Wall clock time and date at job start Tue Mar 31 2020 14:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46980 * 148.23109 * 3 2 1 5 5 N 1.46499 * 109.47284 * 28.23672 * 3 2 1 6 6 C 1.34771 * 120.00525 * 84.99475 * 5 3 2 7 7 O 1.21591 * 119.99774 * 0.02562 * 6 5 3 8 8 C 1.47641 * 120.00277 * 179.97438 * 6 5 3 9 9 C 1.40009 * 119.89199 * 359.72990 * 8 6 5 10 10 C 1.36321 * 120.10021 * 179.75671 * 9 8 6 11 11 C 1.40888 * 119.89573 * 0.51624 * 10 9 8 12 12 C 1.41109 * 120.10140 * 179.71422 * 11 10 9 13 13 H 1.08003 * 119.99424 * 204.64967 * 12 11 10 14 14 C 1.40227 * 120.00327 * 24.65448 * 12 11 10 15 15 N 1.30649 * 119.99675 * 17.86385 * 14 12 11 16 16 Si 1.86794 * 120.00050 * 197.85807 * 14 12 11 17 17 H 1.48503 * 109.46713 * 89.99818 * 16 14 12 18 18 H 1.48496 * 109.47423 * 209.99836 * 16 14 12 19 19 H 1.48502 * 109.47170 * 330.00607 * 16 14 12 20 20 C 1.40890 * 119.78979 * 359.73698 * 11 10 9 21 21 C 1.36315 * 119.89343 * 0.02562 * 20 11 10 22 22 C 1.50695 * 109.47151 * 268.23175 * 3 2 1 23 23 C 1.38244 * 119.97973 * 260.00124 * 22 3 2 24 24 C 1.38193 * 120.03204 * 179.97438 * 23 22 3 25 25 C 1.38457 * 119.97176 * 0.02562 * 24 23 22 26 26 F 1.35107 * 120.02833 * 179.97438 * 25 24 23 27 27 C 1.38466 * 119.95062 * 0.24762 * 25 24 23 28 28 C 1.38194 * 119.96888 * 359.47541 * 27 25 24 29 29 H 4.18744 * 15.03840 * 0.02562 * 4 2 1 30 30 H 0.97005 * 119.99898 * 264.99915 * 5 3 2 31 31 H 1.07997 * 119.94891 * 0.02562 * 9 8 6 32 32 H 1.08007 * 120.05079 * 180.23028 * 10 9 8 33 33 H 0.96998 * 119.99592 * 179.97438 * 15 14 12 34 34 H 1.07996 * 120.04928 * 179.97438 * 20 11 10 35 35 H 1.08002 * 119.94728 * 179.97438 * 21 20 11 36 36 H 1.08010 * 119.98002 * 359.97438 * 23 22 3 37 37 H 1.07997 * 120.01472 * 180.02562 * 24 23 22 38 38 H 1.07999 * 120.01053 * 179.74272 * 27 25 24 39 39 H 1.08005 * 119.98735 * 180.29663 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.8745 -0.5411 5 7 3.1349 -1.2160 -0.6535 6 6 3.2636 -1.2555 -1.9944 7 8 2.9743 -0.2813 -2.6619 8 6 3.7569 -2.4815 -2.6529 9 6 4.0957 -3.5997 -1.8816 10 6 4.5469 -4.7356 -2.4855 11 6 4.6823 -4.7793 -3.8872 12 6 5.1546 -5.9507 -4.5163 13 1 5.6310 -5.8895 -5.4837 14 6 5.0054 -7.1943 -3.8857 15 7 4.1453 -7.3339 -2.9122 16 14 6.0361 -8.6510 -4.4376 17 1 7.2999 -8.6866 -3.6585 18 1 5.2787 -9.9079 -4.2100 19 1 6.3494 -8.5165 -5.8830 20 6 4.3451 -3.6496 -4.6586 21 6 3.8902 -2.5199 -4.0461 22 6 3.1483 0.0447 1.4201 23 6 3.5741 1.2416 1.9654 24 6 4.0344 1.2833 3.2677 25 6 4.0696 0.1256 4.0264 26 9 4.5199 0.1651 5.2996 27 6 3.6483 -1.0737 3.4774 28 6 3.1830 -1.1118 2.1767 29 1 -1.0500 -0.0005 0.0009 30 1 3.3660 -1.9931 -0.1209 31 1 3.9953 -3.5639 -0.8069 32 1 4.8045 -5.5990 -1.8900 33 1 4.0418 -8.1942 -2.4763 34 1 4.4477 -3.6783 -5.7333 35 1 3.6318 -1.6533 -4.6366 36 1 3.5469 2.1445 1.3732 37 1 4.3665 2.2186 3.6936 38 1 3.6792 -1.9780 4.0669 39 1 2.8497 -2.0463 1.7498 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491349002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:22 Heat of formation + Delta-G solvation = 0.987333 kcal Electronic energy + Delta-G solvation = -24859.882378 eV Core-core repulsion = 21033.253462 eV Total energy + Delta-G solvation = -3826.628916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.93644 -41.24002 -40.08710 -38.89401 -36.56406 -35.67895 -33.70575 -32.26518 -32.19110 -31.45783 -31.26895 -28.21085 -26.85269 -24.34359 -23.62255 -22.91094 -22.67802 -21.36314 -19.53548 -19.34235 -19.00807 -18.41723 -17.69665 -17.17170 -16.83596 -16.62960 -16.36493 -16.07641 -15.74349 -15.64184 -15.10542 -14.97326 -14.75598 -14.55300 -14.44595 -14.06239 -13.87978 -13.67839 -13.32701 -13.25836 -13.11228 -12.86489 -12.62821 -12.38101 -12.05552 -11.79332 -11.66192 -11.38030 -11.25179 -11.12596 -10.74589 -10.39409 -10.14239 -9.71755 -9.58317 -9.42848 -8.79949 -6.48836 -0.02448 0.19737 0.41989 1.15197 1.39181 1.43282 1.53737 1.55287 1.81440 2.09756 2.17341 2.46183 2.59616 2.77410 3.20293 3.41426 3.64983 3.68380 3.71698 3.91956 4.10953 4.21998 4.26959 4.30977 4.44602 4.56584 4.84068 4.89241 4.92404 5.00331 5.02755 5.07667 5.14612 5.15034 5.27567 5.29702 5.49478 5.58526 5.80153 5.81574 5.93013 5.99116 6.22326 6.53367 6.58893 6.62006 6.76841 6.88329 7.35309 8.15165 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.002830 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.200325 B = 9893.079028 C =11156.271373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.234 4.234 3 C 0.302 3.698 4 H 0.107 0.893 5 N -0.718 5.718 6 C 0.577 3.423 7 O -0.597 6.597 8 C -0.294 4.294 9 C -0.053 4.053 10 C -0.197 4.197 11 C 0.103 3.897 12 C -0.472 4.472 13 H 0.085 0.915 14 C 0.039 3.961 15 N -0.796 5.796 16 Si 0.987 3.013 17 H -0.259 1.259 18 H -0.265 1.265 19 H -0.258 1.258 20 C -0.253 4.253 21 C -0.030 4.030 22 C -0.105 4.105 23 C -0.073 4.073 24 C -0.146 4.146 25 C 0.088 3.912 26 F -0.145 7.145 27 C -0.149 4.149 28 C -0.084 4.084 29 H 0.250 0.750 30 H 0.408 0.592 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.297 0.703 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 8.278 13.571 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.235 4.235 3 C 0.198 3.802 4 H 0.124 0.876 5 N -0.370 5.370 6 C 0.372 3.628 7 O -0.480 6.480 8 C -0.298 4.298 9 C -0.072 4.072 10 C -0.216 4.216 11 C 0.099 3.901 12 C -0.499 4.499 13 H 0.103 0.897 14 C -0.181 4.181 15 N -0.419 5.419 16 Si 0.807 3.193 17 H -0.183 1.183 18 H -0.190 1.190 19 H -0.182 1.182 20 C -0.273 4.273 21 C -0.050 4.050 22 C -0.105 4.105 23 C -0.092 4.092 24 C -0.165 4.165 25 C 0.069 3.931 26 F -0.123 7.123 27 C -0.168 4.168 28 C -0.102 4.102 29 H 0.267 0.733 30 H 0.247 0.753 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.173 0.827 37 H 0.179 0.821 38 H 0.172 0.828 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.794 8.783 13.336 16.069 hybrid contribution 0.171 -1.028 0.005 1.042 sum -1.622 7.755 13.341 15.517 Atomic orbital electron populations 1.25769 0.96741 0.97486 0.98785 1.23584 0.95063 1.02931 1.01954 1.16319 0.83619 0.89754 0.90483 0.87578 1.45889 1.68033 1.16573 1.06538 1.18423 0.75425 0.87243 0.81730 1.90626 1.54003 1.38349 1.65057 1.19106 1.21350 0.95262 0.94126 1.20707 0.96131 0.92098 0.98268 1.21010 1.08028 0.97894 0.94678 1.18137 0.86675 0.92514 0.92740 1.20134 1.32913 0.91748 1.05096 0.89657 1.26914 0.94338 1.03286 0.93536 1.69760 1.25598 1.28069 1.18515 0.85110 0.78569 0.75580 0.80028 1.18310 1.18956 1.18170 1.20861 1.12164 0.95689 0.98566 1.20503 0.94464 0.96408 0.93584 1.19708 1.01628 0.95307 0.93906 1.21081 0.95581 0.97768 0.94740 1.21350 1.02271 0.98469 0.94385 1.17971 0.99884 0.95581 0.79666 1.91497 1.86875 1.97314 1.36633 1.21298 1.01254 0.97940 0.96289 1.20944 0.97548 0.98479 0.93269 0.73342 0.75290 0.86022 0.86763 0.89149 0.87756 0.87832 0.82710 0.82128 0.82792 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 19.25 74.32 1.43 -2.73 16 2 C -0.23 -6.68 12.81 31.13 0.40 -6.28 16 3 C 0.30 8.40 2.62 42.44 0.11 8.51 16 4 H 0.11 3.12 7.44 -2.39 -0.02 3.10 16 5 N -0.72 -22.99 4.94 -457.93 -2.26 -25.25 16 6 C 0.58 23.89 7.71 86.73 0.67 24.56 16 7 O -0.60 -27.84 15.98 -4.00 -0.06 -27.91 16 8 C -0.29 -13.20 5.89 -19.93 -0.12 -13.32 16 9 C -0.05 -2.28 9.47 22.25 0.21 -2.07 16 10 C -0.20 -9.54 8.63 22.47 0.19 -9.35 16 11 C 0.10 5.25 5.58 -21.28 -0.12 5.13 16 12 C -0.47 -23.49 9.04 23.46 0.21 -23.28 16 13 H 0.09 4.08 7.91 -2.91 -0.02 4.06 16 14 C 0.04 1.76 5.14 85.35 0.44 2.20 16 15 N -0.80 -37.37 10.95 21.87 0.24 -37.13 16 16 Si 0.99 34.24 29.60 68.60 2.03 36.27 16 17 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 18 H -0.27 -8.71 7.11 99.48 0.71 -8.00 16 19 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 20 C -0.25 -12.42 9.73 22.47 0.22 -12.20 16 21 C -0.03 -1.44 9.52 22.25 0.21 -1.23 16 22 C -0.10 -2.30 4.92 -19.86 -0.10 -2.40 16 23 C -0.07 -1.32 9.67 22.26 0.22 -1.10 16 24 C -0.15 -2.42 10.03 22.31 0.22 -2.19 16 25 C 0.09 1.67 7.30 22.38 0.16 1.84 16 26 F -0.14 -2.92 17.27 44.97 0.78 -2.14 16 27 C -0.15 -2.75 10.03 22.31 0.22 -2.52 16 28 C -0.08 -1.70 9.04 22.26 0.20 -1.50 16 29 H 0.25 3.90 7.80 -4.42 -0.03 3.87 16 30 H 0.41 11.44 4.87 -92.70 -0.45 10.99 16 31 H 0.12 4.23 6.37 -2.91 -0.02 4.21 16 32 H 0.11 5.61 6.16 -2.91 -0.02 5.59 16 33 H 0.30 12.37 8.29 -92.71 -0.77 11.61 16 34 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 35 H 0.10 4.76 7.63 -2.91 -0.02 4.74 16 36 H 0.16 2.16 8.04 -2.91 -0.02 2.14 16 37 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 39 H 0.14 2.60 6.92 -2.91 -0.02 2.58 16 Total: -1.00 -62.66 352.03 6.16 -56.50 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: 0.65 Total: 37.61 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 4.79 Total: -37.95 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -2.02 Total: -62.38 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.06 Total: -27.91 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 34.24 SS G_CDS: 2.03 Total: 36.27 kcal Total: -62.66 6.16 -56.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491349002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.483 kcal (2) G-P(sol) polarization free energy of solvation -62.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds