Wall clock time and date at job start Tue Mar 31 2020 14:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47030 * 2 1 4 4 N 1.46503 * 109.46746 * 179.97438 * 3 2 1 5 5 C 1.36749 * 119.99973 * 269.99517 * 4 3 2 6 6 H 1.07995 * 119.99914 * 10.01498 * 5 4 3 7 7 C 1.39086 * 119.99953 * 190.01354 * 5 4 3 8 8 N 1.31342 * 120.00495 * 267.25464 * 7 5 4 9 9 Si 1.86809 * 119.99897 * 87.25775 * 7 5 4 10 10 H 1.48494 * 109.46853 * 59.99593 * 9 7 5 11 11 H 1.48500 * 109.47047 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46829 * 300.00044 * 9 7 5 13 13 C 1.34780 * 119.99990 * 90.00252 * 4 3 2 14 14 O 1.21774 * 119.99645 * 174.88015 * 13 4 3 15 15 C 1.41802 * 119.99994 * 355.15417 * 13 4 3 16 16 C 1.35129 * 120.00252 * 184.72213 * 15 13 4 17 17 C 1.46948 * 120.00609 * 185.43206 * 16 15 13 18 18 C 1.40009 * 120.11289 * 185.36862 * 17 16 15 19 19 C 1.37664 * 119.89790 * 179.97438 * 18 17 16 20 20 C 1.38999 * 120.13359 * 0.02562 * 19 18 17 21 21 O 1.35769 * 119.88647 * 180.02562 * 20 19 18 22 22 C 1.42901 * 117.00167 * 0.02562 * 21 20 19 23 23 C 1.39107 * 120.23020 * 359.97438 * 20 19 18 24 24 Cl 1.73594 * 119.95636 * 180.02562 * 23 20 19 25 25 C 1.37774 * 120.09095 * 359.74398 * 23 20 19 26 26 H 1.08998 * 109.46592 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47285 * 300.00050 * 1 2 3 28 28 H 1.09004 * 109.46998 * 60.00430 * 1 2 3 29 29 H 1.08997 * 109.47285 * 239.99950 * 2 1 3 30 30 H 1.08996 * 109.47160 * 119.99823 * 2 1 3 31 31 H 1.08997 * 109.47127 * 59.99853 * 3 2 1 32 32 H 1.09004 * 109.46879 * 299.99642 * 3 2 1 33 33 H 0.97000 * 120.00346 * 185.01362 * 8 7 5 34 34 H 1.08003 * 119.99868 * 4.72184 * 15 13 4 35 35 H 1.08001 * 119.99662 * 5.42547 * 16 15 13 36 36 H 1.07994 * 120.05228 * 359.95325 * 18 17 16 37 37 H 1.08008 * 119.93131 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47040 * 59.99249 * 22 21 20 39 39 H 1.08998 * 109.47254 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.46330 * 299.99568 * 22 21 20 41 41 H 1.07998 * 120.06583 * 180.27210 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1883 1.4427 1.1852 6 1 3.6602 1.2803 2.1131 7 6 5.5633 1.6521 1.1949 8 7 6.3840 0.6274 1.1553 9 14 6.2428 3.3908 1.2643 10 1 5.7695 4.0581 2.5036 11 1 7.7270 3.3425 1.2646 12 1 5.7720 4.1538 0.0805 13 6 4.1794 1.4423 -1.1663 14 8 5.3936 1.5364 -1.1679 15 6 3.4747 1.3385 -2.3925 16 6 4.1544 1.2422 -3.5564 17 6 3.4290 1.2548 -4.8342 18 6 4.1173 1.0428 -6.0349 19 6 3.4332 1.0550 -7.2294 20 6 2.0613 1.2780 -7.2456 21 8 1.3915 1.2886 -8.4266 22 6 2.1598 1.0632 -9.6102 23 6 1.3720 1.4894 -6.0560 24 17 -0.3415 1.7665 -6.0844 25 6 2.0463 1.4733 -4.8547 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 7.3403 0.7686 1.2353 34 1 2.3947 1.3364 -2.3961 35 1 5.2310 1.1559 -3.5475 36 1 5.1833 0.8701 -6.0239 37 1 3.9637 0.8919 -8.1560 38 1 2.6370 0.0848 -9.5528 39 1 1.5045 1.0970 -10.4806 40 1 2.9237 1.8354 -9.6999 41 1 1.5101 1.6330 -3.9309 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491213114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:48 Heat of formation + Delta-G solvation = -28.574510 kcal Electronic energy + Delta-G solvation = -24564.939545 eV Core-core repulsion = 20858.056187 eV Total energy + Delta-G solvation = -3706.883358 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21058 -40.48024 -38.72651 -37.43881 -36.69362 -35.31219 -34.03598 -33.22060 -32.01632 -30.30173 -28.40613 -27.63922 -26.40302 -24.38434 -23.73865 -22.63280 -21.96750 -20.24437 -19.34277 -18.85386 -17.76207 -17.24120 -16.81072 -16.75434 -16.67620 -16.21717 -15.52699 -15.39583 -15.24954 -14.98417 -14.73735 -14.43286 -14.29130 -14.22343 -13.93762 -13.39799 -13.29906 -12.93474 -12.82211 -12.81941 -12.66871 -12.49260 -12.39504 -12.24836 -12.14329 -12.05709 -11.91025 -11.80993 -11.54188 -10.81608 -10.59150 -10.07652 -9.92544 -9.46265 -9.05937 -8.76271 -5.37212 -0.36585 0.13387 1.05867 1.14665 1.31180 1.43847 1.51733 2.15899 2.24559 2.51303 2.66137 3.12247 3.26881 3.67922 3.78439 3.96661 4.05224 4.15649 4.20938 4.26868 4.34968 4.40659 4.43165 4.51218 4.60093 4.73209 4.76666 4.78680 4.80620 4.95552 5.06352 5.09292 5.22884 5.24238 5.26255 5.32692 5.50951 5.52132 5.61725 5.74591 6.03519 6.27314 6.70163 7.30140 7.56434 8.03709 8.45361 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.003455 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.608618 B = 8102.190758 C = 9350.856755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.098 3.902 4 N -0.399 5.399 5 C -0.520 4.520 6 H 0.100 0.900 7 C 0.209 3.791 8 N -0.710 5.710 9 Si 0.867 3.133 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.295 1.295 13 C 0.381 3.619 14 O -0.644 6.644 15 C -0.166 4.166 16 C -0.086 4.086 17 C -0.082 4.082 18 C -0.065 4.065 19 C -0.187 4.187 20 C 0.129 3.871 21 O -0.321 6.321 22 C 0.014 3.986 23 C -0.078 4.078 24 Cl -0.060 7.060 25 C -0.074 4.074 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.285 0.715 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.148 0.852 37 H 0.170 0.830 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.979 -0.665 -17.991 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C -0.026 4.026 4 N -0.112 5.112 5 C -0.635 4.635 6 H 0.117 0.883 7 C -0.026 4.026 8 N -0.330 5.330 9 Si 0.687 3.313 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.222 1.222 13 C 0.181 3.819 14 O -0.539 6.539 15 C -0.186 4.186 16 C -0.108 4.108 17 C -0.082 4.082 18 C -0.084 4.084 19 C -0.205 4.205 20 C 0.082 3.918 21 O -0.234 6.234 22 C -0.079 4.079 23 C -0.106 4.106 24 Cl -0.031 7.031 25 C -0.093 4.093 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.152 0.848 35 H 0.127 0.873 36 H 0.166 0.834 37 H 0.187 0.813 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.088 0.912 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.701 -0.788 -18.022 20.975 hybrid contribution 0.825 0.702 0.419 1.162 sum -9.876 -0.085 -17.604 20.185 Atomic orbital electron populations 1.21666 0.92693 1.02543 1.02745 1.21831 0.97600 0.96095 1.01299 1.21890 0.79688 0.97908 1.03072 1.43918 1.05858 1.56497 1.04890 1.18493 0.90730 1.67792 0.86471 0.88255 1.25343 0.95635 0.98260 0.83400 1.70712 1.06350 1.37211 1.18771 0.87086 0.76835 0.89280 0.78050 1.18446 1.21031 1.22246 1.17101 0.87901 0.91883 0.84984 1.90492 1.15555 1.62167 1.85656 1.22082 1.00189 1.03704 0.92657 1.21831 0.98826 0.99591 0.90555 1.18873 0.92491 1.03609 0.93275 1.21468 1.01060 0.95307 0.90517 1.21380 0.91854 1.06915 1.00374 1.18933 0.90940 0.96501 0.85448 1.86099 1.37816 1.86192 1.13287 1.23451 0.98045 1.02094 0.84358 1.20103 0.86004 1.11797 0.92665 1.98346 1.10934 1.94963 1.98864 1.21171 0.93415 0.98029 0.96644 0.91775 0.91857 0.91357 0.93134 0.93597 0.90198 0.89588 0.90306 0.84761 0.87342 0.83385 0.81256 0.91202 0.86129 0.91249 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.91 71.98 0.71 -2.52 16 2 C -0.13 -4.27 6.25 30.60 0.19 -4.08 16 3 C 0.10 3.63 4.98 86.38 0.43 4.06 16 4 N -0.40 -20.03 2.62 -645.42 -1.69 -21.72 16 5 C -0.52 -28.82 9.47 84.13 0.80 -28.02 16 6 H 0.10 5.43 8.06 -2.91 -0.02 5.41 16 7 C 0.21 11.78 2.99 84.97 0.25 12.03 16 8 N -0.71 -40.73 13.40 21.69 0.29 -40.44 16 9 Si 0.87 44.20 28.54 68.60 1.96 46.16 16 10 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 12 H -0.30 -16.46 7.11 99.48 0.71 -15.76 16 13 C 0.38 19.98 7.36 85.12 0.63 20.61 16 14 O -0.64 -39.05 12.32 -4.59 -0.06 -39.10 16 15 C -0.17 -6.85 8.25 22.43 0.18 -6.66 16 16 C -0.09 -3.27 9.40 23.84 0.22 -3.05 16 17 C -0.08 -2.45 5.87 -20.14 -0.12 -2.57 16 18 C -0.07 -1.57 9.79 22.56 0.22 -1.35 16 19 C -0.19 -3.70 9.01 22.32 0.20 -3.50 16 20 C 0.13 2.94 6.69 22.66 0.15 3.10 16 21 O -0.32 -6.41 9.94 -90.97 -0.90 -7.31 16 22 C 0.01 0.15 9.81 113.37 1.11 1.26 16 23 C -0.08 -2.03 6.32 22.37 0.14 -1.88 16 24 Cl -0.06 -1.45 28.49 -2.72 -0.08 -1.52 16 25 C -0.07 -2.05 9.16 22.59 0.21 -1.85 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.05 1.75 7.97 -2.39 -0.02 1.73 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 2.81 8.04 -2.39 -0.02 2.79 16 32 H 0.09 2.76 6.24 -2.38 -0.01 2.74 16 33 H 0.29 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.13 4.61 4.26 -2.91 -0.01 4.59 16 35 H 0.11 4.56 7.49 -2.91 -0.02 4.53 16 36 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.17 2.11 6.27 -2.91 -0.02 2.09 16 38 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 39 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.56 7.65 -2.39 -0.02 0.55 16 41 H 0.14 3.79 6.23 -2.91 -0.02 3.77 16 Total: -1.00 -72.32 358.81 5.90 -66.41 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 1.05 Total: 11.96 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 5.34 Total: -14.44 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -1.40 Total: -62.16 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.96 Total: -46.42 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.96 Total: 46.16 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.52 kcal Total: -72.32 5.90 -66.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491213114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.840 kcal (2) G-P(sol) polarization free energy of solvation -72.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds