Wall clock time and date at job start Tue Mar 31 2020 14:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46980 * 148.23109 * 3 2 1 5 5 N 1.46499 * 109.47284 * 28.23672 * 3 2 1 6 6 C 1.34771 * 120.00525 * 84.99475 * 5 3 2 7 7 O 1.21591 * 119.99774 * 0.02562 * 6 5 3 8 8 C 1.47641 * 120.00277 * 179.97438 * 6 5 3 9 9 C 1.40009 * 119.89199 * 359.72990 * 8 6 5 10 10 C 1.36321 * 120.10021 * 179.75671 * 9 8 6 11 11 C 1.40888 * 119.89573 * 0.51624 * 10 9 8 12 12 C 1.41109 * 120.10140 * 179.71422 * 11 10 9 13 13 H 1.08003 * 119.99424 * 204.64967 * 12 11 10 14 14 C 1.40227 * 120.00327 * 24.65448 * 12 11 10 15 15 N 1.30649 * 119.99675 * 17.86385 * 14 12 11 16 16 Si 1.86794 * 120.00050 * 197.85807 * 14 12 11 17 17 H 1.48503 * 109.46713 * 89.99818 * 16 14 12 18 18 H 1.48496 * 109.47423 * 209.99836 * 16 14 12 19 19 H 1.48502 * 109.47170 * 330.00607 * 16 14 12 20 20 C 1.40890 * 119.78979 * 359.73698 * 11 10 9 21 21 C 1.36315 * 119.89343 * 0.02562 * 20 11 10 22 22 C 1.50695 * 109.47151 * 268.23175 * 3 2 1 23 23 C 1.38244 * 119.97973 * 260.00124 * 22 3 2 24 24 C 1.38193 * 120.03204 * 179.97438 * 23 22 3 25 25 C 1.38457 * 119.97176 * 0.02562 * 24 23 22 26 26 F 1.35107 * 120.02833 * 179.97438 * 25 24 23 27 27 C 1.38466 * 119.95062 * 0.24762 * 25 24 23 28 28 C 1.38194 * 119.96888 * 359.47541 * 27 25 24 29 29 H 4.18744 * 15.03840 * 0.02562 * 4 2 1 30 30 H 0.97005 * 119.99898 * 264.99915 * 5 3 2 31 31 H 1.07997 * 119.94891 * 0.02562 * 9 8 6 32 32 H 1.08007 * 120.05079 * 180.23028 * 10 9 8 33 33 H 0.96998 * 119.99592 * 179.97438 * 15 14 12 34 34 H 1.07996 * 120.04928 * 179.97438 * 20 11 10 35 35 H 1.08002 * 119.94728 * 179.97438 * 21 20 11 36 36 H 1.08010 * 119.98002 * 359.97438 * 23 22 3 37 37 H 1.07997 * 120.01472 * 180.02562 * 24 23 22 38 38 H 1.07999 * 120.01053 * 179.74272 * 27 25 24 39 39 H 1.08005 * 119.98735 * 180.29663 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.8745 -0.5411 5 7 3.1349 -1.2160 -0.6535 6 6 3.2636 -1.2555 -1.9944 7 8 2.9743 -0.2813 -2.6619 8 6 3.7569 -2.4815 -2.6529 9 6 4.0957 -3.5997 -1.8816 10 6 4.5469 -4.7356 -2.4855 11 6 4.6823 -4.7793 -3.8872 12 6 5.1546 -5.9507 -4.5163 13 1 5.6310 -5.8895 -5.4837 14 6 5.0054 -7.1943 -3.8857 15 7 4.1453 -7.3339 -2.9122 16 14 6.0361 -8.6510 -4.4376 17 1 7.2999 -8.6866 -3.6585 18 1 5.2787 -9.9079 -4.2100 19 1 6.3494 -8.5165 -5.8830 20 6 4.3451 -3.6496 -4.6586 21 6 3.8902 -2.5199 -4.0461 22 6 3.1483 0.0447 1.4201 23 6 3.5741 1.2416 1.9654 24 6 4.0344 1.2833 3.2677 25 6 4.0696 0.1256 4.0264 26 9 4.5199 0.1651 5.2996 27 6 3.6483 -1.0737 3.4774 28 6 3.1830 -1.1118 2.1767 29 1 -1.0500 -0.0005 0.0009 30 1 3.3660 -1.9931 -0.1209 31 1 3.9953 -3.5639 -0.8069 32 1 4.8045 -5.5990 -1.8900 33 1 4.0418 -8.1942 -2.4763 34 1 4.4477 -3.6783 -5.7333 35 1 3.6318 -1.6533 -4.6366 36 1 3.5469 2.1445 1.3732 37 1 4.3665 2.2186 3.6936 38 1 3.6792 -1.9780 4.0669 39 1 2.8497 -2.0463 1.7498 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491349002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:23 Heat of formation + Delta-G solvation = 14.319095 kcal Electronic energy + Delta-G solvation = -24859.304269 eV Core-core repulsion = 21033.253462 eV Total energy + Delta-G solvation = -3826.050808 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.11771 -40.02083 -38.80375 -37.20220 -35.29179 -33.92001 -32.42095 -31.43256 -31.01405 -29.97891 -29.48290 -26.80664 -25.41005 -23.44782 -22.19605 -21.77901 -20.97314 -19.79732 -18.38523 -18.04280 -17.56675 -17.16825 -16.63926 -15.82397 -15.68989 -15.57101 -15.19537 -14.85233 -14.41185 -14.03538 -13.86227 -13.74417 -13.56244 -13.24219 -13.08643 -12.78328 -12.43391 -12.28567 -12.13639 -11.96659 -11.40970 -11.32599 -11.29244 -10.99612 -10.70237 -10.56183 -10.20237 -10.07632 -9.60270 -9.40103 -9.38302 -9.11088 -8.94318 -8.84820 -7.77069 -7.59644 -7.07956 -4.64789 0.80907 0.96056 2.16400 2.69757 2.86892 2.89099 2.93354 2.95792 2.99697 3.29547 3.70753 3.79262 3.83126 3.99455 4.40489 4.44919 4.50677 4.59884 4.72535 4.98282 5.06184 5.38157 5.52768 5.62487 5.67634 5.83907 5.92123 5.93294 5.97915 6.01612 6.21007 6.27549 6.58565 6.72078 6.75724 6.78643 6.98974 7.08535 7.38850 7.58822 7.66853 7.72807 7.81679 8.02344 8.10532 8.35450 8.58746 8.70686 8.95538 9.83956 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.002830 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.200325 B = 9893.079028 C =11156.271373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.189 4.189 3 C 0.301 3.699 4 H 0.116 0.884 5 N -0.733 5.733 6 C 0.576 3.424 7 O -0.569 6.569 8 C -0.285 4.285 9 C -0.062 4.062 10 C -0.178 4.178 11 C 0.129 3.871 12 C -0.441 4.441 13 H 0.086 0.914 14 C 0.074 3.926 15 N -0.770 5.770 16 Si 0.914 3.086 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.239 4.239 21 C -0.020 4.020 22 C -0.095 4.095 23 C -0.073 4.073 24 C -0.151 4.151 25 C 0.098 3.902 26 F -0.141 7.141 27 C -0.149 4.149 28 C -0.076 4.076 29 H 0.217 0.783 30 H 0.400 0.600 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.287 0.713 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 8.444 12.055 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.191 4.191 3 C 0.196 3.804 4 H 0.133 0.867 5 N -0.387 5.387 6 C 0.371 3.629 7 O -0.450 6.450 8 C -0.290 4.290 9 C -0.081 4.081 10 C -0.197 4.197 11 C 0.126 3.874 12 C -0.468 4.468 13 H 0.104 0.896 14 C -0.147 4.147 15 N -0.393 5.393 16 Si 0.738 3.262 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.258 4.258 21 C -0.039 4.039 22 C -0.095 4.095 23 C -0.092 4.092 24 C -0.170 4.170 25 C 0.079 3.921 26 F -0.119 7.119 27 C -0.167 4.167 28 C -0.095 4.095 29 H 0.234 0.766 30 H 0.237 0.763 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.701 8.938 11.776 14.882 hybrid contribution 0.241 -1.180 0.399 1.268 sum -1.460 7.759 12.175 14.511 Atomic orbital electron populations 1.24871 0.95787 0.99485 1.00391 1.23274 0.94345 1.01107 1.00356 1.16272 0.83380 0.91497 0.89283 0.86662 1.46068 1.69398 1.15303 1.07933 1.18654 0.75556 0.88265 0.80408 1.90646 1.52670 1.37667 1.63988 1.18816 1.21800 0.94225 0.94123 1.20451 0.97851 0.93286 0.96533 1.20974 1.06569 0.97209 0.94922 1.17794 0.85937 0.91810 0.91875 1.19880 1.31724 0.90775 1.04450 0.89632 1.26111 0.93754 1.01151 0.93729 1.69743 1.24961 1.26729 1.17879 0.86194 0.80317 0.79084 0.80615 1.18891 1.19996 1.18251 1.20720 1.11533 0.95461 0.98123 1.20355 0.94308 0.96491 0.92745 1.19825 1.00389 0.94150 0.95180 1.20880 0.96255 0.97683 0.94347 1.21109 1.03265 0.97788 0.94849 1.17759 0.99653 0.94995 0.79671 1.91505 1.86788 1.97272 1.36348 1.21138 1.01820 0.97258 0.96511 1.20878 0.97176 0.98509 0.92917 0.76595 0.76314 0.89466 0.86162 0.90181 0.88319 0.88049 0.84438 0.84428 0.84339 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 19.25 29.55 0.57 -1.91 16 2 C -0.19 -2.81 12.81 -37.12 -0.48 -3.29 16 3 C 0.30 4.29 2.62 -71.87 -0.19 4.11 16 4 H 0.12 1.70 7.44 -51.93 -0.39 1.32 16 5 N -0.73 -12.04 4.94 -58.71 -0.29 -12.33 16 6 C 0.58 11.96 7.71 -12.42 -0.10 11.86 16 7 O -0.57 -13.19 15.98 5.29 0.08 -13.10 16 8 C -0.29 -6.38 5.89 -104.73 -0.62 -7.00 16 9 C -0.06 -1.34 9.47 -39.61 -0.38 -1.72 16 10 C -0.18 -4.25 8.63 -39.27 -0.34 -4.59 16 11 C 0.13 3.23 5.58 -106.80 -0.60 2.63 16 12 C -0.44 -10.76 9.04 -37.75 -0.34 -11.10 16 13 H 0.09 2.00 7.91 -52.48 -0.42 1.58 16 14 C 0.07 1.69 5.14 -17.31 -0.09 1.60 16 15 N -0.77 -18.08 10.95 55.56 0.61 -17.47 16 16 Si 0.91 16.96 29.60 -169.99 -5.03 11.93 16 17 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 18 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 19 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 20 C -0.24 -5.69 9.73 -39.27 -0.38 -6.07 16 21 C -0.02 -0.46 9.52 -39.61 -0.38 -0.84 16 22 C -0.09 -1.10 4.92 -104.62 -0.51 -1.62 16 23 C -0.07 -0.73 9.67 -39.60 -0.38 -1.11 16 24 C -0.15 -1.42 10.03 -39.52 -0.40 -1.82 16 25 C 0.10 1.03 7.30 -39.42 -0.29 0.74 16 26 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 27 C -0.15 -1.50 10.03 -39.51 -0.40 -1.90 16 28 C -0.08 -0.83 9.04 -39.59 -0.36 -1.19 16 29 H 0.22 2.02 7.80 -54.09 -0.42 1.60 16 30 H 0.40 5.86 4.87 -40.82 -0.20 5.66 16 31 H 0.09 1.58 6.37 -52.49 -0.33 1.25 16 32 H 0.12 2.91 6.16 -52.48 -0.32 2.59 16 33 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 34 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 36 H 0.14 1.09 8.04 -52.48 -0.42 0.67 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 1.36 6.92 -52.48 -0.36 1.00 16 LS Contribution 352.03 15.07 5.30 5.30 Total: -1.00 -28.87 352.03 -8.59 -37.46 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -3.67 Total: 12.90 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -5.64 Total: -23.19 kcal Atomic # 7 Polarization: -30.12 SS G_CDS: 0.32 Total: -29.80 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.87 -8.59 -37.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491349002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.780 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds