = -24832.117622 eV Core-core repulsion = 21123.468217 eV Total energy + Delta-G solvation = -3708.649404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.54820 -40.44194 -38.80723 -38.12584 -37.15279 -35.05907 -33.98839 -32.68839 -31.01465 -30.43688 -27.54966 -27.50576 -26.88982 -25.00343 -23.79211 -23.14291 -21.37287 -20.61210 -18.76074 -18.59637 -17.95680 -17.72498 -17.18732 -16.72083 -16.60332 -16.27124 -16.09169 -15.20941 -14.92777 -14.83728 -14.71534 -14.47772 -14.36235 -14.11809 -13.96213 -13.36765 -13.28388 -13.10988 -13.03336 -12.85634 -12.66185 -12.63636 -12.34312 -12.24310 -12.13842 -11.75614 -11.59419 -11.47825 -11.28600 -10.91819 -10.69652 -10.39884 -10.07668 -9.98640 -9.17427 -8.03046 -6.18528 0.02941 0.16967 1.11457 1.43115 1.44985 1.50911 1.52608 2.08127 2.17677 2.45741 2.60783 3.07740 3.20839 3.42615 3.71430 3.78096 3.97247 4.11439 4.26783 4.37556 4.43640 4.50392 4.54577 4.58655 4.72515 4.84239 4.88469 4.99921 5.06745 5.10830 5.16605 5.20474 5.21956 5.33401 5.34978 5.56492 5.67269 5.68702 5.96222 6.17240 6.22432 6.43690 6.59471 6.85699 7.22908 7.49360 8.95341 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021023 B = 0.002786 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.576214 B =10048.141470 C =11006.081179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.053 3.947 3 C -0.122 4.122 4 C -0.532 4.532 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.941 3.059 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.148 3.852 13 N -0.703 5.703 14 C 0.516 3.484 15 O -0.576 6.576 16 C -0.095 4.095 17 H 0.150 0.850 18 C 0.066 3.934 19 O -0.299 6.299 20 C 0.102 3.898 21 C -0.127 4.127 22 C -0.066 4.066 23 C -0.077 4.077 24 Cl -0.068 7.068 25 C -0.049 4.049 26 C -0.159 4.159 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.260 0.740 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.412 0.588 37 H 0.078 0.922 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 2.689 21.661 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.052 3.948 3 C -0.180 4.180 4 C -0.571 4.571 5 H 0.061 0.939 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.768 3.232 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.024 3.976 13 N -0.355 5.355 14 C 0.302 3.698 15 O -0.455 6.455 16 C -0.116 4.116 17 H 0.168 0.832 18 C -0.009 4.009 19 O -0.213 6.213 20 C 0.057 3.943 21 C -0.145 4.145 22 C -0.084 4.084 23 C -0.104 4.104 24 Cl -0.039 7.039 25 C -0.068 4.068 26 C -0.161 4.161 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.249 0.751 37 H 0.097 0.903 38 H 0.174 0.826 39 H 0.184 0.816 40 H 0.188 0.812 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.120 2.192 21.691 21.802 hybrid contribution 0.084 -0.810 -1.643 1.834 sum -0.036 1.382 20.048 20.095 Atomic orbital electron populations 1.21686 0.97044 0.98646 1.00603 1.18338 0.93261 0.93113 0.90069 1.21684 0.97928 0.97688 1.00677 1.21270 1.31819 1.12233 0.91751 0.93914 1.25403 0.95132 0.95571 1.00822 1.69887 1.36869 1.23161 1.23663 0.85881 0.78636 0.78853 0.79814 1.20379 1.20800 1.20333 1.21280 0.97032 0.95088 0.84150 1.46088 1.52544 1.31927 1.04941 1.20531 0.80104 0.84396 0.84816 1.90697 1.39587 1.28096 1.87155 1.21638 1.04693 0.95691 0.89600 0.83209 1.24052 1.02439 0.95300 0.79111 1.86850 1.87885 1.24762 1.21755 1.19854 0.95198 0.84052 0.95218 1.20496 1.02463 0.96655 0.94911 1.21082 0.97080 0.90199 1.00037 1.20789 1.07227 0.86243 0.96151 1.98359 1.97432 1.16624 1.91494 1.20166 0.97204 0.95066 0.94340 1.20269 1.05231 0.93897 0.96698 0.94011 0.91931 0.96487 0.96357 0.91958 0.93855 0.93006 0.94322 0.94402 0.75056 0.90346 0.82556 0.81603 0.81222 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.07 8.08 71.98 0.58 -4.49 16 4 C -0.53 -27.52 8.01 25.60 0.21 -27.32 16 5 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 6 C 0.03 1.59 5.15 84.65 0.44 2.02 16 7 N -0.90 -46.70 9.35 21.45 0.20 -46.50 16 8 Si 0.94 41.99 29.54 68.60 2.03 44.02 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.15 5.96 4.50 86.38 0.39 6.35 16 13 N -0.70 -21.59 4.96 -463.05 -2.30 -23.88 16 14 C 0.52 15.80 7.06 87.66 0.62 16.41 16 15 O -0.58 -22.76 15.16 -3.04 -0.05 -22.81 16 16 C -0.10 -2.10 3.52 -11.40 -0.04 -2.14 16 17 H 0.15 2.48 8.14 -2.39 -0.02 2.46 16 18 C 0.07 1.18 7.54 72.57 0.55 1.72 16 19 O -0.30 -6.22 11.10 -95.40 -1.06 -7.28 16 20 C 0.10 2.27 7.04 22.67 0.16 2.43 16 21 C -0.13 -2.24 10.06 22.45 0.23 -2.01 16 22 C -0.07 -1.15 9.81 22.23 0.22 -0.93 16 23 C -0.08 -1.75 6.33 22.36 0.14 -1.61 16 24 Cl -0.07 -1.46 28.97 -2.72 -0.08 -1.54 16 25 C -0.05 -1.29 8.86 22.20 0.20 -1.10 16 26 C -0.16 -3.99 5.40 -19.53 -0.11 -4.10 16 27 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 28 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 29 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 2.93 6.07 -2.39 -0.01 2.92 16 32 H 0.04 1.43 6.86 -2.39 -0.02 1.42 16 33 H 0.26 13.13 8.31 -92.70 -0.77 12.36 16 34 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.41 10.32 6.16 -92.71 -0.57 9.75 16 37 H 0.08 1.54 7.91 -2.39 -0.02 1.52 16 38 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 40 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.12 3.53 7.80 -2.91 -0.02 3.50 16 Total: -1.00 -62.66 349.08 3.36 -59.30 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.49 Total: 15.70 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 4.13 Total: -17.01 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -2.10 Total: -70.38 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -1.11 Total: -30.09 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -62.66 3.36 -59.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.004 kcal (2) G-P(sol) polarization free energy of solvation -62.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds