Wall clock time and date at job start Tue Mar 31 2020 14:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47353 * 2 1 4 4 N 1.46498 * 109.47537 * 179.97438 * 3 2 1 5 5 C 1.36748 * 119.99812 * 269.99689 * 4 3 2 6 6 H 1.08000 * 119.99505 * 137.28682 * 5 4 3 7 7 C 1.39085 * 120.00113 * 317.28617 * 5 4 3 8 8 N 1.31340 * 120.00226 * 351.19805 * 7 5 4 9 9 Si 1.86799 * 119.99955 * 171.19290 * 7 5 4 10 10 H 1.48501 * 109.47089 * 90.00122 * 9 7 5 11 11 H 1.48502 * 109.47154 * 209.99853 * 9 7 5 12 12 H 1.48496 * 109.47448 * 330.00470 * 9 7 5 13 13 C 1.34780 * 120.00132 * 89.99798 * 4 3 2 14 14 O 1.21785 * 119.99568 * 354.49838 * 13 4 3 15 15 C 1.41800 * 120.00054 * 174.50994 * 13 4 3 16 16 C 1.35140 * 119.99798 * 186.60108 * 15 13 4 17 17 C 1.46942 * 120.00176 * 8.66818 * 16 15 13 18 18 C 1.40021 * 120.11005 * 45.90902 * 17 16 15 19 19 C 1.37660 * 119.90159 * 179.97438 * 18 17 16 20 20 C 1.39007 * 120.13154 * 0.02562 * 19 18 17 21 21 O 1.35761 * 119.88568 * 180.02562 * 20 19 18 22 22 C 1.42896 * 117.00451 * 359.97438 * 21 20 19 23 23 C 1.39111 * 120.22521 * 359.70600 * 20 19 18 24 24 Cl 1.73600 * 119.95334 * 180.28210 * 23 20 19 25 25 C 1.37770 * 120.09603 * 0.54765 * 23 20 19 26 26 H 1.09000 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47111 * 300.00578 * 1 2 3 28 28 H 1.09004 * 109.46546 * 60.00361 * 1 2 3 29 29 H 1.08998 * 109.47629 * 239.99415 * 2 1 3 30 30 H 1.09008 * 109.47018 * 119.99561 * 2 1 3 31 31 H 1.08998 * 109.47231 * 59.99171 * 3 2 1 32 32 H 1.09008 * 109.46700 * 299.99755 * 3 2 1 33 33 H 0.96998 * 120.00263 * 185.01756 * 8 7 5 34 34 H 1.07999 * 120.00033 * 6.59281 * 15 13 4 35 35 H 1.07997 * 119.99587 * 188.67372 * 16 15 13 36 36 H 1.07996 * 120.04545 * 359.94963 * 18 17 16 37 37 H 1.07998 * 119.93318 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47117 * 300.00206 * 22 21 20 39 39 H 1.09003 * 109.47203 * 59.99836 * 22 21 20 40 40 H 1.08994 * 109.47782 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.06679 * 179.75173 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1883 1.4428 1.1852 6 1 5.0534 0.8084 1.3097 7 6 3.7690 2.2600 2.2296 8 7 2.8293 3.1549 2.0268 9 14 4.5425 2.0848 3.9209 10 1 5.7214 2.9823 4.0215 11 1 3.5486 2.4549 4.9605 12 1 4.9724 0.6783 4.1254 13 6 4.1795 1.4423 -1.1663 14 8 3.5752 1.3410 -2.2188 15 6 5.5926 1.5599 -1.1685 16 6 6.2576 1.6939 -2.3373 17 6 5.5131 1.9092 -3.5858 18 6 4.4744 2.8470 -3.6314 19 6 3.7801 3.0456 -4.8034 20 6 4.1079 2.3168 -5.9407 21 8 3.4203 2.5170 -7.0940 22 6 2.3743 3.4902 -7.0652 23 6 5.1426 1.3877 -5.9030 24 17 5.5509 0.4866 -7.3295 25 6 5.8402 1.1777 -4.7336 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 2.5878 3.7735 2.7338 34 1 6.1374 1.5423 -0.2362 35 1 7.3362 1.6428 -2.3538 36 1 4.2180 3.4134 -2.7483 37 1 2.9785 3.7686 -4.8390 38 1 1.6279 3.1996 -6.3259 39 1 2.7897 4.4623 -6.7993 40 1 1.9077 3.5515 -8.0483 41 1 6.6407 0.4534 -4.7038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491213113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:45 Heat of formation + Delta-G solvation = -37.192867 kcal Electronic energy + Delta-G solvation = -25159.023609 eV Core-core repulsion = 21451.766531 eV Total energy + Delta-G solvation = -3707.257078 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30605 -40.54537 -38.59145 -37.44388 -36.80396 -34.69520 -33.97854 -33.12994 -31.82454 -30.30479 -28.22158 -27.61237 -26.50836 -24.42330 -23.45678 -22.66769 -21.72025 -20.55011 -19.28459 -18.40882 -18.11681 -17.25765 -16.73782 -16.64987 -16.49469 -15.96110 -15.72977 -15.41288 -15.16427 -14.89293 -14.84279 -14.39576 -14.15443 -13.92117 -13.87391 -13.26076 -13.14142 -12.94965 -12.92412 -12.66439 -12.59284 -12.53647 -12.35356 -12.14487 -12.06324 -11.99044 -11.85325 -11.70846 -11.51143 -10.97705 -10.34102 -10.27857 -9.78319 -9.23834 -8.58223 -8.23132 -6.09387 -0.10887 0.35948 0.92977 1.25154 1.47479 1.50019 1.59903 2.29912 2.31205 2.68077 2.81121 3.16727 3.22836 3.81599 3.87512 4.07896 4.18195 4.30598 4.32502 4.36954 4.38987 4.44048 4.54524 4.62303 4.70393 4.74978 4.84808 4.89436 4.98721 5.05455 5.09374 5.21227 5.21897 5.33740 5.41066 5.45996 5.52152 5.64686 5.70852 5.84840 6.11611 6.31986 6.48162 7.15455 7.65701 8.10238 8.75091 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.003559 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.060021 B = 7865.819803 C = 8516.031015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.113 3.887 4 N -0.441 5.441 5 C -0.349 4.349 6 H 0.095 0.905 7 C 0.006 3.994 8 N -0.897 5.897 9 Si 0.984 3.016 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.261 1.261 13 C 0.477 3.523 14 O -0.613 6.613 15 C -0.187 4.187 16 C -0.045 4.045 17 C -0.087 4.087 18 C 0.012 3.988 19 C -0.218 4.218 20 C 0.135 3.865 21 O -0.321 6.321 22 C 0.019 3.981 23 C -0.097 4.097 24 Cl -0.065 7.065 25 C -0.062 4.062 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.031 0.969 33 H 0.272 0.728 34 H 0.139 0.861 35 H 0.169 0.831 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.126 0.874 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.962 -0.179 -9.848 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C -0.010 4.010 4 N -0.157 5.157 5 C -0.477 4.477 6 H 0.112 0.888 7 C -0.197 4.197 8 N -0.534 5.534 9 Si 0.808 3.192 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.185 1.185 13 C 0.271 3.729 14 O -0.503 6.503 15 C -0.207 4.207 16 C -0.066 4.066 17 C -0.088 4.088 18 C -0.007 4.007 19 C -0.237 4.237 20 C 0.088 3.912 21 O -0.234 6.234 22 C -0.075 4.075 23 C -0.124 4.124 24 Cl -0.036 7.036 25 C -0.080 4.080 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.186 0.814 36 H 0.118 0.882 37 H 0.160 0.840 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.144 0.856 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.507 -0.293 -10.479 10.779 hybrid contribution -0.180 0.232 1.186 1.222 sum 2.327 -0.061 -9.293 9.580 Atomic orbital electron populations 1.21597 0.93879 1.02127 1.01621 1.21691 0.97035 0.97325 1.00010 1.21458 0.82010 0.95882 1.01697 1.43689 1.05211 1.61654 1.05165 1.19705 1.13534 1.24431 0.90016 0.88779 1.26305 0.96281 0.93742 1.03358 1.69787 1.30214 1.17981 1.35421 0.85051 0.77939 0.79208 0.77001 1.19467 1.20986 1.18526 1.17926 0.89896 0.81502 0.83609 1.90688 1.71593 1.57080 1.30946 1.22306 0.94289 1.04504 0.99614 1.22486 1.00166 0.94403 0.89537 1.18852 0.98048 0.98280 0.93602 1.20906 0.90691 0.94034 0.95036 1.21067 1.04912 1.05148 0.92560 1.18824 0.91814 0.94407 0.86160 1.86040 1.47525 1.59224 1.30633 1.23351 0.88220 0.90653 1.05304 1.19960 1.01187 1.01003 0.90269 1.98310 1.93055 1.73770 1.38497 1.21028 0.99258 0.98657 0.89068 0.91206 0.92582 0.93022 0.94529 0.93050 0.88636 0.95076 0.91773 0.84363 0.81417 0.88212 0.83959 0.92731 0.91529 0.85570 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.91 71.98 0.71 -3.77 16 2 C -0.12 -5.09 6.26 30.59 0.19 -4.90 16 3 C 0.11 5.46 4.94 86.38 0.43 5.88 16 4 N -0.44 -21.89 2.49 -645.42 -1.61 -23.50 16 5 C -0.35 -17.01 8.19 84.13 0.69 -16.32 16 6 H 0.09 4.35 7.09 -2.91 -0.02 4.33 16 7 C 0.01 0.29 5.21 84.97 0.44 0.73 16 8 N -0.90 -45.99 11.08 21.69 0.24 -45.75 16 9 Si 0.98 37.79 29.57 68.60 2.03 39.82 16 10 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 11 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 13 C 0.48 22.56 6.55 85.12 0.56 23.12 16 14 O -0.61 -30.43 11.49 -4.62 -0.05 -30.48 16 15 C -0.19 -7.33 9.08 22.44 0.20 -7.13 16 16 C -0.05 -1.46 9.80 23.84 0.23 -1.23 16 17 C -0.09 -3.04 4.48 -20.14 -0.09 -3.13 16 18 C 0.01 0.46 6.57 22.57 0.15 0.61 16 19 C -0.22 -7.34 9.01 22.32 0.20 -7.14 16 20 C 0.13 4.39 6.69 22.66 0.15 4.54 16 21 O -0.32 -9.24 9.94 -90.88 -0.90 -10.15 16 22 C 0.02 0.38 9.81 113.37 1.11 1.49 16 23 C -0.10 -3.12 6.32 22.37 0.14 -2.97 16 24 Cl -0.06 -1.84 28.49 -2.72 -0.08 -1.92 16 25 C -0.06 -1.93 9.56 22.58 0.22 -1.71 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.10 4.92 5.40 -2.39 -0.01 4.90 16 32 H 0.03 1.57 7.50 -2.38 -0.02 1.55 16 33 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 34 H 0.14 5.15 6.58 -2.91 -0.02 5.13 16 35 H 0.17 3.86 8.06 -2.91 -0.02 3.83 16 36 H 0.10 4.17 7.09 -2.91 -0.02 4.15 16 37 H 0.14 4.18 6.27 -2.91 -0.02 4.16 16 38 H 0.05 1.13 7.65 -2.39 -0.02 1.11 16 39 H 0.07 1.18 7.65 -2.39 -0.02 1.16 16 40 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -60.85 355.27 6.00 -54.85 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 1.04 Total: 29.06 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 5.34 Total: -11.93 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -1.37 Total: -69.25 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.96 Total: -40.63 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -60.85 6.00 -54.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491213113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.655 kcal (2) G-P(sol) polarization free energy of solvation -60.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds