Wall clock time and date at job start Tue Mar 31 2020 14:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47244 * 280.87578 * 3 2 1 5 5 C 1.36869 * 120.00211 * 69.65607 * 4 3 2 6 6 H 1.08001 * 119.99772 * 190.53744 * 5 4 3 7 7 C 1.39046 * 119.99966 * 10.54330 * 5 4 3 8 8 N 1.31355 * 119.99916 * 318.97544 * 7 5 4 9 9 Si 1.86802 * 119.99923 * 138.97710 * 7 5 4 10 10 H 1.48491 * 109.47235 * 59.99850 * 9 7 5 11 11 H 1.48503 * 109.46932 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46885 * 299.99663 * 9 7 5 13 13 C 1.34781 * 119.99763 * 249.66070 * 4 3 2 14 14 O 1.21587 * 120.00029 * 185.64854 * 13 4 3 15 15 C 1.47734 * 119.99845 * 5.64921 * 13 4 3 16 16 C 1.39674 * 120.12515 * 31.69657 * 15 13 4 17 17 C 1.37952 * 119.96337 * 179.78567 * 16 15 13 18 18 C 1.38299 * 120.21264 * 0.49382 * 17 16 15 19 19 C 1.38848 * 120.24950 * 359.73314 * 18 17 16 20 20 O 1.35901 * 119.98109 * 179.97438 * 19 18 17 21 21 C 1.35674 * 118.00384 * 256.97907 * 20 19 18 22 22 C 1.39133 * 120.07404 * 184.13021 * 21 20 19 23 23 N 1.31964 * 119.91016 * 179.97438 * 22 21 20 24 24 C 1.32246 * 120.06996 * 359.97438 * 23 22 21 25 25 C 1.38192 * 120.14730 * 359.97438 * 24 23 22 26 26 N 1.32225 * 120.08807 * 359.78862 * 25 24 23 27 27 C 1.38490 * 120.03155 * 0.03333 * 19 18 17 28 28 H 4.40636 * 5.51402 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46878 * 40.87061 * 3 2 1 30 30 H 1.09000 * 109.47074 * 160.87183 * 3 2 1 31 31 H 0.97001 * 120.00464 * 180.02562 * 8 7 5 32 32 H 1.07998 * 120.02219 * 0.02562 * 16 15 13 33 33 H 1.07998 * 119.89322 * 180.22964 * 17 16 15 34 34 H 1.08005 * 119.87394 * 179.76256 * 18 17 16 35 35 H 1.08002 * 120.04075 * 359.95430 * 22 21 20 36 36 H 1.08001 * 119.92514 * 180.02562 * 24 23 22 37 37 H 1.08001 * 119.95380 * 180.02562 * 25 24 23 38 38 H 1.08007 * 120.10429 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2597 1.3564 5 6 2.9746 -1.4989 1.9152 6 1 3.1764 -1.6475 2.9658 7 6 2.5527 -2.5663 1.1305 8 7 1.6078 -2.3900 0.2351 9 14 3.3293 -4.2510 1.3495 10 1 3.1099 -4.7201 2.7412 11 1 2.7080 -5.2097 0.4007 12 1 4.7872 -4.1626 1.0810 13 6 3.7412 0.7210 2.0540 14 8 4.2376 0.4789 3.1372 15 6 3.8030 2.0902 1.5025 16 6 2.7722 2.5652 0.6884 17 6 2.8312 3.8458 0.1788 18 6 3.9134 4.6587 0.4629 19 6 4.9452 4.1939 1.2673 20 8 6.0063 4.9971 1.5425 21 6 7.1664 4.7706 0.8765 22 6 8.3037 5.5101 1.1856 23 7 9.4305 5.2868 0.5361 24 6 9.4794 4.3611 -0.4071 25 6 8.3517 3.6244 -0.7155 26 7 7.2207 3.8399 -0.0653 27 6 4.8942 2.9117 1.7882 28 1 -1.0499 0.0002 0.0001 29 1 3.0096 -0.7763 -0.6725 30 1 3.0089 0.9717 -0.3367 31 1 1.3131 -3.1347 -0.3122 32 1 1.9275 1.9317 0.4611 33 1 2.0317 4.2132 -0.4476 34 1 3.9557 5.6590 0.0578 35 1 8.2641 6.2662 1.9559 36 1 10.4029 4.1800 -0.9369 37 1 8.3952 2.8689 -1.4861 38 1 5.6964 2.5488 2.4138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491023041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:30 Heat of formation + Delta-G solvation = 94.872124 kcal Electronic energy + Delta-G solvation = -26044.257802 eV Core-core repulsion = 22241.619998 eV Total energy + Delta-G solvation = -3802.637804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.53415 -41.40219 -40.36306 -38.38370 -37.30399 -35.15516 -34.24323 -33.18965 -32.41789 -32.13327 -30.85952 -28.29624 -27.11341 -26.11034 -25.29763 -24.42938 -23.33189 -21.46208 -19.96915 -19.91419 -19.02450 -18.30760 -17.87965 -17.76474 -17.63351 -17.38057 -16.66136 -16.22327 -16.17616 -15.91400 -15.58424 -15.46647 -14.87800 -14.61666 -14.50402 -14.15859 -13.97233 -13.86537 -13.80510 -13.23234 -12.97505 -12.68628 -12.53768 -12.50200 -12.34209 -12.14389 -12.08979 -11.14069 -10.99842 -10.69591 -10.51422 -10.30331 -10.13934 -10.03746 -9.90327 -9.67206 -8.50993 -5.86648 -0.26257 -0.14512 0.02278 0.12824 1.29227 1.39479 1.47436 1.67393 1.96479 2.07044 2.28118 2.40913 2.64940 2.66119 2.87754 3.01464 3.17145 3.32801 3.46758 3.77209 3.83808 3.93996 4.04574 4.16408 4.17751 4.22793 4.37331 4.49605 4.51838 4.61087 4.78470 4.81829 5.14729 5.19409 5.25090 5.34195 5.38101 5.40932 5.61703 5.94302 6.16005 6.22619 6.33507 6.69791 7.02380 7.22330 7.28260 7.88732 8.37669 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.003629 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.609715 B = 7714.002394 C = 8623.692090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.146 4.146 3 C 0.213 3.787 4 N -0.424 5.424 5 C -0.386 4.386 6 H 0.074 0.926 7 C 0.037 3.963 8 N -0.810 5.810 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.263 1.263 12 H -0.277 1.277 13 C 0.452 3.548 14 O -0.638 6.638 15 C -0.103 4.103 16 C -0.111 4.111 17 C -0.092 4.092 18 C -0.095 4.095 19 C 0.081 3.919 20 O -0.244 6.244 21 C 0.246 3.754 22 C 0.045 3.955 23 N -0.421 5.421 24 C 0.018 3.982 25 C 0.089 3.911 26 N -0.511 5.511 27 C -0.087 4.087 28 H 0.233 0.767 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.281 0.719 32 H 0.142 0.858 33 H 0.177 0.823 34 H 0.164 0.836 35 H 0.197 0.803 36 H 0.212 0.788 37 H 0.202 0.798 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 14.318 -9.780 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.148 4.148 3 C 0.091 3.909 4 N -0.139 5.139 5 C -0.511 4.511 6 H 0.092 0.908 7 C -0.174 4.174 8 N -0.441 5.441 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.187 1.187 12 H -0.202 1.202 13 C 0.244 3.756 14 O -0.528 6.528 15 C -0.106 4.106 16 C -0.130 4.130 17 C -0.110 4.110 18 C -0.114 4.114 19 C 0.039 3.961 20 O -0.148 6.148 21 C 0.066 3.934 22 C -0.117 4.117 23 N -0.136 5.136 24 C -0.141 4.141 25 C -0.070 4.070 26 N -0.239 5.239 27 C -0.107 4.107 28 H 0.249 0.751 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.159 0.841 33 H 0.194 0.806 34 H 0.182 0.818 35 H 0.214 0.786 36 H 0.229 0.771 37 H 0.218 0.782 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.652 14.230 -9.235 18.222 hybrid contribution -0.013 -1.631 0.606 1.740 sum 6.639 12.600 -8.629 16.652 Atomic orbital electron populations 1.24992 0.96071 1.04502 0.99098 1.22625 0.94163 0.96990 1.01011 1.18957 0.85828 1.01761 0.84306 1.43821 1.46755 1.09968 1.13325 1.19226 1.50632 0.84846 0.96400 0.90808 1.25812 0.93639 1.02477 0.95457 1.70401 1.17525 1.34616 1.21595 0.85568 0.79430 0.78172 0.78696 1.20100 1.18714 1.20244 1.18413 0.85315 0.85527 0.86340 1.90547 1.53932 1.83634 1.24691 1.19779 0.96913 0.93751 1.00201 1.22039 0.97898 0.97588 0.95450 1.21333 0.98626 0.91537 0.99486 1.21558 0.93148 1.01787 0.94878 1.18401 0.88335 0.89476 0.99935 1.84630 1.17023 1.53477 1.59699 1.21456 0.87654 0.93241 0.91004 1.23195 0.85442 1.01266 1.01764 1.68576 1.24268 1.15410 1.05351 1.24253 1.01365 0.92677 0.95766 1.24175 0.86981 0.98500 0.97306 1.68155 1.30792 1.17038 1.07940 1.21076 0.97619 0.93063 0.98928 0.75082 0.90739 0.87036 0.90758 0.84106 0.80584 0.81824 0.78592 0.77127 0.78151 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.74 18.89 74.32 1.40 -7.33 16 2 C -0.15 -6.27 8.70 31.13 0.27 -6.00 16 3 C 0.21 9.45 4.77 84.57 0.40 9.86 16 4 N -0.42 -22.53 2.69 -648.83 -1.75 -24.27 16 5 C -0.39 -22.23 9.09 84.10 0.76 -21.47 16 6 H 0.07 4.70 7.47 -2.91 -0.02 4.68 16 7 C 0.04 1.91 4.84 84.96 0.41 2.32 16 8 N -0.81 -39.86 8.88 21.68 0.19 -39.67 16 9 Si 0.96 41.19 29.69 68.60 2.04 43.23 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 12 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 13 C 0.45 24.25 7.35 86.75 0.64 24.88 16 14 O -0.64 -39.52 16.38 -3.99 -0.07 -39.59 16 15 C -0.10 -4.38 5.36 -20.10 -0.11 -4.48 16 16 C -0.11 -3.80 7.36 22.55 0.17 -3.63 16 17 C -0.09 -2.30 10.03 22.22 0.22 -2.07 16 18 C -0.10 -2.38 9.98 22.43 0.22 -2.15 16 19 C 0.08 2.55 5.09 22.48 0.11 2.66 16 20 O -0.24 -7.07 9.97 -33.37 -0.33 -7.40 16 21 C 0.25 6.55 7.40 84.80 0.63 7.17 16 22 C 0.04 0.97 11.18 84.89 0.95 1.92 16 23 N -0.42 -8.63 10.49 -194.80 -2.04 -10.68 16 24 C 0.02 0.29 11.21 84.62 0.95 1.24 16 25 C 0.09 1.70 11.22 84.62 0.95 2.64 16 26 N -0.51 -13.85 9.38 -308.16 -2.89 -16.74 16 27 C -0.09 -3.42 9.31 22.65 0.21 -3.21 16 28 H 0.23 6.85 7.80 -4.42 -0.03 6.81 16 29 H 0.07 3.43 7.06 -2.39 -0.02 3.41 16 30 H 0.11 4.29 4.36 -2.39 -0.01 4.28 16 31 H 0.28 12.82 8.31 -92.71 -0.77 12.05 16 32 H 0.14 5.01 4.12 -2.91 -0.01 5.00 16 33 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.20 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.21 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.20 2.45 8.06 -2.91 -0.02 2.42 16 38 H 0.10 4.51 7.95 -2.91 -0.02 4.49 16 Total: -1.00 -76.06 337.93 4.46 -71.60 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 1.11 Total: 21.19 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 8.20 Total: 2.34 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -6.49 Total: -91.37 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -0.40 Total: -46.99 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.04 Total: 43.23 kcal Total: -76.06 4.46 -71.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491023041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.471 kcal (2) G-P(sol) polarization free energy of solvation -76.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds