Wall clock time and date at job start Tue Mar 31 2020 14:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47375 * 10.92382 * 3 2 1 5 5 C 1.37088 * 119.99907 * 263.73302 * 4 3 2 6 6 H 1.08004 * 119.99735 * 142.46313 * 5 4 3 7 7 C 1.38952 * 120.00321 * 322.46242 * 5 4 3 8 8 N 1.31408 * 120.00083 * 157.51356 * 7 5 4 9 9 Si 1.86795 * 119.99905 * 337.51512 * 7 5 4 10 10 H 1.48505 * 109.47163 * 95.70566 * 9 7 5 11 11 H 1.48498 * 109.47097 * 215.70055 * 9 7 5 12 12 H 1.48498 * 109.47490 * 335.70293 * 9 7 5 13 13 C 1.34775 * 119.99605 * 83.73383 * 4 3 2 14 14 O 1.21298 * 119.99606 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00654 * 0.02562 * 13 4 3 16 16 C 1.53000 * 109.47522 * 180.02562 * 15 13 4 17 17 C 1.50696 * 109.46962 * 179.97438 * 16 15 13 18 18 C 1.38286 * 119.97211 * 270.01740 * 17 16 15 19 19 C 1.38249 * 120.11433 * 180.02562 * 18 17 16 20 20 C 1.38170 * 120.05118 * 359.68274 * 19 18 17 21 21 C 1.38714 * 119.94577 * 0.56854 * 20 19 18 22 22 O 1.35892 * 120.05788 * 179.72388 * 21 20 19 23 23 C 1.42903 * 116.99819 * 359.72663 * 22 21 20 24 24 F 1.39902 * 109.47034 * 60.00566 * 23 22 21 25 25 F 1.39892 * 109.47459 * 300.00158 * 23 22 21 26 26 C 1.38128 * 119.97268 * 89.99951 * 17 16 15 27 27 H 4.40633 * 5.51425 * 180.02562 * 4 1 2 28 28 H 1.09007 * 109.46940 * 250.91897 * 3 2 1 29 29 H 1.09004 * 109.46956 * 130.92611 * 3 2 1 30 30 H 0.96996 * 120.00559 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47460 * 59.99202 * 15 13 4 32 32 H 1.09004 * 109.46690 * 299.99901 * 15 13 4 33 33 H 1.09001 * 109.47048 * 59.99766 * 16 15 13 34 34 H 1.08998 * 109.46820 * 299.99244 * 16 15 13 35 35 H 1.08000 * 119.94474 * 0.02562 * 18 17 16 36 36 H 1.07997 * 119.97235 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.02711 * 180.29463 * 20 19 18 38 38 H 1.09004 * 109.46756 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.02623 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3553 -0.2617 5 6 3.4860 -2.1708 0.7827 6 1 3.2665 -3.2275 0.7402 7 6 4.1242 -1.6381 1.8961 8 7 4.0717 -2.2686 3.0479 9 14 5.0569 -0.0258 1.7557 10 1 4.1787 1.0929 2.1832 11 1 6.2589 -0.0718 2.6263 12 1 5.4743 0.1835 0.3461 13 6 3.2397 -1.8008 -1.5294 14 8 3.6450 -2.9233 -1.7461 15 6 2.8543 -0.9041 -2.6776 16 6 3.0657 -1.6471 -3.9983 17 6 2.6798 -0.7505 -5.1464 18 6 1.3801 -0.7539 -5.6189 19 6 1.0230 0.0671 -6.6723 20 6 1.9628 0.8980 -7.2515 21 6 3.2684 0.8994 -6.7828 22 8 4.1958 1.7117 -7.3544 23 6 3.7583 2.5339 -8.4382 24 9 2.7368 3.3820 -7.9973 25 9 3.2784 1.7246 -9.4734 26 6 3.6243 0.0742 -5.7256 27 1 -1.0497 -0.0004 -0.0003 28 1 3.0091 0.3368 0.9713 29 1 3.0090 0.6741 -0.7765 30 1 4.5168 -1.8966 3.8253 31 1 3.4734 -0.0071 -2.6618 32 1 1.8054 -0.6232 -2.5831 33 1 2.4463 -2.5438 -4.0139 34 1 4.1146 -1.9282 -4.0931 35 1 0.6429 -1.3989 -5.1642 36 1 0.0075 0.0623 -7.0398 37 1 1.6822 1.5427 -8.0713 38 1 4.5948 3.1307 -8.8020 39 1 4.6392 0.0764 -5.3563 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491506767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:05 Heat of formation + Delta-G solvation = -88.999877 kcal Electronic energy + Delta-G solvation = -26358.827068 eV Core-core repulsion = 22097.526789 eV Total energy + Delta-G solvation = -4261.300279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.69886 -47.68874 -40.23315 -38.99912 -37.82482 -35.44591 -33.63727 -32.63896 -31.60569 -30.70762 -29.53234 -26.78013 -26.45198 -25.68616 -23.59359 -22.71657 -21.33878 -18.98902 -18.82272 -18.44674 -18.35289 -18.25564 -16.78083 -16.45162 -16.30434 -15.84493 -15.58860 -15.33880 -14.91618 -14.68125 -14.28874 -14.10047 -14.02040 -13.88279 -13.57600 -13.25667 -13.14736 -13.02961 -12.82496 -12.63602 -12.40599 -12.07981 -11.92956 -11.56736 -11.42873 -10.98046 -10.96626 -10.84096 -10.64030 -10.26121 -9.79169 -9.57519 -9.16587 -8.98534 -8.61548 -8.45685 -7.90424 -6.43364 -4.01132 1.16379 1.23058 2.25744 2.97454 3.11465 3.14519 3.16542 3.20802 3.33268 3.56042 3.68826 3.93712 4.10475 4.27958 4.44358 4.62331 4.70682 4.80762 4.97838 5.03209 5.13516 5.20881 5.34157 5.44352 5.52171 5.60117 5.73881 5.87753 5.93681 6.00477 6.07190 6.15754 6.26932 6.37647 6.38837 6.45671 6.63703 6.94214 7.48488 8.07269 8.24404 8.43862 8.91068 9.25729 9.69452 10.68757 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.002862 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.181533 B = 9780.438846 C =10005.305369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.175 4.175 3 C 0.192 3.808 4 N -0.464 5.464 5 C -0.318 4.318 6 H 0.106 0.894 7 C 0.061 3.939 8 N -0.860 5.860 9 Si 0.865 3.135 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.260 1.260 13 C 0.472 3.528 14 O -0.558 6.558 15 C -0.133 4.133 16 C -0.064 4.064 17 C -0.038 4.038 18 C -0.138 4.138 19 C -0.082 4.082 20 C -0.199 4.199 21 C 0.102 3.898 22 O -0.321 6.321 23 C 0.412 3.588 24 F -0.199 7.199 25 F -0.200 7.200 26 C -0.131 4.131 27 H 0.213 0.787 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.275 0.725 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.180 0.820 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 12.538 -20.956 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.177 4.177 3 C 0.069 3.931 4 N -0.185 5.185 5 C -0.445 4.445 6 H 0.124 0.876 7 C -0.145 4.145 8 N -0.495 5.495 9 Si 0.692 3.308 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.261 3.739 14 O -0.439 6.439 15 C -0.174 4.174 16 C -0.102 4.102 17 C -0.038 4.038 18 C -0.156 4.156 19 C -0.100 4.100 20 C -0.218 4.218 21 C 0.059 3.941 22 O -0.239 6.239 23 C 0.321 3.679 24 F -0.181 7.181 25 F -0.182 7.182 26 C -0.150 4.150 27 H 0.230 0.770 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.197 0.803 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.009 11.942 -20.807 24.178 hybrid contribution -0.082 1.104 0.038 1.107 sum -3.091 13.046 -20.769 24.720 Atomic orbital electron populations 1.24722 0.95662 1.00883 1.02364 1.23772 0.94889 0.99797 0.99204 1.18921 0.84003 0.87582 1.02616 1.43696 1.57073 1.12173 1.05592 1.19036 1.37737 0.93899 0.93803 0.87629 1.25354 0.96265 0.98108 0.94769 1.69759 1.40121 1.40310 0.99341 0.87119 0.80683 0.83501 0.79500 1.20000 1.20868 1.18363 1.20261 0.81539 0.88669 0.83428 1.90567 1.48757 1.20619 1.83937 1.21654 1.02963 0.99289 0.93468 1.20368 1.03635 0.96584 0.89597 1.19898 0.92820 0.95261 0.95853 1.21135 0.96164 1.00667 0.97666 1.20924 0.98982 0.94687 0.95376 1.21448 0.92617 1.04020 1.03707 1.18828 0.87900 0.92554 0.94774 1.86616 1.37659 1.52750 1.46830 1.23340 0.86952 0.80669 0.76902 1.93099 1.64164 1.71298 1.89562 1.93094 1.90227 1.75132 1.59735 1.20377 1.01113 0.97433 0.96059 0.76996 0.88577 0.89588 0.91499 0.89920 0.89811 0.89788 0.89843 0.85368 0.85522 0.85298 0.80346 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.61 19.25 29.55 0.57 -3.04 16 2 C -0.18 -3.37 12.91 -37.12 -0.48 -3.84 16 3 C 0.19 3.91 4.27 -6.83 -0.03 3.88 16 4 N -0.46 -11.20 2.15 -117.93 -0.25 -11.45 16 5 C -0.32 -8.99 9.36 -14.94 -0.14 -9.13 16 6 H 0.11 3.37 7.91 -52.48 -0.42 2.95 16 7 C 0.06 1.68 5.26 -17.47 -0.09 1.59 16 8 N -0.86 -24.77 13.96 55.50 0.77 -23.99 16 9 Si 0.87 19.87 25.05 -169.99 -4.26 15.61 16 10 H -0.27 -5.83 6.69 56.52 0.38 -5.45 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 13 C 0.47 10.75 7.56 -10.99 -0.08 10.67 16 14 O -0.56 -14.66 15.85 5.54 0.09 -14.57 16 15 C -0.13 -2.24 4.29 -27.88 -0.12 -2.36 16 16 C -0.06 -0.97 4.63 -27.88 -0.13 -1.09 16 17 C -0.04 -0.50 5.13 -104.65 -0.54 -1.04 16 18 C -0.14 -1.64 9.70 -39.56 -0.38 -2.03 16 19 C -0.08 -0.89 10.04 -39.60 -0.40 -1.29 16 20 C -0.20 -2.29 8.26 -39.43 -0.33 -2.62 16 21 C 0.10 1.25 6.48 -39.21 -0.25 0.99 16 22 O -0.32 -3.36 10.43 -19.40 -0.20 -3.56 16 23 C 0.41 2.98 5.98 101.05 0.60 3.59 16 24 F -0.20 -1.77 15.57 2.25 0.04 -1.74 16 25 F -0.20 -1.75 15.60 2.25 0.04 -1.71 16 26 C -0.13 -1.68 9.64 -39.43 -0.38 -2.06 16 27 H 0.21 2.58 7.80 -54.10 -0.42 2.16 16 28 H 0.10 2.06 3.62 -51.93 -0.19 1.87 16 29 H 0.09 1.45 6.70 -51.93 -0.35 1.10 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.08 1.25 7.42 -51.93 -0.39 0.87 16 32 H 0.08 1.32 7.48 -51.93 -0.39 0.93 16 33 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 34 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.36 5.10 -52.49 -0.27 1.09 16 38 H 0.18 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -33.64 345.00 -4.86 -38.49 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.10 Total: 5.52 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -2.18 Total: -7.79 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.52 Total: -35.44 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.11 Total: -18.13 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.07 Total: -3.45 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.26 Total: 15.61 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.64 -4.86 -38.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491506767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.505 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds