Wall clock time and date at job start Tue Mar 31 2020 14:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47353 * 2 1 4 4 N 1.46498 * 109.47537 * 179.97438 * 3 2 1 5 5 C 1.36748 * 119.99812 * 269.99689 * 4 3 2 6 6 H 1.08000 * 119.99505 * 137.28682 * 5 4 3 7 7 C 1.39085 * 120.00113 * 317.28617 * 5 4 3 8 8 N 1.31340 * 120.00226 * 351.19805 * 7 5 4 9 9 Si 1.86799 * 119.99955 * 171.19290 * 7 5 4 10 10 H 1.48501 * 109.47089 * 90.00122 * 9 7 5 11 11 H 1.48502 * 109.47154 * 209.99853 * 9 7 5 12 12 H 1.48496 * 109.47448 * 330.00470 * 9 7 5 13 13 C 1.34780 * 120.00132 * 89.99798 * 4 3 2 14 14 O 1.21785 * 119.99568 * 354.49838 * 13 4 3 15 15 C 1.41800 * 120.00054 * 174.50994 * 13 4 3 16 16 C 1.35140 * 119.99798 * 186.60108 * 15 13 4 17 17 C 1.46942 * 120.00176 * 8.66818 * 16 15 13 18 18 C 1.40021 * 120.11005 * 45.90902 * 17 16 15 19 19 C 1.37660 * 119.90159 * 179.97438 * 18 17 16 20 20 C 1.39007 * 120.13154 * 0.02562 * 19 18 17 21 21 O 1.35761 * 119.88568 * 180.02562 * 20 19 18 22 22 C 1.42896 * 117.00451 * 359.97438 * 21 20 19 23 23 C 1.39111 * 120.22521 * 359.70600 * 20 19 18 24 24 Cl 1.73600 * 119.95334 * 180.28210 * 23 20 19 25 25 C 1.37770 * 120.09603 * 0.54765 * 23 20 19 26 26 H 1.09000 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47111 * 300.00578 * 1 2 3 28 28 H 1.09004 * 109.46546 * 60.00361 * 1 2 3 29 29 H 1.08998 * 109.47629 * 239.99415 * 2 1 3 30 30 H 1.09008 * 109.47018 * 119.99561 * 2 1 3 31 31 H 1.08998 * 109.47231 * 59.99171 * 3 2 1 32 32 H 1.09008 * 109.46700 * 299.99755 * 3 2 1 33 33 H 0.96998 * 120.00263 * 185.01756 * 8 7 5 34 34 H 1.07999 * 120.00033 * 6.59281 * 15 13 4 35 35 H 1.07997 * 119.99587 * 188.67372 * 16 15 13 36 36 H 1.07996 * 120.04545 * 359.94963 * 18 17 16 37 37 H 1.07998 * 119.93318 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47117 * 300.00206 * 22 21 20 39 39 H 1.09003 * 109.47203 * 59.99836 * 22 21 20 40 40 H 1.08994 * 109.47782 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.06679 * 179.75173 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1883 1.4428 1.1852 6 1 5.0534 0.8084 1.3097 7 6 3.7690 2.2600 2.2296 8 7 2.8293 3.1549 2.0268 9 14 4.5425 2.0848 3.9209 10 1 5.7214 2.9823 4.0215 11 1 3.5486 2.4549 4.9605 12 1 4.9724 0.6783 4.1254 13 6 4.1795 1.4423 -1.1663 14 8 3.5752 1.3410 -2.2188 15 6 5.5926 1.5599 -1.1685 16 6 6.2576 1.6939 -2.3373 17 6 5.5131 1.9092 -3.5858 18 6 4.4744 2.8470 -3.6314 19 6 3.7801 3.0456 -4.8034 20 6 4.1079 2.3168 -5.9407 21 8 3.4203 2.5170 -7.0940 22 6 2.3743 3.4902 -7.0652 23 6 5.1426 1.3877 -5.9030 24 17 5.5509 0.4866 -7.3295 25 6 5.8402 1.1777 -4.7336 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 2.5878 3.7735 2.7338 34 1 6.1374 1.5423 -0.2362 35 1 7.3362 1.6428 -2.3538 36 1 4.2180 3.4134 -2.7483 37 1 2.9785 3.7686 -4.8390 38 1 1.6279 3.1996 -6.3259 39 1 2.7897 4.4623 -6.7993 40 1 1.9077 3.5515 -8.0483 41 1 6.6407 0.4534 -4.7038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491213113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:46 Heat of formation + Delta-G solvation = -24.364090 kcal Electronic energy + Delta-G solvation = -25158.467311 eV Core-core repulsion = 21451.766531 eV Total energy + Delta-G solvation = -3706.700781 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.94503 -38.97723 -37.24955 -36.12378 -35.15697 -33.05919 -32.46697 -31.38565 -30.49388 -28.99547 -27.08240 -25.98543 -24.81268 -22.97451 -22.13588 -21.17301 -20.07269 -18.86973 -18.02627 -16.90950 -16.42760 -15.90454 -15.62582 -15.04202 -14.88639 -14.43215 -14.13768 -13.86025 -13.79080 -13.65577 -13.30316 -13.09503 -12.68899 -12.55904 -12.29856 -11.86537 -11.62359 -11.47708 -11.32617 -11.30852 -11.23256 -11.03245 -10.99813 -10.74881 -10.63630 -10.49758 -10.35343 -10.29141 -9.78211 -9.20471 -8.92613 -8.64099 -8.35332 -7.46210 -7.16170 -6.44947 -4.23895 1.30408 1.70393 2.33723 2.54389 3.04871 3.12945 3.15180 3.40658 3.97769 4.15300 4.41808 4.85305 4.96482 5.04492 5.12608 5.22532 5.31305 5.45524 5.54759 5.65773 5.75435 5.79114 5.84000 5.94564 6.07349 6.18942 6.26995 6.39886 6.52142 6.53694 6.62054 6.67578 6.79693 6.82051 6.96423 7.03403 7.07107 7.22228 7.27347 7.50219 7.54128 7.89854 8.29215 8.96225 9.42425 9.87408 10.52739 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.003559 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.060021 B = 7865.819803 C = 8516.031015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.109 3.891 4 N -0.421 5.421 5 C -0.337 4.337 6 H 0.089 0.911 7 C 0.047 3.953 8 N -0.863 5.863 9 Si 0.919 3.081 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.481 3.519 14 O -0.594 6.594 15 C -0.147 4.147 16 C -0.086 4.086 17 C -0.062 4.062 18 C 0.028 3.972 19 C -0.213 4.213 20 C 0.135 3.865 21 O -0.312 6.312 22 C 0.028 3.972 23 C -0.084 4.084 24 Cl -0.080 7.080 25 C -0.068 4.068 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.272 0.728 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.956 0.464 -9.049 9.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.015 4.015 4 N -0.136 5.136 5 C -0.465 4.465 6 H 0.106 0.894 7 C -0.160 4.160 8 N -0.499 5.499 9 Si 0.745 3.255 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.274 3.726 14 O -0.483 6.483 15 C -0.167 4.167 16 C -0.108 4.108 17 C -0.063 4.063 18 C 0.009 3.991 19 C -0.232 4.232 20 C 0.089 3.911 21 O -0.225 6.225 22 C -0.067 4.067 23 C -0.111 4.111 24 Cl -0.052 7.052 25 C -0.087 4.087 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.495 0.353 -9.660 9.781 hybrid contribution 0.148 -0.006 1.223 1.232 sum 1.643 0.346 -8.437 8.602 Atomic orbital electron populations 1.21650 0.96690 1.00372 1.01286 1.21804 0.94597 0.99472 1.01195 1.21581 0.81642 0.94618 1.03646 1.43499 1.05037 1.60386 1.04635 1.19448 1.13206 1.24153 0.89733 0.89364 1.25537 0.95941 0.94294 1.00214 1.69665 1.28784 1.17027 1.34434 0.86053 0.78920 0.79069 0.81502 1.20034 1.20649 1.19223 1.17367 0.88452 0.82661 0.84164 1.90712 1.70708 1.56389 1.30454 1.22411 0.96001 1.00178 0.98150 1.22015 0.98219 0.99510 0.91028 1.18647 0.97485 0.97538 0.92610 1.20988 0.89686 0.93223 0.95214 1.20911 1.04745 1.04708 0.92852 1.18692 0.91817 0.94832 0.85796 1.86044 1.46831 1.58146 1.31466 1.23026 0.89173 0.91046 1.03442 1.19731 1.01092 1.00795 0.89492 1.98309 1.93204 1.74225 1.39439 1.20798 0.99101 0.98987 0.89818 0.93718 0.93015 0.93253 0.93013 0.92468 0.87062 0.93065 0.91713 0.85025 0.85806 0.85830 0.85425 0.92502 0.92744 0.88565 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.04 16 2 C -0.13 -2.70 6.26 -26.73 -0.17 -2.87 16 3 C 0.11 2.51 4.94 -4.04 -0.02 2.49 16 4 N -0.42 -10.09 2.49 -118.00 -0.29 -10.39 16 5 C -0.34 -8.07 8.19 -15.05 -0.12 -8.19 16 6 H 0.09 2.02 7.09 -52.49 -0.37 1.65 16 7 C 0.05 1.10 5.21 -17.45 -0.09 1.01 16 8 N -0.86 -21.53 11.08 55.50 0.61 -20.91 16 9 Si 0.92 18.40 29.57 -169.99 -5.03 13.37 16 10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 13 C 0.48 11.07 6.55 -14.90 -0.10 10.98 16 14 O -0.59 -14.32 11.49 5.11 0.06 -14.26 16 15 C -0.15 -2.88 9.08 -39.32 -0.36 -3.24 16 16 C -0.09 -1.47 9.80 -37.16 -0.36 -1.83 16 17 C -0.06 -1.11 4.48 -105.05 -0.47 -1.58 16 18 C 0.03 0.51 6.57 -39.12 -0.26 0.26 16 19 C -0.21 -3.60 9.01 -39.51 -0.36 -3.96 16 20 C 0.13 2.27 6.69 -38.97 -0.26 2.01 16 21 O -0.31 -4.74 9.94 -18.99 -0.19 -4.93 16 22 C 0.03 0.31 9.81 101.05 0.99 1.30 16 23 C -0.08 -1.42 6.32 -39.43 -0.25 -1.67 16 24 Cl -0.08 -1.22 28.49 -51.86 -1.48 -2.70 16 25 C -0.07 -1.13 9.56 -39.10 -0.37 -1.51 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 31 H 0.11 2.74 5.40 -51.93 -0.28 2.46 16 32 H 0.05 1.22 7.50 -51.92 -0.39 0.83 16 33 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 34 H 0.13 2.46 6.58 -52.49 -0.35 2.11 16 35 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.12 2.46 7.09 -52.49 -0.37 2.08 16 37 H 0.13 1.88 6.27 -52.49 -0.33 1.55 16 38 H 0.06 0.62 7.65 -51.93 -0.40 0.23 16 39 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -27.63 355.27 -8.19 -35.82 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.40 Total: 7.47 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.83 Total: -8.83 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.32 Total: -31.30 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.13 Total: -19.19 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.48 Total: -2.70 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.63 -8.19 -35.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491213113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.453 kcal (2) G-P(sol) polarization free energy of solvation -27.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds