Wall clock time and date at job start Tue Mar 31 2020 14:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47399 * 57.71250 * 3 2 1 5 5 C 1.36851 * 120.00076 * 82.66073 * 4 3 2 6 6 H 1.08002 * 119.99797 * 167.79205 * 5 4 3 7 7 C 1.39051 * 120.00032 * 347.78509 * 5 4 3 8 8 N 1.31356 * 120.00260 * 0.16865 * 7 5 4 9 9 Si 1.86802 * 119.99738 * 180.16811 * 7 5 4 10 10 H 1.48499 * 109.47263 * 90.00311 * 9 7 5 11 11 H 1.48496 * 109.47057 * 209.99893 * 9 7 5 12 12 H 1.48496 * 109.47367 * 329.99918 * 9 7 5 13 13 C 1.34775 * 119.99798 * 262.65529 * 4 3 2 14 14 O 1.21636 * 120.00403 * 185.34826 * 13 4 3 15 15 C 1.47339 * 120.00084 * 5.07595 * 13 4 3 16 16 C 1.40154 * 120.50431 * 52.12416 * 15 13 4 17 17 C 1.38073 * 118.43732 * 180.02562 * 16 15 13 18 18 C 1.39467 * 119.37123 * 0.02562 * 17 16 15 19 19 C 1.48290 * 119.50885 * 179.97438 * 18 17 16 20 20 C 1.39347 * 119.72249 * 179.97438 * 19 18 17 21 21 C 1.38457 * 119.06259 * 179.97438 * 20 19 18 22 22 C 1.38737 * 118.50312 * 359.97438 * 21 20 19 23 23 C 1.38361 * 119.36479 * 0.02562 * 22 21 20 24 24 N 1.31678 * 120.89971 * 359.74300 * 23 22 21 25 25 N 1.32727 * 120.97894 * 359.97438 * 18 17 16 26 26 C 1.32024 * 121.70343 * 359.70455 * 25 18 17 27 27 O 1.35431 * 119.74468 * 180.28765 * 26 25 18 28 28 H 4.40636 * 5.51534 * 180.02562 * 4 1 2 29 29 H 1.09005 * 109.47253 * 297.70434 * 3 2 1 30 30 H 1.09001 * 109.46751 * 177.71244 * 3 2 1 31 31 H 0.96996 * 120.00316 * 180.02562 * 8 7 5 32 32 H 1.08004 * 120.77959 * 0.02985 * 16 15 13 33 33 H 1.08001 * 120.31522 * 180.02562 * 17 16 15 34 34 H 1.07998 * 120.47236 * 359.97438 * 20 19 18 35 35 H 1.08000 * 120.75051 * 180.02562 * 21 20 19 36 36 H 1.08007 * 120.32181 * 180.02562 * 22 21 20 37 37 H 1.08004 * 119.55084 * 179.97438 * 23 22 21 38 38 H 0.96706 * 114.00094 * 270.29452 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7369 -1.1676 5 6 3.2198 -0.1147 -2.3835 6 1 3.7576 -0.5843 -3.1939 7 6 2.6137 1.1219 -2.5757 8 7 1.9623 1.6945 -1.5892 9 14 2.7259 1.9689 -4.2369 10 1 1.5785 1.5534 -5.0830 11 1 2.6920 3.4411 -4.0451 12 1 3.9965 1.5857 -4.9031 13 6 3.5006 -2.0282 -1.0442 14 8 3.9971 -2.6125 -1.9884 15 6 3.3047 -2.7303 0.2362 16 6 2.0523 -2.7262 0.8654 17 6 1.9167 -3.3974 2.0644 18 6 3.0201 -4.0536 2.6096 19 6 2.8780 -4.7749 3.8974 20 6 3.9774 -5.4325 4.4459 21 6 3.8295 -6.1013 5.6492 22 6 2.5862 -6.0898 6.2646 23 6 1.5377 -5.4163 5.6633 24 7 1.7067 -4.7843 4.5205 25 7 4.1953 -4.0419 1.9929 26 6 4.3689 -3.4183 0.8422 27 8 5.5840 -3.4368 0.2446 28 1 -1.0499 0.0000 -0.0004 29 1 3.0096 -0.4770 0.9099 30 1 3.0088 1.0277 -0.0410 31 1 1.5392 2.5569 -1.7234 32 1 1.2131 -2.2101 0.4229 33 1 0.9653 -3.4142 2.5752 34 1 4.9313 -5.4206 3.9396 35 1 4.6635 -6.6196 6.0990 36 1 2.4380 -6.6016 7.2041 37 1 0.5684 -5.4058 6.1396 38 1 6.1628 -2.7079 0.5074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491690591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:34 Heat of formation + Delta-G solvation = 88.313869 kcal Electronic energy + Delta-G solvation = -26076.742832 eV Core-core repulsion = 22273.820640 eV Total energy + Delta-G solvation = -3802.922192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73215 -39.87136 -38.25940 -36.81506 -35.26990 -33.08865 -32.79471 -31.88136 -31.42510 -31.39549 -29.37992 -26.62831 -25.55113 -24.24030 -23.96867 -22.50911 -22.10066 -19.84594 -18.56057 -18.02585 -17.42707 -16.84079 -16.49745 -16.44094 -16.00359 -15.66830 -15.17498 -14.89698 -14.34035 -14.17832 -14.07417 -13.93487 -13.46328 -13.43375 -12.98709 -12.76242 -12.45646 -12.25125 -12.04908 -11.85500 -11.41082 -11.39899 -11.14597 -10.60360 -10.46384 -10.11421 -9.86249 -9.77598 -9.59737 -9.45971 -9.40901 -9.22060 -8.78909 -8.62149 -8.19256 -8.06397 -6.39121 -3.98733 0.33485 1.11488 1.35357 1.55855 3.07818 3.18368 3.22861 3.36724 3.44599 3.70923 3.77787 4.01274 4.06867 4.11091 4.30368 4.51094 4.65538 4.72692 4.87414 4.95306 4.96992 5.14304 5.26121 5.33799 5.37285 5.54535 5.64412 5.69566 5.75105 5.93719 6.01486 6.20557 6.27124 6.35540 6.52008 6.66171 6.88859 7.04915 7.41672 7.71633 7.77086 7.88469 8.03034 8.30173 8.78050 8.98716 9.18784 9.73819 10.52387 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.023208 B = 0.003346 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.214024 B = 8365.404772 C = 9283.925629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.091 4.091 3 C 0.227 3.773 4 N -0.429 5.429 5 C -0.300 4.300 6 H 0.110 0.890 7 C 0.028 3.972 8 N -0.871 5.871 9 Si 0.936 3.064 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.482 3.518 14 O -0.563 6.563 15 C -0.144 4.144 16 C -0.047 4.047 17 C -0.139 4.139 18 C 0.176 3.824 19 C 0.174 3.826 20 C -0.132 4.132 21 C -0.081 4.081 22 C -0.172 4.172 23 C 0.101 3.899 24 N -0.471 5.471 25 N -0.495 5.495 26 C 0.343 3.657 27 O -0.462 6.462 28 H 0.199 0.801 29 H 0.052 0.948 30 H 0.129 0.871 31 H 0.271 0.729 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.159 0.841 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 -7.714 15.783 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.093 4.093 3 C 0.105 3.895 4 N -0.147 5.147 5 C -0.427 4.427 6 H 0.127 0.873 7 C -0.174 4.174 8 N -0.511 5.511 9 Si 0.762 3.238 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.270 3.730 14 O -0.447 6.447 15 C -0.152 4.152 16 C -0.073 4.073 17 C -0.160 4.160 18 C 0.039 3.961 19 C 0.037 3.963 20 C -0.153 4.153 21 C -0.107 4.107 22 C -0.192 4.192 23 C -0.058 4.058 24 N -0.180 5.180 25 N -0.214 5.214 26 C 0.161 3.839 27 O -0.268 6.268 28 H 0.216 0.784 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.023 -8.233 14.949 17.067 hybrid contribution -0.190 0.927 -0.460 1.052 sum -0.213 -7.306 14.489 16.229 Atomic orbital electron populations 1.24244 0.95351 1.05860 1.04281 1.22959 0.94109 0.95549 0.96725 1.18696 0.84630 0.99945 0.86261 1.43687 1.54113 1.07899 1.08978 1.19844 1.32058 1.01518 0.89320 0.87271 1.25376 0.95386 0.97102 0.99565 1.69889 1.33283 1.17286 1.30620 0.85761 0.79075 0.77896 0.81058 1.20274 1.20767 1.19271 1.17461 0.86507 0.82146 0.86899 1.90682 1.48127 1.65987 1.39875 1.21518 0.95066 1.00517 0.98070 1.22074 0.97012 0.94935 0.93284 1.22008 1.00215 0.97708 0.96069 1.18886 0.88607 0.96217 0.92412 1.19298 0.89327 0.95053 0.92582 1.22238 1.00641 0.96576 0.95796 1.21606 0.97675 0.96891 0.94516 1.22238 0.94193 1.01251 1.01553 1.22704 0.99207 0.92969 0.90933 1.67461 1.23920 1.17578 1.09066 1.66796 1.25388 1.19716 1.09546 1.18846 0.86534 0.91615 0.86893 1.84806 1.23570 1.53203 1.65178 0.78429 0.92982 0.85333 0.91751 0.83052 0.83216 0.83455 0.84591 0.84726 0.82368 0.74546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.53 18.81 29.55 0.56 -4.97 16 2 C -0.09 -1.97 8.66 -37.12 -0.32 -2.29 16 3 C 0.23 4.95 4.77 -6.83 -0.03 4.91 16 4 N -0.43 -10.55 2.60 -119.19 -0.31 -10.86 16 5 C -0.30 -7.94 9.47 -15.01 -0.14 -8.08 16 6 H 0.11 3.04 7.21 -52.49 -0.38 2.66 16 7 C 0.03 0.71 5.36 -17.45 -0.09 0.61 16 8 N -0.87 -21.40 7.98 55.50 0.44 -20.96 16 9 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.48 11.78 6.82 -12.56 -0.09 11.69 16 14 O -0.56 -15.77 16.26 -0.96 -0.02 -15.79 16 15 C -0.14 -2.96 4.57 -104.64 -0.48 -3.44 16 16 C -0.05 -0.86 7.95 -38.92 -0.31 -1.17 16 17 C -0.14 -2.24 9.58 -39.18 -0.38 -2.61 16 18 C 0.18 2.85 6.73 -82.89 -0.56 2.29 16 19 C 0.17 2.45 6.72 -82.95 -0.56 1.89 16 20 C -0.13 -1.57 9.61 -39.09 -0.38 -1.95 16 21 C -0.08 -0.73 10.17 -39.32 -0.40 -1.13 16 22 C -0.17 -1.39 10.11 -39.35 -0.40 -1.79 16 23 C 0.10 0.97 11.18 -17.57 -0.20 0.77 16 24 N -0.47 -6.13 9.38 -9.78 -0.09 -6.22 16 25 N -0.49 -8.57 9.39 -9.50 -0.09 -8.66 16 26 C 0.34 6.51 7.75 -16.63 -0.13 6.38 16 27 O -0.46 -8.42 12.69 -24.19 -0.31 -8.72 16 28 H 0.20 3.21 7.80 -54.10 -0.42 2.79 16 29 H 0.05 1.01 6.15 -51.93 -0.32 0.69 16 30 H 0.13 2.96 6.26 -51.93 -0.32 2.63 16 31 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 32 H 0.15 2.84 5.29 -52.48 -0.28 2.56 16 33 H 0.15 2.14 7.50 -52.49 -0.39 1.74 16 34 H 0.15 1.75 7.52 -52.49 -0.39 1.35 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.40 5.22 9.06 45.56 0.41 5.63 16 LS Contribution 336.70 15.07 5.07 5.07 Total: -1.00 -32.33 336.70 -6.72 -39.05 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -2.50 Total: 10.96 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -3.90 Total: 1.13 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.05 Total: -46.70 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.32 Total: -24.51 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.33 -6.72 -39.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491690591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.365 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds