Wall clock time and date at job start Tue Mar 31 2020 14:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47244 * 280.87578 * 3 2 1 5 5 C 1.36869 * 120.00211 * 69.65607 * 4 3 2 6 6 H 1.08001 * 119.99772 * 190.53744 * 5 4 3 7 7 C 1.39046 * 119.99966 * 10.54330 * 5 4 3 8 8 N 1.31355 * 119.99916 * 318.97544 * 7 5 4 9 9 Si 1.86802 * 119.99923 * 138.97710 * 7 5 4 10 10 H 1.48491 * 109.47235 * 59.99850 * 9 7 5 11 11 H 1.48503 * 109.46932 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46885 * 299.99663 * 9 7 5 13 13 C 1.34781 * 119.99763 * 249.66070 * 4 3 2 14 14 O 1.21587 * 120.00029 * 185.64854 * 13 4 3 15 15 C 1.47734 * 119.99845 * 5.64921 * 13 4 3 16 16 C 1.39674 * 120.12515 * 31.69657 * 15 13 4 17 17 C 1.37952 * 119.96337 * 179.78567 * 16 15 13 18 18 C 1.38299 * 120.21264 * 0.49382 * 17 16 15 19 19 C 1.38848 * 120.24950 * 359.73314 * 18 17 16 20 20 O 1.35901 * 119.98109 * 179.97438 * 19 18 17 21 21 C 1.35674 * 118.00384 * 256.97907 * 20 19 18 22 22 C 1.39133 * 120.07404 * 184.13021 * 21 20 19 23 23 N 1.31964 * 119.91016 * 179.97438 * 22 21 20 24 24 C 1.32246 * 120.06996 * 359.97438 * 23 22 21 25 25 C 1.38192 * 120.14730 * 359.97438 * 24 23 22 26 26 N 1.32225 * 120.08807 * 359.78862 * 25 24 23 27 27 C 1.38490 * 120.03155 * 0.03333 * 19 18 17 28 28 H 4.40636 * 5.51402 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46878 * 40.87061 * 3 2 1 30 30 H 1.09000 * 109.47074 * 160.87183 * 3 2 1 31 31 H 0.97001 * 120.00464 * 180.02562 * 8 7 5 32 32 H 1.07998 * 120.02219 * 0.02562 * 16 15 13 33 33 H 1.07998 * 119.89322 * 180.22964 * 17 16 15 34 34 H 1.08005 * 119.87394 * 179.76256 * 18 17 16 35 35 H 1.08002 * 120.04075 * 359.95430 * 22 21 20 36 36 H 1.08001 * 119.92514 * 180.02562 * 24 23 22 37 37 H 1.08001 * 119.95380 * 180.02562 * 25 24 23 38 38 H 1.08007 * 120.10429 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2597 1.3564 5 6 2.9746 -1.4989 1.9152 6 1 3.1764 -1.6475 2.9658 7 6 2.5527 -2.5663 1.1305 8 7 1.6078 -2.3900 0.2351 9 14 3.3293 -4.2510 1.3495 10 1 3.1099 -4.7201 2.7412 11 1 2.7080 -5.2097 0.4007 12 1 4.7872 -4.1626 1.0810 13 6 3.7412 0.7210 2.0540 14 8 4.2376 0.4789 3.1372 15 6 3.8030 2.0902 1.5025 16 6 2.7722 2.5652 0.6884 17 6 2.8312 3.8458 0.1788 18 6 3.9134 4.6587 0.4629 19 6 4.9452 4.1939 1.2673 20 8 6.0063 4.9971 1.5425 21 6 7.1664 4.7706 0.8765 22 6 8.3037 5.5101 1.1856 23 7 9.4305 5.2868 0.5361 24 6 9.4794 4.3611 -0.4071 25 6 8.3517 3.6244 -0.7155 26 7 7.2207 3.8399 -0.0653 27 6 4.8942 2.9117 1.7882 28 1 -1.0499 0.0002 0.0001 29 1 3.0096 -0.7763 -0.6725 30 1 3.0089 0.9717 -0.3367 31 1 1.3131 -3.1347 -0.3122 32 1 1.9275 1.9317 0.4611 33 1 2.0317 4.2132 -0.4476 34 1 3.9557 5.6590 0.0578 35 1 8.2641 6.2662 1.9559 36 1 10.4029 4.1800 -0.9369 37 1 8.3952 2.8689 -1.4861 38 1 5.6964 2.5488 2.4138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491023041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:31 Heat of formation + Delta-G solvation = 116.568600 kcal Electronic energy + Delta-G solvation = -26043.316972 eV Core-core repulsion = 22241.619998 eV Total energy + Delta-G solvation = -3801.696975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57132 -40.03522 -38.94810 -36.99474 -35.39003 -34.25860 -32.42148 -31.45812 -31.37671 -30.74422 -29.64270 -26.56977 -25.30267 -25.15376 -24.39599 -22.89015 -22.13329 -19.95994 -18.63672 -18.12651 -18.07027 -17.02580 -16.59440 -16.35625 -16.28638 -16.05735 -15.15920 -14.84976 -14.72817 -14.57332 -14.21815 -14.02640 -13.56189 -13.12618 -12.93439 -12.91209 -12.74173 -12.31401 -12.10500 -11.87398 -11.68016 -11.41123 -11.21598 -10.96518 -10.88077 -10.63200 -10.34934 -9.44717 -9.40201 -9.26573 -9.03696 -8.87394 -8.74671 -8.55622 -8.32445 -8.17659 -6.59728 -3.83379 0.61758 0.92151 1.14411 1.42869 2.79771 3.09911 3.19647 3.24744 3.49947 3.56677 3.75871 3.91913 3.96641 4.06461 4.12085 4.21930 4.33596 4.68198 4.87226 4.90470 5.03930 5.13617 5.16400 5.27250 5.45100 5.49751 5.59041 5.63718 5.68576 6.02423 6.10379 6.16633 6.47536 6.54336 6.57494 6.70285 6.79963 6.95678 7.02476 7.32101 7.35250 7.59436 7.92206 8.27791 8.84991 8.98765 9.19101 9.80108 10.31088 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.003629 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.609715 B = 7714.002394 C = 8623.692090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.108 4.108 3 C 0.207 3.793 4 N -0.416 5.416 5 C -0.335 4.335 6 H 0.113 0.887 7 C 0.055 3.945 8 N -0.809 5.809 9 Si 0.899 3.101 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.465 3.535 14 O -0.584 6.584 15 C -0.079 4.079 16 C -0.107 4.107 17 C -0.113 4.113 18 C -0.113 4.113 19 C 0.074 3.926 20 O -0.237 6.237 21 C 0.274 3.726 22 C 0.042 3.958 23 N -0.406 5.406 24 C 0.001 3.999 25 C 0.098 3.902 26 N -0.480 5.480 27 C -0.072 4.072 28 H 0.198 0.802 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.273 0.727 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.829 12.678 -6.990 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.110 4.110 3 C 0.085 3.915 4 N -0.132 5.132 5 C -0.460 4.460 6 H 0.130 0.870 7 C -0.155 4.155 8 N -0.442 5.442 9 Si 0.724 3.276 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.256 3.744 14 O -0.470 6.470 15 C -0.083 4.083 16 C -0.126 4.126 17 C -0.131 4.131 18 C -0.132 4.132 19 C 0.032 3.968 20 O -0.141 6.141 21 C 0.093 3.907 22 C -0.121 4.121 23 N -0.121 5.121 24 C -0.157 4.157 25 C -0.062 4.062 26 N -0.208 5.208 27 C -0.092 4.092 28 H 0.216 0.784 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.194 0.806 36 H 0.190 0.810 37 H 0.191 0.809 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.877 12.574 -6.407 15.699 hybrid contribution -0.163 -1.224 -0.181 1.248 sum 6.714 11.350 -6.588 14.741 Atomic orbital electron populations 1.24156 0.95194 1.06273 1.00969 1.22477 0.93755 0.95380 0.99353 1.18946 0.85164 1.00982 0.86441 1.43723 1.46750 1.10488 1.12242 1.19481 1.46887 0.82556 0.97106 0.86985 1.25291 0.94167 1.00237 0.95830 1.70379 1.18336 1.33506 1.21988 0.86434 0.80773 0.81649 0.78777 1.19471 1.21016 1.19603 1.17592 0.86339 0.83704 0.86790 1.90620 1.51916 1.82206 1.22282 1.20129 0.94618 0.95932 0.97622 1.22079 0.99042 0.95953 0.95514 1.20901 0.97935 0.93512 1.00785 1.21100 0.94707 1.00408 0.97019 1.18336 0.87187 0.90648 1.00645 1.84682 1.16735 1.53913 1.58783 1.21288 0.87659 0.91813 0.89925 1.22882 0.86184 1.01379 1.01663 1.68465 1.24588 1.14486 1.04572 1.23596 1.00377 0.94585 0.97145 1.23614 0.87582 0.97855 0.97109 1.68224 1.28784 1.16567 1.07196 1.21235 0.98396 0.91494 0.98073 0.78446 0.89375 0.89492 0.91558 0.83565 0.85106 0.85667 0.80570 0.81022 0.80906 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.94 18.89 29.55 0.56 -4.38 16 2 C -0.11 -2.32 8.70 -37.12 -0.32 -2.65 16 3 C 0.21 4.48 4.77 -6.83 -0.03 4.45 16 4 N -0.42 -10.45 2.69 -119.05 -0.32 -10.77 16 5 C -0.33 -9.08 9.09 -15.00 -0.14 -9.22 16 6 H 0.11 3.26 7.47 -52.49 -0.39 2.86 16 7 C 0.06 1.38 4.84 -17.46 -0.08 1.29 16 8 N -0.81 -19.94 8.88 55.50 0.49 -19.44 16 9 Si 0.90 19.66 29.69 -169.99 -5.05 14.61 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 C 0.46 11.60 7.35 -12.38 -0.09 11.51 16 14 O -0.58 -16.55 16.38 5.29 0.09 -16.46 16 15 C -0.08 -1.61 5.36 -104.99 -0.56 -2.18 16 16 C -0.11 -1.87 7.36 -39.15 -0.29 -2.16 16 17 C -0.11 -1.60 10.03 -39.66 -0.40 -2.00 16 18 C -0.11 -1.60 9.98 -39.33 -0.39 -1.99 16 19 C 0.07 1.19 5.09 -39.26 -0.20 0.99 16 20 O -0.24 -3.50 9.97 -2.92 -0.03 -3.53 16 21 C 0.27 3.73 7.40 -16.92 -0.13 3.60 16 22 C 0.04 0.48 11.18 -17.16 -0.19 0.29 16 23 N -0.41 -4.57 10.49 -12.92 -0.14 -4.70 16 24 C 0.00 0.01 11.21 -17.39 -0.19 -0.18 16 25 C 0.10 1.01 11.22 -17.40 -0.20 0.82 16 26 N -0.48 -6.69 9.38 -13.12 -0.12 -6.81 16 27 C -0.07 -1.36 9.31 -39.00 -0.36 -1.72 16 28 H 0.20 3.23 7.80 -54.09 -0.42 2.81 16 29 H 0.09 1.97 7.06 -51.93 -0.37 1.60 16 30 H 0.09 1.65 4.36 -51.93 -0.23 1.42 16 31 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 32 H 0.15 2.64 4.12 -52.49 -0.22 2.43 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 2.58 7.95 -52.48 -0.42 2.17 16 LS Contribution 337.93 15.07 5.09 5.09 Total: -1.00 -32.15 337.93 -6.29 -38.45 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.29 Total: 7.08 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.02 Total: -3.51 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.09 Total: -41.72 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.06 Total: -20.00 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.05 Total: 14.61 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.15 -6.29 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491023041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.015 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds