Wall clock time and date at job start Tue Mar 31 2020 14:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46755 * 122.09340 * 3 2 1 5 5 C 1.36939 * 119.99853 * 264.32142 * 4 3 2 6 6 H 1.08001 * 119.99837 * 196.72205 * 5 4 3 7 7 C 1.38806 * 119.99698 * 16.72826 * 5 4 3 8 8 N 1.31622 * 120.00313 * 22.29599 * 7 5 4 9 9 Si 1.86807 * 119.99823 * 202.29308 * 7 5 4 10 10 H 1.48497 * 109.46829 * 90.00154 * 9 7 5 11 11 H 1.48497 * 109.47140 * 209.99991 * 9 7 5 12 12 H 1.48495 * 109.47145 * 330.00385 * 9 7 5 13 13 C 1.46505 * 120.00103 * 84.32869 * 4 3 2 14 14 C 1.50699 * 109.46906 * 269.99872 * 13 4 3 15 15 N 1.31674 * 118.96401 * 270.01505 * 14 13 4 16 16 C 1.32948 * 120.49376 * 180.02562 * 15 14 13 17 17 C 1.47245 * 134.87314 * 179.97438 * 16 15 14 18 18 C 1.39194 * 134.06795 * 359.97438 * 17 16 15 19 19 C 1.37831 * 119.74512 * 179.97438 * 18 17 16 20 20 C 1.38645 * 120.16173 * 359.82427 * 19 18 17 21 21 C 1.37831 * 120.61692 * 0.39664 * 20 19 18 22 22 C 1.39027 * 120.09900 * 359.56067 * 21 20 19 23 23 O 1.35111 * 132.34803 * 180.22772 * 22 21 20 24 24 C 1.34859 * 111.43217 * 180.02562 * 23 22 21 25 25 C 1.39749 * 133.44483 * 180.02562 * 24 23 22 26 26 O 1.35568 * 120.60229 * 359.97438 * 25 24 23 27 27 N 1.31967 * 118.96938 * 90.00253 * 14 13 4 28 28 H 4.40633 * 5.51507 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47232 * 2.09120 * 3 2 1 30 30 H 1.08998 * 109.46725 * 242.08899 * 3 2 1 31 31 H 0.96996 * 120.00300 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47174 * 149.99762 * 13 4 3 33 33 H 1.08999 * 109.47021 * 29.99553 * 13 4 3 34 34 H 1.07999 * 120.13088 * 359.97438 * 18 17 16 35 35 H 1.08005 * 119.91604 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.69007 * 180.21894 * 20 19 18 37 37 H 1.08001 * 119.94980 * 179.84309 * 21 20 19 38 38 H 0.96701 * 113.99257 * 90.00161 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7347 -1.1702 5 6 3.4730 0.0573 -2.3109 6 1 4.0757 0.5395 -3.0664 7 6 3.0421 -1.2491 -2.4963 8 7 1.9887 -1.6935 -1.8441 9 14 3.9572 -2.3766 -3.6714 10 1 5.0265 -3.0968 -2.9345 11 1 3.0088 -3.3598 -4.2536 12 1 4.5639 -1.5694 -4.7603 13 6 3.2592 2.1936 -1.1199 14 6 1.9691 2.8245 -1.5765 15 7 1.8092 3.0954 -2.8551 16 6 0.6836 3.6525 -3.2912 17 6 0.1775 4.0798 -4.6062 18 6 0.6976 4.0590 -5.8971 19 6 -0.0524 4.5490 -6.9446 20 6 -1.3215 5.0576 -6.7145 21 6 -1.8454 5.0877 -5.4400 22 6 -1.1051 4.5973 -4.3702 23 8 -1.3689 4.5020 -3.0486 24 6 -0.3371 3.9494 -2.3787 25 6 -0.1196 3.6415 -1.0330 26 8 -1.0696 3.9050 -0.1025 27 7 1.0348 3.0879 -0.6824 28 1 -1.0501 0.0001 0.0002 29 1 3.0098 -1.0261 -0.0375 30 1 3.0090 0.4819 0.9081 31 1 1.6873 -2.6062 -1.9739 32 1 4.0707 2.5113 -1.7746 33 1 3.4740 2.5048 -0.0976 34 1 1.6850 3.6603 -6.0774 35 1 0.3486 4.5346 -7.9473 36 1 -1.9040 5.4364 -7.5414 37 1 -2.8342 5.4886 -5.2728 38 1 -1.6924 3.1792 0.0401 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491285187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:28 Heat of formation + Delta-G solvation = 102.652509 kcal Electronic energy + Delta-G solvation = -26666.343598 eV Core-core repulsion = 22864.043177 eV Total energy + Delta-G solvation = -3802.300422 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.92119 -41.30836 -39.10440 -38.71117 -37.80878 -34.63775 -33.64591 -33.43157 -32.43392 -31.41994 -31.12702 -28.57661 -27.89548 -25.96824 -24.89866 -23.84835 -23.04953 -22.65166 -19.97524 -19.83790 -19.60078 -19.25088 -18.33504 -18.01094 -17.49654 -16.99379 -16.80477 -16.41730 -15.76327 -15.61976 -15.43852 -15.40271 -14.91648 -14.71675 -14.59561 -14.12146 -13.52829 -13.45941 -13.37505 -13.18996 -12.98195 -12.78060 -12.56716 -12.36627 -12.19721 -12.11181 -12.02501 -11.90082 -10.85963 -10.81474 -10.62611 -10.43396 -10.31539 -9.83220 -9.43046 -9.11952 -7.89819 -5.30919 -0.74293 -0.45761 0.31876 0.51805 1.13011 1.47371 1.49212 1.56867 2.09453 2.28816 2.46623 2.52141 2.54778 2.61813 2.72660 2.92934 3.24626 3.38200 3.59574 3.74223 3.82970 3.97253 4.08297 4.11741 4.19916 4.41334 4.43945 4.67714 4.72498 4.86951 4.92412 5.03970 5.11338 5.25648 5.28413 5.35025 5.39617 5.58148 5.67432 5.75418 5.90334 6.20085 6.30412 6.96379 7.04506 7.36701 7.70418 8.12663 9.11175 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.004970 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.019661 B = 5632.380072 C = 7052.836934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.109 4.109 3 C 0.266 3.734 4 N -0.574 5.574 5 C -0.261 4.261 6 H 0.079 0.921 7 C -0.043 4.043 8 N -0.912 5.912 9 Si 0.965 3.035 10 H -0.279 1.279 11 H -0.304 1.304 12 H -0.272 1.272 13 C 0.205 3.795 14 C 0.313 3.687 15 N -0.492 5.492 16 C 0.130 3.870 17 C -0.158 4.158 18 C -0.056 4.056 19 C -0.130 4.130 20 C -0.052 4.052 21 C -0.119 4.119 22 C 0.074 3.926 23 O -0.189 6.189 24 C -0.075 4.075 25 C 0.382 3.618 26 O -0.467 6.467 27 N -0.497 5.497 28 H 0.210 0.790 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.247 0.753 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.173 0.827 36 H 0.190 0.810 37 H 0.167 0.833 38 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 13.554 -6.901 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.112 4.112 3 C 0.141 3.859 4 N -0.292 5.292 5 C -0.390 4.390 6 H 0.097 0.903 7 C -0.240 4.240 8 N -0.556 5.556 9 Si 0.793 3.207 10 H -0.205 1.205 11 H -0.232 1.232 12 H -0.197 1.197 13 C 0.077 3.923 14 C 0.043 3.957 15 N -0.209 5.209 16 C -0.012 4.012 17 C -0.160 4.160 18 C -0.075 4.075 19 C -0.148 4.148 20 C -0.069 4.069 21 C -0.137 4.137 22 C 0.026 3.974 23 O -0.092 6.092 24 C -0.129 4.129 25 C 0.188 3.812 26 O -0.277 6.277 27 N -0.223 5.223 28 H 0.227 0.773 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.150 0.850 35 H 0.190 0.810 36 H 0.207 0.793 37 H 0.185 0.815 38 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -6.068 13.578 -6.425 16.201 hybrid contribution -1.155 -1.236 -0.528 1.772 sum -7.223 12.343 -6.953 15.902 Atomic orbital electron populations 1.24684 0.96146 1.06252 1.05596 1.24456 0.95908 0.95266 0.95579 1.17968 0.82822 0.97202 0.87880 1.44682 1.72805 0.99814 1.11856 1.19552 1.25268 0.95120 0.99100 0.90282 1.25631 0.97011 1.00356 1.00966 1.70310 1.22666 1.16152 1.46443 0.85309 0.77865 0.78649 0.78843 1.20500 1.23152 1.19709 1.20257 0.88111 0.82578 1.01404 1.25168 0.98046 0.89456 0.83006 1.67679 1.22293 1.12865 1.18081 1.20910 0.90000 0.95755 0.94499 1.19273 0.96095 1.07920 0.92720 1.20915 1.00729 0.96423 0.89442 1.21585 0.94831 0.98719 0.99652 1.21664 0.94942 0.94519 0.95823 1.20547 1.01525 1.03095 0.88501 1.20349 0.94381 0.99942 0.82678 1.83987 1.37490 1.69596 1.18097 1.21447 0.90563 1.05832 0.95024 1.18561 0.89043 0.91805 0.81758 1.84658 1.41052 1.44200 1.57824 1.68073 1.01251 1.13834 1.39144 0.77280 0.90501 0.90935 0.94334 0.89140 0.88268 0.85045 0.80986 0.79250 0.81502 0.71341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.15 19.25 74.32 1.43 -12.72 16 2 C -0.11 -5.35 10.86 31.13 0.34 -5.01 16 3 C 0.27 12.51 5.45 84.57 0.46 12.97 16 4 N -0.57 -27.64 2.49 -716.90 -1.79 -29.42 16 5 C -0.26 -13.80 9.66 84.03 0.81 -12.99 16 6 H 0.08 4.16 7.90 -2.91 -0.02 4.14 16 7 C -0.04 -2.32 4.85 84.86 0.41 -1.91 16 8 N -0.91 -52.15 9.49 21.65 0.21 -51.94 16 9 Si 0.96 44.36 29.61 68.60 2.03 46.39 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 C 0.21 8.51 6.12 85.63 0.52 9.04 16 14 C 0.31 13.78 6.91 138.73 0.96 14.74 16 15 N -0.49 -22.32 10.37 -177.73 -1.84 -24.17 16 16 C 0.13 5.43 7.59 41.79 0.32 5.75 16 17 C -0.16 -5.43 6.38 -20.18 -0.13 -5.56 16 18 C -0.06 -1.51 10.08 22.40 0.23 -1.29 16 19 C -0.13 -2.22 10.04 22.27 0.22 -1.99 16 20 C -0.05 -0.70 10.01 22.27 0.22 -0.48 16 21 C -0.12 -2.28 10.06 22.36 0.22 -2.05 16 22 C 0.07 2.23 7.35 22.96 0.17 2.40 16 23 O -0.19 -6.57 10.57 -16.15 -0.17 -6.74 16 24 C -0.08 -2.97 7.37 23.08 0.17 -2.80 16 25 C 0.38 14.76 7.86 84.92 0.67 15.43 16 26 O -0.47 -14.68 13.58 -88.75 -1.21 -15.88 16 27 N -0.50 -20.89 9.89 -300.37 -2.97 -23.87 16 28 H 0.21 8.04 7.80 -4.41 -0.03 8.01 16 29 H 0.08 3.96 6.42 -2.39 -0.02 3.94 16 30 H 0.07 2.92 7.97 -2.39 -0.02 2.90 16 31 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.09 3.55 8.02 -2.39 -0.02 3.53 16 33 H 0.10 3.56 7.95 -2.39 -0.02 3.54 16 34 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.42 9.38 9.06 -74.06 -0.67 8.71 16 Total: -1.00 -74.63 342.85 1.74 -72.89 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.46 Total: 19.22 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 7.03 Total: 13.52 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -6.39 Total: -129.40 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -1.38 Total: -22.62 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -74.63 1.74 -72.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491285187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.540 kcal (2) G-P(sol) polarization free energy of solvation -74.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds