Wall clock time and date at job start Tue Mar 31 2020 14:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47063 * 193.82649 * 3 2 1 5 5 C 1.36831 * 119.99854 * 265.11301 * 4 3 2 6 6 H 1.07995 * 119.99706 * 39.82274 * 5 4 3 7 7 C 1.39074 * 119.99841 * 219.82900 * 5 4 3 8 8 N 1.31352 * 120.00133 * 19.59499 * 7 5 4 9 9 Si 1.86803 * 119.99999 * 199.59441 * 7 5 4 10 10 H 1.48491 * 109.47007 * 64.99990 * 9 7 5 11 11 H 1.48501 * 109.46951 * 184.99812 * 9 7 5 12 12 H 1.48499 * 109.47089 * 304.99935 * 9 7 5 13 13 C 1.34777 * 120.00498 * 85.11119 * 4 3 2 14 14 O 1.21590 * 120.00326 * 175.31043 * 13 4 3 15 15 C 1.47757 * 119.99468 * 355.31231 * 13 4 3 16 16 C 1.39535 * 120.03136 * 174.59641 * 15 13 4 17 17 N 1.32020 * 119.94735 * 179.70696 * 16 15 13 18 18 C 1.32652 * 120.01778 * 0.53714 * 17 16 15 19 19 O 1.35483 * 119.96412 * 179.72864 * 18 17 16 20 20 C 1.35891 * 118.00425 * 5.08982 * 19 18 17 21 21 C 1.38758 * 120.05509 * 252.14214 * 20 19 18 22 22 C 1.38138 * 119.93732 * 180.02562 * 21 20 19 23 23 C 1.38271 * 120.05868 * 359.97438 * 22 21 20 24 24 C 1.38272 * 120.11537 * 0.27118 * 23 22 21 25 25 C 1.38138 * 120.05818 * 359.49598 * 24 23 22 26 26 C 1.39581 * 120.06654 * 359.46099 * 18 17 16 27 27 N 1.31571 * 120.05035 * 0.26743 * 26 18 17 28 28 H 4.40640 * 5.51482 * 179.97438 * 4 1 2 29 29 H 1.08998 * 109.47298 * 73.82833 * 3 2 1 30 30 H 1.08994 * 109.47310 * 313.82425 * 3 2 1 31 31 H 0.96993 * 119.99925 * 184.91449 * 8 7 5 32 32 H 1.07998 * 120.02727 * 359.97438 * 16 15 13 33 33 H 1.07992 * 120.02945 * 359.97438 * 21 20 19 34 34 H 1.07997 * 119.96704 * 179.97438 * 22 21 20 35 35 H 1.08001 * 119.94128 * 180.02562 * 23 22 21 36 36 H 1.08000 * 119.96797 * 179.72681 * 24 23 22 37 37 H 1.07998 * 120.02664 * 180.25692 * 25 24 23 38 38 H 1.08004 * 119.97815 * 180.24781 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.3421 0.3301 5 6 3.4565 2.2180 -0.6703 6 1 2.8428 2.2748 -1.5571 7 6 4.5749 3.0351 -0.5450 8 7 5.5233 2.7239 0.3088 9 14 4.7284 4.5751 -1.5911 10 1 3.6570 5.5340 -1.2205 11 1 6.0549 5.2010 -1.3588 12 1 4.5956 4.2145 -3.0255 13 6 3.2644 1.7135 1.6191 14 8 3.7489 2.7941 1.8943 15 6 2.8189 0.8072 2.6977 16 6 3.0558 1.1401 4.0319 17 7 2.6519 0.3320 4.9945 18 6 2.0308 -0.8008 4.6931 19 8 1.6217 -1.6319 5.6817 20 6 1.7731 -1.2177 6.9670 21 6 2.7420 -1.7967 7.7742 22 6 2.8935 -1.3741 9.0806 23 6 2.0810 -0.3749 9.5839 24 6 1.1113 0.2000 8.7832 25 6 0.9589 -0.2155 7.4746 26 6 1.7934 -1.1345 3.3587 27 7 2.1901 -0.3285 2.3974 28 1 -1.0503 -0.0003 -0.0003 29 1 3.0094 -0.2854 -0.9870 30 1 3.0096 -0.7107 0.7414 31 1 6.2682 3.3293 0.4481 32 1 3.5653 2.0603 4.2770 33 1 3.3765 -2.5774 7.3816 34 1 3.6472 -1.8246 9.7093 35 1 2.2013 -0.0457 10.6055 36 1 0.4751 0.9772 9.1802 37 1 0.2041 0.2369 6.8485 38 1 1.2841 -2.0552 3.1151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490985458.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:37 Heat of formation + Delta-G solvation = 113.440382 kcal Electronic energy + Delta-G solvation = -25979.558020 eV Core-core repulsion = 22177.725396 eV Total energy + Delta-G solvation = -3801.832624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31424 -39.91245 -38.28868 -37.49744 -34.92400 -33.74407 -32.60069 -31.36081 -31.16693 -30.94413 -29.63280 -26.46079 -25.56373 -24.64823 -23.63756 -22.87270 -22.23715 -20.31706 -19.06241 -17.94102 -17.78169 -16.98423 -16.73526 -16.29047 -15.99371 -15.54609 -14.96457 -14.65554 -14.46038 -14.36694 -14.05169 -13.87334 -13.64909 -13.63428 -12.88066 -12.69765 -12.62556 -12.29150 -12.16535 -11.83033 -11.44505 -11.20525 -10.97308 -10.91852 -10.80256 -10.69281 -10.34390 -9.85042 -9.33620 -9.15587 -9.10860 -8.95548 -8.86028 -8.40991 -8.26721 -7.31986 -6.24281 -3.98355 0.84912 1.02781 1.18492 1.33768 2.85962 3.27351 3.33397 3.34539 3.48256 3.58724 3.68479 3.72773 4.21466 4.27445 4.44093 4.61321 4.68657 4.72254 4.74438 4.90068 4.99662 5.15444 5.18916 5.28344 5.32983 5.41974 5.51349 5.78225 5.80847 5.88686 6.14047 6.23308 6.28724 6.30300 6.33358 6.56775 6.67061 6.70659 7.32527 7.44216 7.46692 7.94680 8.09952 8.37273 8.82808 8.97121 9.43694 10.08488 10.79429 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.003307 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.424624 B = 8465.950346 C = 9361.734697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.135 4.135 3 C 0.206 3.794 4 N -0.416 5.416 5 C -0.336 4.336 6 H 0.088 0.912 7 C 0.064 3.936 8 N -0.803 5.803 9 Si 0.915 3.085 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.502 3.498 14 O -0.520 6.520 15 C 0.033 3.967 16 C 0.132 3.868 17 N -0.487 5.487 18 C 0.247 3.753 19 O -0.246 6.246 20 C 0.098 3.902 21 C -0.117 4.117 22 C -0.108 4.108 23 C -0.121 4.121 24 C -0.107 4.107 25 C -0.116 4.116 26 C 0.046 3.954 27 N -0.382 5.382 28 H 0.204 0.796 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.269 0.731 32 H 0.181 0.819 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.737 -9.199 12.971 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.136 4.136 3 C 0.083 3.917 4 N -0.135 5.135 5 C -0.463 4.463 6 H 0.106 0.894 7 C -0.149 4.149 8 N -0.436 5.436 9 Si 0.741 3.259 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.289 3.711 14 O -0.398 6.398 15 C -0.107 4.107 16 C -0.029 4.029 17 N -0.214 5.214 18 C 0.067 3.933 19 O -0.151 6.151 20 C 0.055 3.945 21 C -0.135 4.135 22 C -0.126 4.126 23 C -0.139 4.139 24 C -0.125 4.125 25 C -0.135 4.135 26 C -0.118 4.118 27 N -0.100 5.100 28 H 0.221 0.779 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.198 0.802 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.338 -8.844 13.110 17.036 hybrid contribution -0.137 0.741 -0.221 0.785 sum -6.475 -8.103 12.888 16.544 Atomic orbital electron populations 1.24517 0.95560 1.02329 1.05027 1.23792 0.94885 0.98351 0.96598 1.18921 0.83396 0.87712 1.01690 1.43147 1.55638 1.10237 1.04461 1.19250 1.08792 1.18141 1.00088 0.89422 1.25228 0.93406 0.99327 0.96930 1.69894 1.07531 1.34455 1.31690 0.86214 0.77562 0.82504 0.79584 1.19952 1.21003 1.20003 1.17071 0.86211 0.86119 0.81688 1.90655 1.45325 1.22561 1.81222 1.22946 0.98387 0.93196 0.96205 1.23463 0.93792 0.98034 0.87585 1.68129 1.12153 1.03751 1.37348 1.21253 0.94217 0.89591 0.88278 1.84566 1.76939 1.41340 1.12222 1.18590 0.96319 0.96988 0.82576 1.21162 0.96292 1.01346 0.94742 1.21000 0.99498 0.97343 0.94795 1.21206 0.95914 0.96765 1.00029 1.21011 0.98480 0.99718 0.93271 1.21331 0.99474 0.96244 0.96445 1.23015 1.01691 1.01718 0.85376 1.69198 1.06242 1.02345 1.32254 0.77867 0.89616 0.87761 0.92020 0.80196 0.85314 0.85369 0.85694 0.85508 0.85791 0.81002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.44 19.25 29.55 0.57 -3.87 16 2 C -0.13 -2.62 11.79 -37.12 -0.44 -3.06 16 3 C 0.21 4.26 5.48 -6.83 -0.04 4.22 16 4 N -0.42 -10.47 2.50 -119.05 -0.30 -10.77 16 5 C -0.34 -9.00 9.28 -15.01 -0.14 -9.14 16 6 H 0.09 2.26 7.91 -52.49 -0.42 1.84 16 7 C 0.06 1.74 4.36 -17.45 -0.08 1.66 16 8 N -0.80 -22.88 11.23 55.50 0.62 -22.26 16 9 Si 0.92 21.09 29.60 -169.99 -5.03 16.06 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 C 0.50 12.85 7.00 -12.37 -0.09 12.76 16 14 O -0.52 -14.92 13.44 5.29 0.07 -14.85 16 15 C 0.03 0.69 6.56 -82.88 -0.54 0.15 16 16 C 0.13 2.56 10.77 -16.99 -0.18 2.38 16 17 N -0.49 -8.61 9.23 -12.73 -0.12 -8.73 16 18 C 0.25 4.00 7.36 -16.70 -0.12 3.87 16 19 O -0.25 -3.60 9.97 -2.31 -0.02 -3.62 16 20 C 0.10 1.32 5.21 -39.20 -0.20 1.12 16 21 C -0.12 -1.37 9.99 -39.43 -0.39 -1.77 16 22 C -0.11 -1.06 10.04 -39.61 -0.40 -1.45 16 23 C -0.12 -1.13 10.04 -39.56 -0.40 -1.53 16 24 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 25 C -0.12 -1.46 9.52 -39.43 -0.38 -1.83 16 26 C 0.05 0.72 11.18 -17.16 -0.19 0.53 16 27 N -0.38 -7.12 4.97 -9.49 -0.05 -7.17 16 28 H 0.20 2.74 7.80 -54.08 -0.42 2.32 16 29 H 0.09 1.67 8.00 -51.93 -0.42 1.25 16 30 H 0.11 2.06 5.64 -51.93 -0.29 1.77 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 32 H 0.18 3.45 7.65 -52.49 -0.40 3.05 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.17 2.12 8.06 -52.48 -0.42 1.69 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -32.19 343.78 -6.68 -38.87 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.62 Total: 4.74 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -3.41 Total: 2.55 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.16 Total: -48.92 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.05 Total: -18.47 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.19 -6.68 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985458.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.308 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds