Wall clock time and date at job start Tue Mar 31 2020 14:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47063 * 193.82649 * 3 2 1 5 5 C 1.36831 * 119.99854 * 265.11301 * 4 3 2 6 6 H 1.07995 * 119.99706 * 39.82274 * 5 4 3 7 7 C 1.39074 * 119.99841 * 219.82900 * 5 4 3 8 8 N 1.31352 * 120.00133 * 19.59499 * 7 5 4 9 9 Si 1.86803 * 119.99999 * 199.59441 * 7 5 4 10 10 H 1.48491 * 109.47007 * 64.99990 * 9 7 5 11 11 H 1.48501 * 109.46951 * 184.99812 * 9 7 5 12 12 H 1.48499 * 109.47089 * 304.99935 * 9 7 5 13 13 C 1.34777 * 120.00498 * 85.11119 * 4 3 2 14 14 O 1.21590 * 120.00326 * 175.31043 * 13 4 3 15 15 C 1.47757 * 119.99468 * 355.31231 * 13 4 3 16 16 C 1.39535 * 120.03136 * 174.59641 * 15 13 4 17 17 N 1.32020 * 119.94735 * 179.70696 * 16 15 13 18 18 C 1.32652 * 120.01778 * 0.53714 * 17 16 15 19 19 O 1.35483 * 119.96412 * 179.72864 * 18 17 16 20 20 C 1.35891 * 118.00425 * 5.08982 * 19 18 17 21 21 C 1.38758 * 120.05509 * 252.14214 * 20 19 18 22 22 C 1.38138 * 119.93732 * 180.02562 * 21 20 19 23 23 C 1.38271 * 120.05868 * 359.97438 * 22 21 20 24 24 C 1.38272 * 120.11537 * 0.27118 * 23 22 21 25 25 C 1.38138 * 120.05818 * 359.49598 * 24 23 22 26 26 C 1.39581 * 120.06654 * 359.46099 * 18 17 16 27 27 N 1.31571 * 120.05035 * 0.26743 * 26 18 17 28 28 H 4.40640 * 5.51482 * 179.97438 * 4 1 2 29 29 H 1.08998 * 109.47298 * 73.82833 * 3 2 1 30 30 H 1.08994 * 109.47310 * 313.82425 * 3 2 1 31 31 H 0.96993 * 119.99925 * 184.91449 * 8 7 5 32 32 H 1.07998 * 120.02727 * 359.97438 * 16 15 13 33 33 H 1.07992 * 120.02945 * 359.97438 * 21 20 19 34 34 H 1.07997 * 119.96704 * 179.97438 * 22 21 20 35 35 H 1.08001 * 119.94128 * 180.02562 * 23 22 21 36 36 H 1.08000 * 119.96797 * 179.72681 * 24 23 22 37 37 H 1.07998 * 120.02664 * 180.25692 * 25 24 23 38 38 H 1.08004 * 119.97815 * 180.24781 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.3421 0.3301 5 6 3.4565 2.2180 -0.6703 6 1 2.8428 2.2748 -1.5571 7 6 4.5749 3.0351 -0.5450 8 7 5.5233 2.7239 0.3088 9 14 4.7284 4.5751 -1.5911 10 1 3.6570 5.5340 -1.2205 11 1 6.0549 5.2010 -1.3588 12 1 4.5956 4.2145 -3.0255 13 6 3.2644 1.7135 1.6191 14 8 3.7489 2.7941 1.8943 15 6 2.8189 0.8072 2.6977 16 6 3.0558 1.1401 4.0319 17 7 2.6519 0.3320 4.9945 18 6 2.0308 -0.8008 4.6931 19 8 1.6217 -1.6319 5.6817 20 6 1.7731 -1.2177 6.9670 21 6 2.7420 -1.7967 7.7742 22 6 2.8935 -1.3741 9.0806 23 6 2.0810 -0.3749 9.5839 24 6 1.1113 0.2000 8.7832 25 6 0.9589 -0.2155 7.4746 26 6 1.7934 -1.1345 3.3587 27 7 2.1901 -0.3285 2.3974 28 1 -1.0503 -0.0003 -0.0003 29 1 3.0094 -0.2854 -0.9870 30 1 3.0096 -0.7107 0.7414 31 1 6.2682 3.3293 0.4481 32 1 3.5653 2.0603 4.2770 33 1 3.3765 -2.5774 7.3816 34 1 3.6472 -1.8246 9.7093 35 1 2.2013 -0.0457 10.6055 36 1 0.4751 0.9772 9.1802 37 1 0.2041 0.2369 6.8485 38 1 1.2841 -2.0552 3.1151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490985458.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:36 Heat of formation + Delta-G solvation = 93.675526 kcal Electronic energy + Delta-G solvation = -25980.415089 eV Core-core repulsion = 22177.725396 eV Total energy + Delta-G solvation = -3802.689693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.66837 -41.15403 -39.87543 -38.65363 -36.72661 -35.28426 -34.36524 -32.95115 -32.35429 -31.97382 -30.75939 -28.19388 -27.20054 -26.07929 -25.22631 -23.72750 -23.30847 -22.06999 -20.20856 -19.48264 -19.27881 -18.59370 -17.83210 -17.64049 -17.38024 -16.75219 -16.65965 -16.11590 -15.96713 -15.84603 -15.40506 -15.28458 -15.00867 -14.43921 -14.37494 -14.23958 -14.04758 -13.77432 -13.46284 -13.30481 -12.82216 -12.75177 -12.62696 -12.40985 -12.31587 -12.12668 -11.87993 -11.42318 -10.89622 -10.78757 -10.61145 -10.12943 -10.00143 -9.96291 -9.64462 -9.29077 -8.24248 -6.04655 -0.56312 -0.09914 0.05948 0.35988 1.41851 1.49549 1.53617 1.74174 1.94720 2.05876 2.21421 2.40888 2.77692 2.82306 2.88840 2.91480 3.21047 3.29680 3.45285 3.81911 3.90516 3.92249 4.02678 4.19069 4.20484 4.41937 4.45031 4.50039 4.55934 4.71529 4.88467 4.99804 5.11806 5.30008 5.34048 5.37854 5.42464 5.49140 5.74553 5.96937 6.08570 6.20920 6.54835 6.87719 6.94220 7.05783 7.50561 8.16468 8.79986 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.003307 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.424624 B = 8465.950346 C = 9361.734697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.182 4.182 3 C 0.210 3.790 4 N -0.433 5.433 5 C -0.362 4.362 6 H 0.089 0.911 7 C 0.019 3.981 8 N -0.844 5.844 9 Si 0.975 3.025 10 H -0.282 1.282 11 H -0.283 1.283 12 H -0.254 1.254 13 C 0.497 3.503 14 O -0.565 6.565 15 C 0.006 3.994 16 C 0.134 3.866 17 N -0.490 5.490 18 C 0.267 3.733 19 O -0.238 6.238 20 C 0.060 3.940 21 C -0.127 4.127 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.111 4.111 25 C -0.132 4.132 26 C 0.058 3.942 27 N -0.380 5.380 28 H 0.243 0.757 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.264 0.736 32 H 0.173 0.827 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.117 0.883 38 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 -10.709 14.858 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.183 4.183 3 C 0.088 3.912 4 N -0.151 5.151 5 C -0.490 4.490 6 H 0.107 0.893 7 C -0.189 4.189 8 N -0.478 5.478 9 Si 0.799 3.201 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.178 1.178 13 C 0.285 3.715 14 O -0.445 6.445 15 C -0.132 4.132 16 C -0.025 4.025 17 N -0.218 5.218 18 C 0.085 3.915 19 O -0.142 6.142 20 C 0.018 3.982 21 C -0.145 4.145 22 C -0.126 4.126 23 C -0.132 4.132 24 C -0.129 4.129 25 C -0.151 4.151 26 C -0.108 4.108 27 N -0.098 5.098 28 H 0.259 0.741 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.074 0.926 32 H 0.190 0.810 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.135 0.865 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.056 -10.367 14.968 19.910 hybrid contribution 0.194 0.967 -0.468 1.092 sum -7.862 -9.399 14.500 18.984 Atomic orbital electron populations 1.25380 0.96323 0.99638 1.02546 1.23667 0.95004 1.00759 0.98906 1.18870 0.84725 0.85733 1.01887 1.43335 1.55968 1.11624 1.04170 1.19482 1.09014 1.19705 1.00767 0.89291 1.26070 0.93053 1.01880 0.97929 1.69996 1.08248 1.35331 1.34252 0.85294 0.76974 0.78721 0.79094 1.20803 1.20888 1.17822 1.17661 0.84876 0.86290 0.82693 1.90597 1.46987 1.24630 1.82318 1.22283 1.01141 0.94451 0.95308 1.23268 0.93843 0.98150 0.87275 1.68179 1.12731 1.04304 1.36568 1.21589 0.91862 0.88741 0.89343 1.84612 1.76203 1.40571 1.12796 1.18924 0.98341 0.98975 0.81975 1.21398 0.95996 1.01549 0.95607 1.21411 0.99849 0.97066 0.94238 1.21659 0.94550 0.95652 1.01314 1.21353 0.99013 1.00052 0.92511 1.21435 0.99583 0.96446 0.97625 1.23651 1.00464 1.02092 0.84624 1.69107 1.05665 1.01634 1.33347 0.74051 0.89469 0.87224 0.92625 0.80981 0.84604 0.82437 0.82449 0.83300 0.86477 0.76858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.09 19.25 74.32 1.43 -5.66 16 2 C -0.18 -6.93 11.79 31.13 0.37 -6.57 16 3 C 0.21 8.85 5.48 84.57 0.46 9.32 16 4 N -0.43 -22.58 2.50 -648.82 -1.62 -24.20 16 5 C -0.36 -20.18 9.28 84.11 0.78 -19.40 16 6 H 0.09 4.74 7.91 -2.91 -0.02 4.72 16 7 C 0.02 1.09 4.36 84.97 0.37 1.46 16 8 N -0.84 -50.53 11.23 21.68 0.24 -50.28 16 9 Si 0.98 44.71 29.60 68.60 2.03 46.74 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.25 -10.66 7.11 99.48 0.71 -9.95 16 13 C 0.50 26.57 7.00 86.76 0.61 27.18 16 14 O -0.56 -34.22 13.44 -4.00 -0.05 -34.28 16 15 C 0.01 0.26 6.56 41.76 0.27 0.53 16 16 C 0.13 5.31 10.77 84.98 0.91 6.23 16 17 N -0.49 -17.09 9.23 -306.97 -2.83 -19.92 16 18 C 0.27 8.20 7.36 84.89 0.62 8.83 16 19 O -0.24 -6.52 9.97 -31.17 -0.31 -6.83 16 20 C 0.06 1.52 5.21 22.52 0.12 1.64 16 21 C -0.13 -2.71 9.99 22.37 0.22 -2.48 16 22 C -0.11 -1.75 10.04 22.25 0.22 -1.52 16 23 C -0.11 -1.72 10.04 22.29 0.22 -1.49 16 24 C -0.11 -2.01 10.04 22.25 0.22 -1.79 16 25 C -0.13 -3.11 9.52 22.37 0.21 -2.90 16 26 C 0.06 1.69 11.18 85.06 0.95 2.64 16 27 N -0.38 -13.89 4.97 -183.94 -0.91 -14.80 16 28 H 0.24 5.48 7.80 -4.41 -0.03 5.44 16 29 H 0.09 3.51 8.00 -2.39 -0.02 3.49 16 30 H 0.11 4.39 5.64 -2.39 -0.01 4.38 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 32 H 0.17 7.00 7.65 -2.91 -0.02 6.98 16 33 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 36 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.21 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -73.66 343.78 5.64 -68.02 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.10 Total: 19.55 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 8.01 Total: 16.00 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -5.13 Total: -109.21 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.36 Total: -41.10 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -73.66 5.64 -68.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985458.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.698 kcal (2) G-P(sol) polarization free energy of solvation -73.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds