Wall clock time and date at job start Tue Mar 31 2020 14:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47030 * 2 1 4 4 N 1.46503 * 109.46746 * 179.97438 * 3 2 1 5 5 C 1.36749 * 119.99973 * 269.99517 * 4 3 2 6 6 H 1.07995 * 119.99914 * 10.01498 * 5 4 3 7 7 C 1.39086 * 119.99953 * 190.01354 * 5 4 3 8 8 N 1.31342 * 120.00495 * 267.25464 * 7 5 4 9 9 Si 1.86809 * 119.99897 * 87.25775 * 7 5 4 10 10 H 1.48494 * 109.46853 * 59.99593 * 9 7 5 11 11 H 1.48500 * 109.47047 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46829 * 300.00044 * 9 7 5 13 13 C 1.34780 * 119.99990 * 90.00252 * 4 3 2 14 14 O 1.21774 * 119.99645 * 174.88015 * 13 4 3 15 15 C 1.41802 * 119.99994 * 355.15417 * 13 4 3 16 16 C 1.35129 * 120.00252 * 184.72213 * 15 13 4 17 17 C 1.46948 * 120.00609 * 185.43206 * 16 15 13 18 18 C 1.40009 * 120.11289 * 185.36862 * 17 16 15 19 19 C 1.37664 * 119.89790 * 179.97438 * 18 17 16 20 20 C 1.38999 * 120.13359 * 0.02562 * 19 18 17 21 21 O 1.35769 * 119.88647 * 180.02562 * 20 19 18 22 22 C 1.42901 * 117.00167 * 0.02562 * 21 20 19 23 23 C 1.39107 * 120.23020 * 359.97438 * 20 19 18 24 24 Cl 1.73594 * 119.95636 * 180.02562 * 23 20 19 25 25 C 1.37774 * 120.09095 * 359.74398 * 23 20 19 26 26 H 1.08998 * 109.46592 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47285 * 300.00050 * 1 2 3 28 28 H 1.09004 * 109.46998 * 60.00430 * 1 2 3 29 29 H 1.08997 * 109.47285 * 239.99950 * 2 1 3 30 30 H 1.08996 * 109.47160 * 119.99823 * 2 1 3 31 31 H 1.08997 * 109.47127 * 59.99853 * 3 2 1 32 32 H 1.09004 * 109.46879 * 299.99642 * 3 2 1 33 33 H 0.97000 * 120.00346 * 185.01362 * 8 7 5 34 34 H 1.08003 * 119.99868 * 4.72184 * 15 13 4 35 35 H 1.08001 * 119.99662 * 5.42547 * 16 15 13 36 36 H 1.07994 * 120.05228 * 359.95325 * 18 17 16 37 37 H 1.08008 * 119.93131 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47040 * 59.99249 * 22 21 20 39 39 H 1.08998 * 109.47254 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.46330 * 299.99568 * 22 21 20 41 41 H 1.07998 * 120.06583 * 180.27210 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1883 1.4427 1.1852 6 1 3.6602 1.2803 2.1131 7 6 5.5633 1.6521 1.1949 8 7 6.3840 0.6274 1.1553 9 14 6.2428 3.3908 1.2643 10 1 5.7695 4.0581 2.5036 11 1 7.7270 3.3425 1.2646 12 1 5.7720 4.1538 0.0805 13 6 4.1794 1.4423 -1.1663 14 8 5.3936 1.5364 -1.1679 15 6 3.4747 1.3385 -2.3925 16 6 4.1544 1.2422 -3.5564 17 6 3.4290 1.2548 -4.8342 18 6 4.1173 1.0428 -6.0349 19 6 3.4332 1.0550 -7.2294 20 6 2.0613 1.2780 -7.2456 21 8 1.3915 1.2886 -8.4266 22 6 2.1598 1.0632 -9.6102 23 6 1.3720 1.4894 -6.0560 24 17 -0.3415 1.7665 -6.0844 25 6 2.0463 1.4733 -4.8547 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 7.3403 0.7686 1.2353 34 1 2.3947 1.3364 -2.3961 35 1 5.2310 1.1559 -3.5475 36 1 5.1833 0.8701 -6.0239 37 1 3.9637 0.8919 -8.1560 38 1 2.6370 0.0848 -9.5528 39 1 1.5045 1.0970 -10.4806 40 1 2.9237 1.8354 -9.6999 41 1 1.5101 1.6330 -3.9309 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491213114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:49 Heat of formation + Delta-G solvation = -11.038730 kcal Electronic energy + Delta-G solvation = -24564.179137 eV Core-core repulsion = 20858.056187 eV Total energy + Delta-G solvation = -3706.122950 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -40.13523 -38.75035 -37.60649 -36.33979 -35.02477 -33.58492 -32.43170 -31.67107 -30.90805 -28.99809 -27.48850 -26.16564 -24.87734 -22.99820 -22.57317 -21.29790 -20.51981 -18.62578 -18.28998 -17.20361 -16.24406 -15.98324 -15.90558 -15.39040 -14.85133 -14.72661 -14.31700 -14.02077 -13.84818 -13.69868 -13.43673 -13.30622 -12.84012 -12.53218 -12.36180 -12.23112 -11.79517 -11.63030 -11.61531 -11.57111 -11.36547 -11.27680 -10.99475 -10.93291 -10.73534 -10.61365 -10.52746 -10.28111 -10.06896 -9.27411 -8.81194 -8.77841 -8.28911 -7.48745 -7.41421 -7.06006 -3.38662 0.91116 1.24737 2.23666 2.47896 3.13237 3.28813 3.41579 3.52840 3.86935 4.09125 4.48714 4.69328 4.79659 4.83552 4.95795 4.98228 5.06465 5.22668 5.28809 5.32106 5.38582 5.49877 5.51799 5.60999 5.74983 5.81734 5.96703 6.09412 6.12238 6.21241 6.22728 6.29098 6.34830 6.54573 6.59141 6.75597 6.79459 7.15369 7.20405 7.23918 7.31444 7.86975 8.55634 9.12455 9.36999 9.95677 10.34409 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.003455 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.608618 B = 8102.190758 C = 9350.856755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.101 3.899 4 N -0.386 5.386 5 C -0.454 4.454 6 H 0.108 0.892 7 C 0.214 3.786 8 N -0.678 5.678 9 Si 0.841 3.159 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.264 1.264 13 C 0.386 3.614 14 O -0.599 6.599 15 C -0.137 4.137 16 C -0.134 4.134 17 C -0.044 4.044 18 C -0.080 4.080 19 C -0.190 4.190 20 C 0.109 3.891 21 O -0.309 6.309 22 C 0.028 3.972 23 C -0.056 4.056 24 Cl -0.068 7.068 25 C -0.086 4.086 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.282 0.718 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.105 -0.637 -13.768 16.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.023 4.023 4 N -0.098 5.098 5 C -0.570 4.570 6 H 0.126 0.874 7 C -0.023 4.023 8 N -0.297 5.297 9 Si 0.661 3.339 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.189 1.189 13 C 0.189 3.811 14 O -0.491 6.491 15 C -0.158 4.158 16 C -0.156 4.156 17 C -0.045 4.045 18 C -0.099 4.099 19 C -0.209 4.209 20 C 0.063 3.937 21 O -0.222 6.222 22 C -0.067 4.067 23 C -0.083 4.083 24 Cl -0.039 7.039 25 C -0.105 4.105 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.073 0.927 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.794 -0.754 -13.824 16.401 hybrid contribution 0.378 0.740 -0.126 0.841 sum -8.416 -0.014 -13.950 16.292 Atomic orbital electron populations 1.21724 0.96082 1.01308 1.01464 1.21950 0.94855 0.97852 1.03076 1.21636 0.82485 0.96378 1.01846 1.43971 1.03856 1.55885 1.06065 1.18691 0.90612 1.61904 0.85823 0.87428 1.24964 0.95112 0.97341 0.84839 1.70641 1.05959 1.36033 1.17100 0.87526 0.77187 0.90346 0.78801 1.20497 1.21381 1.18869 1.16326 0.88091 0.93391 0.83323 1.90549 1.13273 1.60932 1.84340 1.22147 0.98691 1.00714 0.94286 1.21620 0.99461 1.05391 0.89136 1.19017 0.91865 0.99515 0.94064 1.21193 1.00126 0.97682 0.90860 1.21045 0.92275 1.07995 0.99547 1.18675 0.90518 0.99519 0.84989 1.86082 1.36553 1.86914 1.12692 1.23049 0.97195 1.00829 0.85671 1.19995 0.85304 1.10659 0.92371 1.98342 1.11694 1.94970 1.98881 1.21120 0.93847 0.99598 0.95906 0.92980 0.92846 0.92951 0.91937 0.91216 0.90829 0.91596 0.90637 0.87879 0.85481 0.85041 0.84954 0.92655 0.88336 0.92662 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.50 16 2 C -0.14 -2.27 6.25 -26.73 -0.17 -2.44 16 3 C 0.10 1.86 4.98 -4.04 -0.02 1.84 16 4 N -0.39 -9.27 2.62 -118.00 -0.31 -9.58 16 5 C -0.45 -11.85 9.47 -15.04 -0.14 -11.99 16 6 H 0.11 2.72 8.06 -52.49 -0.42 2.30 16 7 C 0.21 5.73 2.99 -17.45 -0.05 5.68 16 8 N -0.68 -18.42 13.40 55.50 0.74 -17.68 16 9 Si 0.84 20.73 28.54 -169.99 -4.85 15.88 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.26 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.39 9.81 7.36 -14.90 -0.11 9.70 16 14 O -0.60 -17.40 12.32 5.12 0.06 -17.34 16 15 C -0.14 -2.84 8.25 -39.33 -0.32 -3.17 16 16 C -0.13 -2.61 9.40 -37.16 -0.35 -2.96 16 17 C -0.04 -0.71 5.87 -105.05 -0.62 -1.33 16 18 C -0.08 -1.12 9.79 -39.13 -0.38 -1.50 16 19 C -0.19 -2.35 9.01 -39.51 -0.36 -2.71 16 20 C 0.11 1.49 6.69 -38.98 -0.26 1.22 16 21 O -0.31 -3.80 9.94 -19.02 -0.19 -3.99 16 22 C 0.03 0.22 9.81 101.05 0.99 1.21 16 23 C -0.06 -0.82 6.32 -39.43 -0.25 -1.07 16 24 Cl -0.07 -0.92 28.49 -51.86 -1.48 -2.40 16 25 C -0.09 -1.32 9.16 -39.09 -0.36 -1.68 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.08 7.97 -51.93 -0.41 0.67 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 32 H 0.07 1.08 6.24 -51.93 -0.32 0.76 16 33 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.10 1.84 4.26 -52.48 -0.22 1.61 16 35 H 0.13 2.67 7.49 -52.49 -0.39 2.28 16 36 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.13 1.24 6.27 -52.48 -0.33 0.91 16 38 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 41 H 0.14 2.03 6.23 -52.49 -0.33 1.70 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -31.25 358.81 -7.96 -39.21 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.32 Total: 1.18 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.03 Total: -10.69 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.43 Total: -27.26 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.13 Total: -21.33 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.85 Total: 15.88 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.48 Total: -2.40 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.25 -7.96 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491213114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.170 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds