Wall clock time and date at job start Tue Mar 31 2020 14:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47095 * 241.97288 * 3 2 1 5 5 N 1.46500 * 109.47352 * 1.97433 * 3 2 1 6 6 C 1.34776 * 119.99996 * 274.99972 * 5 3 2 7 7 O 1.21577 * 120.00225 * 0.02562 * 6 5 3 8 8 C 1.47645 * 119.99535 * 179.97438 * 6 5 3 9 9 C 1.40015 * 119.89294 * 180.02562 * 8 6 5 10 10 C 1.36310 * 120.11003 * 180.27632 * 9 8 6 11 11 C 1.40893 * 119.89094 * 359.50007 * 10 9 8 12 12 C 1.41102 * 120.10510 * 180.22834 * 11 10 9 13 13 H 1.07998 * 120.00085 * 204.79439 * 12 11 10 14 14 C 1.40229 * 120.00170 * 24.80056 * 12 11 10 15 15 N 1.30645 * 119.99784 * 17.73895 * 14 12 11 16 16 Si 1.86801 * 120.00102 * 197.74141 * 14 12 11 17 17 H 1.48500 * 109.46959 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47119 * 119.99901 * 16 14 12 19 19 H 1.48503 * 109.47053 * 239.99501 * 16 14 12 20 20 C 1.40888 * 119.79217 * 0.49526 * 11 10 9 21 21 C 1.36318 * 119.88896 * 359.75809 * 20 11 10 22 22 C 1.50700 * 109.46982 * 121.97246 * 3 2 1 23 23 C 1.38237 * 119.97714 * 279.72424 * 22 3 2 24 24 C 1.38209 * 120.02390 * 179.76840 * 23 22 3 25 25 C 1.38454 * 119.97376 * 0.50889 * 24 23 22 26 26 F 1.35096 * 120.02571 * 179.77270 * 25 24 23 27 27 C 1.38456 * 119.94990 * 359.74065 * 25 24 23 28 28 C 1.38200 * 119.97486 * 0.02562 * 27 25 24 29 29 H 4.18745 * 15.03807 * 359.97438 * 4 2 1 30 30 H 0.97005 * 119.99625 * 95.00084 * 5 3 2 31 31 H 1.08005 * 119.94624 * 359.97438 * 9 8 6 32 32 H 1.08000 * 120.05927 * 179.73728 * 10 9 8 33 33 H 0.97002 * 119.99718 * 180.02562 * 15 14 12 34 34 H 1.07997 * 120.05588 * 179.73431 * 20 11 10 35 35 H 1.08002 * 119.94881 * 179.97438 * 21 20 11 36 36 H 1.07996 * 119.98984 * 0.02562 * 23 22 3 37 37 H 1.08001 * 120.00938 * 180.25655 * 24 23 22 38 38 H 1.07999 * 120.01641 * 179.97438 * 27 25 24 39 39 H 1.07999 * 119.98793 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0091 0.4837 0.9071 5 7 3.1350 -1.3795 -0.0476 6 6 3.2640 -2.0883 1.0914 7 8 2.9742 -1.5826 2.1583 8 6 3.7563 -3.4795 1.0433 9 6 3.8891 -4.2141 2.2278 10 6 4.3485 -5.4968 2.1891 11 6 4.6800 -6.0869 0.9534 12 6 5.1514 -7.4161 0.9076 13 1 5.7667 -7.7427 0.0823 14 6 4.8209 -8.3130 1.9336 15 7 3.8219 -8.0509 2.7337 16 14 5.8090 -9.8826 2.1563 17 1 6.8790 -9.9439 1.1285 18 1 6.4205 -9.8947 3.5096 19 1 4.9125 -11.0571 2.0078 20 6 4.5447 -5.3438 -0.2359 21 6 4.0893 -4.0599 -0.1866 22 6 3.1479 0.7532 -1.2053 23 6 3.1877 0.1326 -2.4399 24 6 3.6434 0.8234 -3.5468 25 6 4.0700 2.1341 -3.4168 26 9 4.5199 2.8089 -4.4973 27 6 4.0345 2.7531 -2.1788 28 6 3.5739 2.0619 -1.0743 29 1 -1.0501 0.0002 -0.0007 30 1 3.3659 -1.7831 -0.8989 31 1 3.6316 -3.7620 3.1743 32 1 4.4546 -6.0613 3.1037 33 1 3.5936 -8.6711 3.4437 34 1 4.8017 -5.7905 -1.1850 35 1 3.9856 -3.4892 -1.0976 36 1 2.8587 -0.8912 -2.5402 37 1 3.6705 0.3396 -4.5120 38 1 4.3674 3.7753 -2.0762 39 1 3.5458 2.5446 -0.1086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491349006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:26 Heat of formation + Delta-G solvation = 14.760481 kcal Electronic energy + Delta-G solvation = -24770.658368 eV Core-core repulsion = 20944.626700 eV Total energy + Delta-G solvation = -3826.031668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.14003 -40.03693 -38.81099 -37.19920 -35.29649 -33.93665 -32.40186 -31.45271 -30.98170 -30.06307 -29.46185 -26.79882 -25.40636 -23.46745 -22.20112 -21.84789 -20.91022 -19.80396 -18.40509 -18.06219 -17.56375 -17.20128 -16.64140 -15.86345 -15.79916 -15.32955 -15.28901 -14.86930 -14.42481 -14.03204 -13.87918 -13.76024 -13.57221 -13.25654 -13.09405 -12.74154 -12.45369 -12.32992 -12.20459 -11.91460 -11.42363 -11.31708 -11.27322 -10.99849 -10.68498 -10.56509 -10.21442 -10.07502 -9.58302 -9.40479 -9.37139 -9.12557 -8.95436 -8.86538 -7.73885 -7.61431 -7.05569 -4.63842 0.78999 0.93850 2.17288 2.68725 2.85881 2.88020 2.93938 2.99288 3.00115 3.27647 3.71873 3.79961 3.81840 3.97453 4.39802 4.42798 4.50826 4.58237 4.71441 4.96071 5.04353 5.36849 5.53854 5.60486 5.65531 5.81836 5.89326 5.90380 5.94361 6.00802 6.18686 6.25512 6.56491 6.72873 6.77056 6.82891 7.01782 7.05950 7.40007 7.57105 7.65930 7.71257 7.83725 8.01029 8.13000 8.39643 8.59537 8.71759 8.95670 9.86248 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.002525 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.471546 B =11086.333431 C =11994.761371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.190 4.190 3 C 0.301 3.699 4 H 0.116 0.884 5 N -0.734 5.734 6 C 0.575 3.425 7 O -0.566 6.566 8 C -0.284 4.284 9 C -0.034 4.034 10 C -0.183 4.183 11 C 0.129 3.871 12 C -0.441 4.441 13 H 0.085 0.915 14 C 0.073 3.927 15 N -0.767 5.767 16 Si 0.913 3.087 17 H -0.257 1.257 18 H -0.268 1.268 19 H -0.271 1.271 20 C -0.234 4.234 21 C -0.048 4.048 22 C -0.094 4.094 23 C -0.077 4.077 24 C -0.149 4.149 25 C 0.098 3.902 26 F -0.140 7.140 27 C -0.151 4.151 28 C -0.073 4.073 29 H 0.217 0.783 30 H 0.399 0.601 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.287 0.713 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 13.519 -8.662 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.191 4.191 3 C 0.195 3.805 4 H 0.133 0.867 5 N -0.388 5.388 6 C 0.370 3.630 7 O -0.447 6.447 8 C -0.289 4.289 9 C -0.053 4.053 10 C -0.202 4.202 11 C 0.125 3.875 12 C -0.468 4.468 13 H 0.103 0.897 14 C -0.149 4.149 15 N -0.390 5.390 16 Si 0.737 3.263 17 H -0.181 1.181 18 H -0.193 1.193 19 H -0.197 1.197 20 C -0.254 4.254 21 C -0.067 4.067 22 C -0.095 4.095 23 C -0.095 4.095 24 C -0.168 4.168 25 C 0.079 3.921 26 F -0.119 7.119 27 C -0.170 4.170 28 C -0.091 4.091 29 H 0.234 0.766 30 H 0.236 0.764 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.542 13.782 -7.739 15.881 hybrid contribution 0.194 -0.839 -0.546 1.019 sum -1.349 12.943 -8.285 15.426 Atomic orbital electron populations 1.24874 0.95792 0.99026 1.00817 1.23268 0.94341 1.01217 1.00276 1.16274 0.83388 0.84124 0.96665 0.86650 1.46078 1.69527 1.12439 1.10756 1.18665 0.75602 0.86317 0.82369 1.90650 1.52430 1.71982 1.29602 1.18828 1.21686 0.93350 0.95008 1.20471 0.95233 0.93860 0.95772 1.21019 1.06880 0.93899 0.98418 1.17792 0.86303 0.92420 0.90947 1.19883 1.26416 0.94679 1.05848 0.89655 1.26124 0.93812 1.00743 0.94183 1.69755 1.20185 1.35893 1.13193 0.86168 0.80501 0.80020 0.79649 1.18051 1.19318 1.19652 1.20663 1.11864 0.95604 0.97246 1.20339 0.96877 0.94979 0.94526 1.19828 1.00328 0.94893 0.94456 1.20863 0.97301 1.00189 0.91166 1.21133 1.01895 0.93246 1.00487 1.17751 0.99631 0.91112 0.83581 1.91502 1.86793 1.80010 1.53601 1.21117 1.03227 1.01351 0.91294 1.20889 0.96196 0.93203 0.98862 0.76594 0.76425 0.88129 0.86120 0.90150 0.88438 0.89420 0.84789 0.84355 0.84417 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 19.25 29.55 0.57 -1.88 16 2 C -0.19 -2.79 12.81 -37.12 -0.48 -3.26 16 3 C 0.30 4.23 2.62 -71.87 -0.19 4.05 16 4 H 0.12 1.70 7.44 -51.93 -0.39 1.31 16 5 N -0.73 -11.83 4.94 -58.71 -0.29 -12.12 16 6 C 0.57 11.94 7.71 -12.42 -0.10 11.84 16 7 O -0.57 -13.28 15.98 5.30 0.08 -13.19 16 8 C -0.28 -6.36 5.89 -104.73 -0.62 -6.98 16 9 C -0.03 -0.82 9.52 -39.61 -0.38 -1.20 16 10 C -0.18 -4.61 8.63 -39.27 -0.34 -4.95 16 11 C 0.13 3.22 5.57 -106.80 -0.60 2.62 16 12 C -0.44 -10.78 9.04 -37.75 -0.34 -11.12 16 13 H 0.09 1.98 7.91 -52.49 -0.42 1.56 16 14 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 15 N -0.77 -18.53 10.96 55.56 0.61 -17.92 16 16 Si 0.91 17.13 29.60 -169.99 -5.03 12.10 16 17 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 20 C -0.23 -5.29 9.73 -39.27 -0.38 -5.68 16 21 C -0.05 -1.00 9.47 -39.61 -0.38 -1.37 16 22 C -0.09 -1.07 4.92 -104.62 -0.51 -1.59 16 23 C -0.08 -0.80 9.04 -39.59 -0.36 -1.16 16 24 C -0.15 -1.44 10.03 -39.51 -0.40 -1.83 16 25 C 0.10 1.00 7.30 -39.42 -0.29 0.71 16 26 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 27 C -0.15 -1.39 10.03 -39.52 -0.40 -1.78 16 28 C -0.07 -0.71 9.67 -39.59 -0.38 -1.09 16 29 H 0.22 2.00 7.80 -54.09 -0.42 1.58 16 30 H 0.40 5.60 4.85 -40.82 -0.20 5.40 16 31 H 0.10 2.40 7.63 -52.48 -0.40 2.00 16 32 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 33 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 34 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.09 1.47 6.37 -52.49 -0.33 1.13 16 36 H 0.13 1.27 6.90 -52.49 -0.36 0.91 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.14 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 352.01 15.07 5.30 5.30 Total: -1.00 -29.28 352.01 -8.59 -37.87 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -3.67 Total: 12.46 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -5.64 Total: -23.05 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.32 Total: -30.04 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.28 -8.59 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491349006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.634 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds