Wall clock time and date at job start Tue Mar 31 2020 14:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47095 * 241.97288 * 3 2 1 5 5 N 1.46500 * 109.47352 * 1.97433 * 3 2 1 6 6 C 1.34776 * 119.99996 * 274.99972 * 5 3 2 7 7 O 1.21577 * 120.00225 * 0.02562 * 6 5 3 8 8 C 1.47645 * 119.99535 * 179.97438 * 6 5 3 9 9 C 1.40015 * 119.89294 * 180.02562 * 8 6 5 10 10 C 1.36310 * 120.11003 * 180.27632 * 9 8 6 11 11 C 1.40893 * 119.89094 * 359.50007 * 10 9 8 12 12 C 1.41102 * 120.10510 * 180.22834 * 11 10 9 13 13 H 1.07998 * 120.00085 * 204.79439 * 12 11 10 14 14 C 1.40229 * 120.00170 * 24.80056 * 12 11 10 15 15 N 1.30645 * 119.99784 * 17.73895 * 14 12 11 16 16 Si 1.86801 * 120.00102 * 197.74141 * 14 12 11 17 17 H 1.48500 * 109.46959 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47119 * 119.99901 * 16 14 12 19 19 H 1.48503 * 109.47053 * 239.99501 * 16 14 12 20 20 C 1.40888 * 119.79217 * 0.49526 * 11 10 9 21 21 C 1.36318 * 119.88896 * 359.75809 * 20 11 10 22 22 C 1.50700 * 109.46982 * 121.97246 * 3 2 1 23 23 C 1.38237 * 119.97714 * 279.72424 * 22 3 2 24 24 C 1.38209 * 120.02390 * 179.76840 * 23 22 3 25 25 C 1.38454 * 119.97376 * 0.50889 * 24 23 22 26 26 F 1.35096 * 120.02571 * 179.77270 * 25 24 23 27 27 C 1.38456 * 119.94990 * 359.74065 * 25 24 23 28 28 C 1.38200 * 119.97486 * 0.02562 * 27 25 24 29 29 H 4.18745 * 15.03807 * 359.97438 * 4 2 1 30 30 H 0.97005 * 119.99625 * 95.00084 * 5 3 2 31 31 H 1.08005 * 119.94624 * 359.97438 * 9 8 6 32 32 H 1.08000 * 120.05927 * 179.73728 * 10 9 8 33 33 H 0.97002 * 119.99718 * 180.02562 * 15 14 12 34 34 H 1.07997 * 120.05588 * 179.73431 * 20 11 10 35 35 H 1.08002 * 119.94881 * 179.97438 * 21 20 11 36 36 H 1.07996 * 119.98984 * 0.02562 * 23 22 3 37 37 H 1.08001 * 120.00938 * 180.25655 * 24 23 22 38 38 H 1.07999 * 120.01641 * 179.97438 * 27 25 24 39 39 H 1.07999 * 119.98793 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0091 0.4837 0.9071 5 7 3.1350 -1.3795 -0.0476 6 6 3.2640 -2.0883 1.0914 7 8 2.9742 -1.5826 2.1583 8 6 3.7563 -3.4795 1.0433 9 6 3.8891 -4.2141 2.2278 10 6 4.3485 -5.4968 2.1891 11 6 4.6800 -6.0869 0.9534 12 6 5.1514 -7.4161 0.9076 13 1 5.7667 -7.7427 0.0823 14 6 4.8209 -8.3130 1.9336 15 7 3.8219 -8.0509 2.7337 16 14 5.8090 -9.8826 2.1563 17 1 6.8790 -9.9439 1.1285 18 1 6.4205 -9.8947 3.5096 19 1 4.9125 -11.0571 2.0078 20 6 4.5447 -5.3438 -0.2359 21 6 4.0893 -4.0599 -0.1866 22 6 3.1479 0.7532 -1.2053 23 6 3.1877 0.1326 -2.4399 24 6 3.6434 0.8234 -3.5468 25 6 4.0700 2.1341 -3.4168 26 9 4.5199 2.8089 -4.4973 27 6 4.0345 2.7531 -2.1788 28 6 3.5739 2.0619 -1.0743 29 1 -1.0501 0.0002 -0.0007 30 1 3.3659 -1.7831 -0.8989 31 1 3.6316 -3.7620 3.1743 32 1 4.4546 -6.0613 3.1037 33 1 3.5936 -8.6711 3.4437 34 1 4.8017 -5.7905 -1.1850 35 1 3.9856 -3.4892 -1.0976 36 1 2.8587 -0.8912 -2.5402 37 1 3.6705 0.3396 -4.5120 38 1 4.3674 3.7753 -2.0762 39 1 3.5458 2.5446 -0.1086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491349006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:25 Heat of formation + Delta-G solvation = 0.756300 kcal Electronic energy + Delta-G solvation = -24771.265634 eV Core-core repulsion = 20944.626700 eV Total energy + Delta-G solvation = -3826.638934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.92729 -41.23996 -40.08044 -38.89137 -36.55952 -35.70364 -33.66604 -32.22464 -32.14281 -31.71911 -31.11328 -28.20055 -26.84294 -24.33814 -23.66270 -22.92744 -22.60270 -21.37643 -19.57931 -19.28660 -19.01899 -18.44308 -17.65640 -17.19802 -16.76771 -16.61555 -16.40026 -16.07692 -15.73675 -15.64121 -15.10682 -14.97310 -14.75456 -14.54003 -14.41266 -14.05234 -13.97143 -13.64265 -13.32323 -13.22272 -13.14409 -12.83174 -12.64692 -12.36336 -12.04424 -11.79078 -11.66002 -11.37133 -11.24861 -11.13115 -10.75643 -10.39614 -10.12956 -9.70720 -9.57107 -9.43563 -8.79705 -6.48666 -0.01310 0.20920 0.42193 1.15695 1.37747 1.41778 1.55206 1.55653 1.81698 2.09225 2.16696 2.46988 2.59295 2.78215 3.21534 3.41855 3.65932 3.69694 3.72121 3.93193 4.11995 4.23099 4.27031 4.33456 4.41241 4.57515 4.85302 4.90255 4.97525 5.00579 5.01931 5.08843 5.15658 5.20183 5.24405 5.29428 5.50173 5.58744 5.78060 5.81837 5.94504 6.01541 6.20003 6.55898 6.60447 6.62847 6.76573 6.89127 7.36264 8.15464 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.002525 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.471546 B =11086.333431 C =11994.761371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.234 4.234 3 C 0.302 3.698 4 H 0.104 0.896 5 N -0.716 5.716 6 C 0.577 3.423 7 O -0.599 6.599 8 C -0.294 4.294 9 C -0.048 4.048 10 C -0.204 4.204 11 C 0.102 3.898 12 C -0.469 4.469 13 H 0.093 0.907 14 C 0.033 3.967 15 N -0.802 5.802 16 Si 0.988 3.012 17 H -0.251 1.251 18 H -0.265 1.265 19 H -0.264 1.264 20 C -0.245 4.245 21 C -0.037 4.037 22 C -0.105 4.105 23 C -0.083 4.083 24 C -0.148 4.148 25 C 0.088 3.912 26 F -0.145 7.145 27 C -0.147 4.147 28 C -0.075 4.075 29 H 0.250 0.750 30 H 0.410 0.590 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.295 0.705 34 H 0.117 0.883 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 14.035 -10.625 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.235 4.235 3 C 0.198 3.802 4 H 0.122 0.878 5 N -0.369 5.369 6 C 0.371 3.629 7 O -0.482 6.482 8 C -0.298 4.298 9 C -0.067 4.067 10 C -0.223 4.223 11 C 0.098 3.902 12 C -0.496 4.496 13 H 0.111 0.889 14 C -0.186 4.186 15 N -0.426 5.426 16 Si 0.808 3.192 17 H -0.174 1.174 18 H -0.190 1.190 19 H -0.188 1.188 20 C -0.264 4.264 21 C -0.055 4.055 22 C -0.105 4.105 23 C -0.101 4.101 24 C -0.166 4.166 25 C 0.069 3.931 26 F -0.123 7.123 27 C -0.166 4.166 28 C -0.093 4.093 29 H 0.266 0.734 30 H 0.249 0.751 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.151 0.849 36 H 0.160 0.840 37 H 0.174 0.826 38 H 0.177 0.823 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.484 14.329 -9.750 17.394 hybrid contribution 0.082 -0.852 0.026 0.857 sum -1.402 13.476 -9.723 16.677 Atomic orbital electron populations 1.25767 0.96748 0.97075 0.99243 1.23582 0.95064 1.03000 1.01844 1.16308 0.83598 0.82658 0.97635 0.87831 1.45848 1.68071 1.13194 1.09755 1.18442 0.75428 0.85957 0.83074 1.90629 1.53930 1.72537 1.31138 1.19102 1.21327 0.94354 0.95039 1.20538 0.95758 0.93924 0.96503 1.20944 1.08687 0.94349 0.98325 1.18151 0.86983 0.93406 0.91621 1.20188 1.27307 0.95021 1.07108 0.88928 1.27026 0.94298 1.03938 0.93296 1.69805 1.21491 1.37448 1.13846 0.85055 0.78890 0.75674 0.79581 1.17408 1.19006 1.18825 1.20939 1.11931 0.96307 0.97223 1.20680 0.94777 0.94569 0.95509 1.19694 1.01627 0.95493 0.93715 1.20956 0.97499 1.00670 0.90975 1.21311 1.01164 0.93125 1.01042 1.17970 0.99865 0.91473 0.83808 1.91494 1.86885 1.80112 1.53844 1.21342 1.02340 1.02263 0.90637 1.21071 0.95664 0.92710 0.99856 0.73381 0.75111 0.89026 0.87820 0.89356 0.86494 0.84941 0.84032 0.82578 0.82280 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 19.25 74.32 1.43 -2.70 16 2 C -0.23 -6.58 12.81 31.13 0.40 -6.19 16 3 C 0.30 8.25 2.62 42.44 0.11 8.36 16 4 H 0.10 3.05 7.44 -2.39 -0.02 3.03 16 5 N -0.72 -22.21 4.94 -457.93 -2.26 -24.47 16 6 C 0.58 23.88 7.71 86.73 0.67 24.54 16 7 O -0.60 -28.58 15.98 -3.96 -0.06 -28.64 16 8 C -0.29 -13.18 5.89 -19.93 -0.12 -13.30 16 9 C -0.05 -2.40 9.52 22.25 0.21 -2.19 16 10 C -0.20 -10.71 8.63 22.47 0.19 -10.52 16 11 C 0.10 5.18 5.57 -21.28 -0.12 5.07 16 12 C -0.47 -23.23 9.04 23.46 0.21 -23.02 16 13 H 0.09 4.29 7.91 -2.91 -0.02 4.26 16 14 C 0.03 1.55 5.14 85.35 0.44 1.99 16 15 N -0.80 -39.79 10.96 21.87 0.24 -39.55 16 16 Si 0.99 34.95 29.60 68.60 2.03 36.98 16 17 H -0.25 -8.54 7.11 99.48 0.71 -7.83 16 18 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 19 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 20 C -0.24 -10.89 9.73 22.47 0.22 -10.67 16 21 C -0.04 -1.47 9.47 22.25 0.21 -1.26 16 22 C -0.10 -2.21 4.92 -19.86 -0.10 -2.30 16 23 C -0.08 -1.55 9.04 22.26 0.20 -1.34 16 24 C -0.15 -2.51 10.03 22.31 0.22 -2.28 16 25 C 0.09 1.59 7.30 22.37 0.16 1.75 16 26 F -0.14 -2.80 17.27 44.97 0.78 -2.02 16 27 C -0.15 -2.36 10.03 22.31 0.22 -2.14 16 28 C -0.07 -1.31 9.67 22.26 0.22 -1.10 16 29 H 0.25 3.85 7.80 -4.41 -0.03 3.82 16 30 H 0.41 10.61 4.85 -92.70 -0.45 10.16 16 31 H 0.09 4.63 7.63 -2.91 -0.02 4.60 16 32 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 33 H 0.30 13.09 8.29 -92.71 -0.77 12.32 16 34 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 35 H 0.13 4.01 6.37 -2.91 -0.02 3.99 16 36 H 0.14 2.34 6.90 -2.91 -0.02 2.32 16 37 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.15 2.13 8.04 -2.91 -0.02 2.11 16 Total: -1.00 -65.03 352.01 6.16 -58.86 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.65 Total: 36.14 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 4.79 Total: -37.30 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -2.02 Total: -64.02 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.06 Total: -28.64 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Total: -65.03 6.16 -58.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491349006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.621 kcal (2) G-P(sol) polarization free energy of solvation -65.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds