Wall clock time and date at job start Tue Mar 31 2020 14:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 N 1.39870 * 125.46561 * 60.02345 * 4 2 1 6 6 C 1.30243 * 110.08681 * 179.97438 * 5 4 2 7 7 C 1.45924 * 107.78591 * 0.02562 * 6 5 4 8 8 C 1.39949 * 134.03260 * 180.02562 * 7 6 5 9 9 C 1.36472 * 119.63262 * 179.97438 * 8 7 6 10 10 S 1.76195 * 119.68170 * 180.02562 * 9 8 7 11 11 O 1.42102 * 106.40258 * 203.54011 * 10 9 8 12 12 O 1.42103 * 106.40436 * 336.46125 * 10 9 8 13 13 N 1.65599 * 107.22177 * 90.00219 * 10 9 8 14 14 C 1.46497 * 119.99760 * 64.99336 * 13 10 9 15 15 C 1.50705 * 109.47203 * 165.00376 * 14 13 10 16 16 H 1.08008 * 119.99708 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00421 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99760 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47203 * 60.00043 * 19 17 15 21 21 H 1.48500 * 109.47104 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47032 * 299.99816 * 19 17 15 23 23 C 1.38966 * 120.63270 * 359.97438 * 9 8 7 24 24 C 1.36593 * 120.80885 * 0.04635 * 23 9 8 25 25 C 1.37045 * 125.45838 * 239.71725 * 4 2 1 26 26 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 29 29 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 30 30 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 31 31 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 33 33 H 1.08007 * 126.10273 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.18549 * 359.97438 * 8 7 6 35 35 H 0.97002 * 120.00294 * 245.00343 * 13 10 9 36 36 H 1.08996 * 109.47640 * 285.00144 * 14 13 10 37 37 H 1.09004 * 109.47083 * 45.00764 * 14 13 10 38 38 H 0.97005 * 119.99561 * 179.97438 * 18 17 15 39 39 H 1.08000 * 119.59152 * 180.02562 * 23 9 8 40 40 H 1.08001 * 120.06917 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 7 1.7521 -0.3132 -2.5165 6 6 2.3338 -1.1352 -3.3426 7 6 3.0408 -2.1366 -2.5510 8 6 3.8281 -3.2493 -2.8685 9 6 4.3624 -4.0060 -1.8664 10 16 5.3543 -5.4067 -2.2647 11 8 5.2981 -6.2715 -1.1386 12 8 4.9736 -5.8089 -3.5734 13 7 6.9214 -4.8826 -2.3739 14 6 7.6050 -4.3647 -1.1862 15 6 9.0882 -4.3045 -1.4465 16 1 9.4821 -4.6201 -2.4014 17 6 9.9422 -3.8466 -0.4658 18 7 9.4625 -3.4629 0.6971 19 14 11.7805 -3.7714 -0.7887 20 1 12.0442 -2.8736 -1.9417 21 1 12.4736 -3.2477 0.4157 22 1 12.2852 -5.1336 -1.0965 23 6 4.1326 -3.6817 -0.5347 24 6 3.3674 -2.6009 -0.1999 25 6 2.8140 -1.8063 -1.2010 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9562 0.8901 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 2.2990 -1.0846 -4.4209 34 1 4.0117 -3.5077 -3.9009 35 1 7.3867 -4.9185 -3.2243 36 1 7.2348 -3.3646 -0.9611 37 1 7.4112 -5.0232 -0.3394 38 1 10.0635 -3.1411 1.3872 39 1 4.5641 -4.2919 0.2449 40 1 3.1962 -2.3600 0.8389 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487371869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:41 Heat of formation + Delta-G solvation = 5.691618 kcal Electronic energy + Delta-G solvation = -24842.931427 eV Core-core repulsion = 21171.870417 eV Total energy + Delta-G solvation = -3671.061010 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44014 -37.51815 -36.68134 -35.64507 -35.28538 -34.59881 -32.14467 -31.89794 -30.03431 -29.15599 -27.61097 -26.72699 -23.41657 -23.24520 -22.52384 -22.42976 -19.84976 -19.00806 -17.67830 -17.60099 -17.12492 -16.11803 -15.83996 -15.38259 -15.34662 -14.93126 -14.80847 -14.49165 -14.07387 -13.74591 -13.47564 -13.40569 -13.21898 -12.66793 -12.57771 -12.40085 -12.14265 -12.02816 -11.79534 -11.73600 -11.63495 -11.55184 -11.47981 -11.28343 -10.93245 -10.89087 -10.77299 -10.51336 -10.25801 -10.10605 -9.44700 -8.90565 -8.80639 -8.23657 -8.14064 -6.17938 -4.22257 0.85134 0.98394 1.18247 2.13995 2.39346 3.26948 3.31409 3.33483 3.45863 3.83228 4.09637 4.29319 4.34683 4.37316 4.55715 4.59652 4.72141 4.81221 4.86836 5.08976 5.19255 5.20261 5.26345 5.33538 5.38591 5.41430 5.54167 5.60754 5.79555 5.83540 5.88615 6.15306 6.23747 6.32192 6.46177 6.67685 6.89976 7.29243 7.35167 7.45846 7.79988 7.81963 8.18336 8.81662 9.42620 10.92400 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.003733 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.465864 B = 7498.131480 C = 8706.310364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.161 3.839 3 C -0.162 4.162 4 N -0.400 5.400 5 N -0.254 5.254 6 C 0.085 3.915 7 C -0.208 4.208 8 C 0.074 3.926 9 C -0.704 4.704 10 S 2.695 3.305 11 O -0.963 6.963 12 O -0.982 6.982 13 N -1.104 6.104 14 C 0.246 3.754 15 C -0.530 4.530 16 H 0.065 0.935 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.023 3.977 24 C -0.160 4.160 25 C 0.169 3.831 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.199 0.801 34 H 0.145 0.855 35 H 0.410 0.590 36 H 0.022 0.978 37 H 0.039 0.961 38 H 0.266 0.734 39 H 0.149 0.851 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.246 7.478 -2.402 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.060 3.940 3 C -0.220 4.220 4 N -0.188 5.188 5 N -0.065 5.065 6 C -0.113 4.113 7 C -0.217 4.217 8 C 0.052 3.948 9 C -0.791 4.791 10 S 2.783 3.217 11 O -0.953 6.953 12 O -0.972 6.972 13 N -0.866 5.866 14 C 0.123 3.877 15 C -0.569 4.569 16 H 0.084 0.916 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.002 3.998 24 C -0.183 4.183 25 C 0.052 3.948 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.216 0.784 34 H 0.163 0.837 35 H 0.245 0.755 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.166 0.834 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.436 7.906 -1.865 19.235 hybrid contribution 1.592 0.314 -0.217 1.637 sum -15.844 8.220 -2.081 17.970 Atomic orbital electron populations 1.22144 0.93493 1.02914 1.03298 1.21263 0.95301 0.93842 0.83586 1.22156 1.02099 0.94506 1.03256 1.48641 1.42951 1.22850 1.04341 1.76524 1.20445 1.22042 0.87514 1.25134 0.94966 0.91357 0.99799 1.19948 1.08279 1.01201 0.92225 1.20139 0.87409 0.88287 0.98989 1.30694 1.22282 1.25675 1.00449 1.01699 0.73000 0.73867 0.73134 1.93557 1.86609 1.61886 1.53242 1.93520 1.83192 1.81375 1.39101 1.55451 1.28454 1.82457 1.20209 1.19077 0.93155 0.93974 0.81476 1.21171 0.90705 1.44435 1.00632 0.91646 1.24958 0.99405 0.94918 0.94857 1.69927 1.35645 1.42786 1.04526 0.86482 0.84249 0.78582 0.77661 1.20111 1.21148 1.20000 1.20479 0.91116 0.93561 0.94689 1.19846 1.03691 0.97172 0.97573 1.19029 0.91696 0.88189 0.95842 0.91197 0.92109 0.90695 0.88090 0.90692 0.91869 0.91205 0.78399 0.83738 0.75539 0.96019 0.94309 0.92449 0.83378 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.44 37.16 0.35 -0.91 16 2 C 0.16 1.52 3.67 -67.93 -0.25 1.27 16 3 C -0.16 -1.38 9.44 37.16 0.35 -1.03 16 4 N -0.40 -5.07 3.32 -52.24 -0.17 -5.24 16 5 N -0.25 -3.26 12.22 31.87 0.39 -2.87 16 6 C 0.09 1.01 12.28 -15.15 -0.19 0.82 16 7 C -0.21 -2.96 6.37 -105.21 -0.67 -3.63 16 8 C 0.07 1.08 9.52 -39.58 -0.38 0.71 16 9 C -0.70 -11.56 5.91 -39.95 -0.24 -11.80 16 10 S 2.69 49.27 5.73 -107.50 -0.62 48.66 16 11 O -0.96 -20.30 16.72 -57.17 -0.96 -21.26 16 12 O -0.98 -18.50 17.23 -57.17 -0.99 -19.49 16 13 N -1.10 -21.86 5.99 -11.66 -0.07 -21.93 16 14 C 0.25 5.97 5.98 -5.19 -0.03 5.94 16 15 C -0.53 -14.01 9.27 -34.44 -0.32 -14.33 16 16 H 0.07 1.65 7.65 -52.48 -0.40 1.25 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 19 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C 0.02 0.37 9.44 -39.91 -0.38 -0.01 16 24 C -0.16 -2.27 9.79 -39.79 -0.39 -2.66 16 25 C 0.17 2.42 6.87 -84.17 -0.58 1.85 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.83 7.42 -51.93 -0.39 0.45 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.20 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.14 1.81 7.57 -52.49 -0.40 1.41 16 35 H 0.41 7.39 8.54 -34.47 -0.29 7.09 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.04 1.01 7.75 -51.93 -0.40 0.61 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.15 2.30 7.58 -52.49 -0.40 1.90 16 40 H 0.13 1.48 7.62 -52.49 -0.40 1.08 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -33.53 356.27 -9.33 -42.86 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.20 Total: 4.83 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -2.81 Total: -22.20 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.88 Total: -54.37 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -1.94 Total: -40.75 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 49.27 SS G_CDS: -0.62 Total: 48.66 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.53 -9.33 -42.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487371869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.550 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds