Wall clock time and date at job start Tue Mar 31 2020 14:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47498 * 358.27330 * 3 2 1 5 5 N 1.46512 * 109.46961 * 238.27475 * 3 2 1 6 6 C 1.34770 * 120.00040 * 85.00203 * 5 3 2 7 7 O 1.21556 * 120.00084 * 359.97438 * 6 5 3 8 8 C 1.47877 * 120.00002 * 180.02562 * 6 5 3 9 9 C 1.39925 * 120.02523 * 359.72747 * 8 6 5 10 10 C 1.38330 * 120.35594 * 179.71989 * 9 8 6 11 11 C 1.37747 * 120.41551 * 0.55567 * 10 9 8 12 12 C 1.40751 * 120.03881 * 359.71931 * 11 10 9 13 13 C 1.41436 * 120.17967 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00027 * 24.43615 * 13 12 11 15 15 C 1.39938 * 120.00091 * 204.43887 * 13 12 11 16 16 N 1.30831 * 119.99929 * 17.88507 * 15 13 12 17 17 Si 1.86802 * 119.99909 * 197.87527 * 15 13 12 18 18 H 1.48498 * 109.46719 * 90.00581 * 17 15 13 19 19 H 1.48503 * 109.47065 * 210.00073 * 17 15 13 20 20 H 1.48493 * 109.47158 * 330.00474 * 17 15 13 21 21 C 1.38997 * 120.02942 * 179.97438 * 8 6 5 22 22 C 1.50701 * 109.47453 * 118.27418 * 3 2 1 23 23 C 1.38236 * 119.97498 * 260.00242 * 22 3 2 24 24 C 1.38201 * 120.02537 * 179.97438 * 23 22 3 25 25 C 1.38457 * 119.97341 * 359.97438 * 24 23 22 26 26 F 1.35105 * 120.02433 * 179.97438 * 25 24 23 27 27 C 1.38457 * 119.94766 * 0.25808 * 25 24 23 28 28 C 1.38191 * 119.97435 * 359.46849 * 27 25 24 29 29 H 4.18734 * 15.04022 * 359.97438 * 4 2 1 30 30 H 0.97001 * 119.99757 * 265.00059 * 5 3 2 31 31 H 1.08003 * 119.81700 * 359.96851 * 9 8 6 32 32 H 1.08004 * 119.79093 * 180.25730 * 10 9 8 33 33 H 1.08000 * 119.98069 * 179.74922 * 11 10 9 34 34 H 0.97003 * 119.99634 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.19611 * 359.97438 * 21 8 6 36 36 H 1.08003 * 119.98814 * 0.02562 * 23 22 3 37 37 H 1.08006 * 120.01270 * 180.02562 * 24 23 22 38 38 H 1.08003 * 120.00774 * 179.74102 * 27 25 24 39 39 H 1.08006 * 119.98800 * 180.30129 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0098 -1.0263 0.0310 5 7 3.1339 0.7273 1.1749 6 6 3.2630 0.0902 2.3556 7 8 2.9740 -1.0870 2.4458 8 6 3.7550 0.8238 3.5416 9 6 4.0922 2.1778 3.4373 10 6 4.5476 2.8720 4.5437 11 6 4.6854 2.2362 5.7578 12 6 4.3566 0.8732 5.8807 13 6 4.4964 0.2175 7.1261 14 1 4.4653 0.7874 8.0429 15 6 4.6751 -1.1697 7.1703 16 7 5.0599 -1.8142 6.0988 17 14 4.3645 -2.1012 8.7595 18 1 2.9444 -2.5323 8.8110 19 1 5.2464 -3.2948 8.8140 20 1 4.6559 -1.2172 9.9164 21 6 3.8878 0.1675 4.7597 22 6 3.1481 0.6739 -1.2513 23 6 3.5746 -0.0889 -2.3223 24 6 4.0348 0.5274 -3.4705 25 6 4.0680 1.9094 -3.5480 26 9 4.5181 2.5130 -4.6698 27 6 3.6449 2.6724 -2.4728 28 6 3.1799 2.0539 -1.3278 29 1 -1.0500 -0.0011 0.0005 30 1 3.3642 1.6668 1.1030 31 1 3.9924 2.6845 2.4887 32 1 4.8013 3.9180 4.4538 33 1 5.0455 2.7840 6.6161 34 1 5.1834 -2.7759 6.1294 35 1 3.6321 -0.8784 4.8439 36 1 3.5475 -1.1669 -2.2621 37 1 4.3677 -0.0687 -4.3074 38 1 3.6743 3.7504 -2.5306 39 1 2.8453 2.6488 -0.4908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491805446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:29 Heat of formation + Delta-G solvation = 18.594314 kcal Electronic energy + Delta-G solvation = -25037.139382 eV Core-core repulsion = 21211.273962 eV Total energy + Delta-G solvation = -3825.865420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.14236 -40.08532 -38.87837 -37.10964 -35.34853 -33.79545 -32.44451 -31.46025 -31.04078 -29.93155 -29.46595 -26.48480 -25.26156 -23.53839 -22.53893 -21.87667 -20.98101 -19.71957 -18.42892 -18.15462 -17.72577 -16.75689 -16.50354 -15.84305 -15.60676 -15.44824 -15.09701 -14.90088 -14.69925 -14.18090 -13.87569 -13.74874 -13.62230 -13.23542 -13.12739 -12.70278 -12.53945 -12.46115 -12.29048 -11.68463 -11.32206 -11.20455 -11.12459 -10.78919 -10.58839 -10.53327 -10.23351 -10.05882 -9.73291 -9.40893 -9.25121 -9.15637 -9.01965 -8.88038 -7.68654 -7.56193 -6.83494 -4.44732 0.78184 0.93514 2.13525 2.64738 2.78329 2.83869 3.06071 3.09261 3.13187 3.26799 3.73489 3.78721 3.89590 3.96899 4.37296 4.42238 4.54289 4.59831 4.69797 4.95347 5.03685 5.32399 5.56550 5.58748 5.64516 5.73470 5.81748 5.89309 5.95036 6.03717 6.16030 6.22663 6.55880 6.65688 6.68091 6.94371 6.96914 7.17418 7.33716 7.63203 7.64162 7.69511 7.86997 7.99100 8.14025 8.46548 8.76031 8.79048 8.83275 10.11234 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.002774 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.171137 B =10089.685142 C =10641.409472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.191 4.191 3 C 0.299 3.701 4 H 0.118 0.882 5 N -0.729 5.729 6 C 0.568 3.432 7 O -0.538 6.538 8 C -0.128 4.128 9 C -0.219 4.219 10 C -0.096 4.096 11 C -0.211 4.211 12 C 0.099 3.901 13 C -0.459 4.459 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.782 5.782 17 Si 0.911 3.089 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.090 4.090 22 C -0.095 4.095 23 C -0.072 4.072 24 C -0.151 4.151 25 C 0.099 3.901 26 F -0.140 7.140 27 C -0.149 4.149 28 C -0.077 4.077 29 H 0.218 0.782 30 H 0.401 0.599 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.285 0.715 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 4.663 -15.483 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.192 4.192 3 C 0.194 3.806 4 H 0.135 0.865 5 N -0.383 5.383 6 C 0.360 3.640 7 O -0.415 6.415 8 C -0.131 4.131 9 C -0.239 4.239 10 C -0.115 4.115 11 C -0.231 4.231 12 C 0.096 3.904 13 C -0.488 4.488 14 H 0.100 0.900 15 C -0.146 4.146 16 N -0.406 5.406 17 Si 0.735 3.265 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.111 4.111 22 C -0.095 4.095 23 C -0.091 4.091 24 C -0.170 4.170 25 C 0.080 3.920 26 F -0.119 7.119 27 C -0.168 4.168 28 C -0.095 4.095 29 H 0.235 0.765 30 H 0.239 0.761 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.747 3.582 -15.521 16.364 hybrid contribution -0.077 0.174 0.358 0.406 sum -3.824 3.756 -15.163 16.082 Atomic orbital electron populations 1.24879 0.95781 1.00260 0.99306 1.23215 0.94277 1.00750 1.00989 1.16307 0.83475 0.97850 0.82928 0.86478 1.46107 1.68981 1.14552 1.08697 1.18922 0.75863 0.86551 0.82704 1.90711 1.49932 1.16171 1.84700 1.19400 1.06448 0.94140 0.93091 1.20314 1.12546 0.93612 0.97400 1.20428 1.00067 0.97522 0.93442 1.21106 1.09190 0.96332 0.96481 1.17601 0.88629 0.91116 0.93046 1.19606 1.43632 0.91920 0.93612 0.90010 1.25974 0.92201 0.98247 0.98210 1.69790 1.30406 1.10643 1.29791 0.86262 0.79394 0.79047 0.81785 1.19127 1.20194 1.18558 1.21643 0.98207 1.00649 0.90559 1.19801 1.00460 0.93927 0.95357 1.20895 0.96082 1.00576 0.91504 1.21124 1.03170 0.92762 0.99895 1.17756 0.99609 0.91184 0.83482 1.91505 1.86788 1.83809 1.49793 1.21120 1.01914 1.00863 0.92878 1.20855 0.97292 0.93909 0.97454 0.76529 0.76104 0.89358 0.88848 0.88566 0.90394 0.84787 0.84362 0.84377 0.84359 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 19.25 29.55 0.57 -1.81 16 2 C -0.19 -2.79 12.81 -37.12 -0.48 -3.27 16 3 C 0.30 4.26 2.62 -71.86 -0.19 4.07 16 4 H 0.12 1.76 7.44 -51.93 -0.39 1.38 16 5 N -0.73 -11.86 4.94 -58.63 -0.29 -12.15 16 6 C 0.57 12.16 7.72 -12.32 -0.10 12.07 16 7 O -0.54 -13.18 16.00 5.32 0.09 -13.09 16 8 C -0.13 -2.95 5.87 -105.04 -0.62 -3.57 16 9 C -0.22 -4.48 9.55 -38.92 -0.37 -4.85 16 10 C -0.10 -2.01 10.01 -39.73 -0.40 -2.40 16 11 C -0.21 -4.93 9.78 -38.81 -0.38 -5.31 16 12 C 0.10 2.57 5.57 -106.87 -0.60 1.97 16 13 C -0.46 -11.89 9.05 -37.73 -0.34 -12.23 16 14 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 15 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 16 N -0.78 -20.44 10.96 55.55 0.61 -19.83 16 17 Si 0.91 18.58 29.60 -169.99 -5.03 13.55 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 21 C -0.09 -2.38 8.24 -38.44 -0.32 -2.69 16 22 C -0.09 -1.08 4.92 -104.62 -0.51 -1.60 16 23 C -0.07 -0.71 9.67 -39.60 -0.38 -1.10 16 24 C -0.15 -1.40 10.03 -39.51 -0.40 -1.80 16 25 C 0.10 1.00 7.30 -39.42 -0.29 0.72 16 26 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 27 C -0.15 -1.43 10.03 -39.52 -0.40 -1.82 16 28 C -0.08 -0.79 9.04 -39.60 -0.36 -1.15 16 29 H 0.22 1.96 7.80 -54.09 -0.42 1.54 16 30 H 0.40 5.63 4.89 -40.82 -0.20 5.44 16 31 H 0.09 1.47 6.38 -52.48 -0.33 1.14 16 32 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 34 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 35 H 0.13 3.81 5.74 -52.49 -0.30 3.51 16 36 H 0.14 1.12 8.04 -52.48 -0.42 0.70 16 37 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 39 H 0.13 1.25 6.92 -52.48 -0.36 0.88 16 LS Contribution 352.29 15.07 5.31 5.31 Total: -1.00 -30.32 352.29 -8.58 -38.90 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -3.67 Total: 11.81 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -5.63 Total: -23.04 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.32 Total: -31.98 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.32 -8.58 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491805446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.497 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds