Wall clock time and date at job start Tue Mar 31 2020 14:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47498 * 358.27330 * 3 2 1 5 5 N 1.46512 * 109.46961 * 238.27475 * 3 2 1 6 6 C 1.34770 * 120.00040 * 85.00203 * 5 3 2 7 7 O 1.21556 * 120.00084 * 359.97438 * 6 5 3 8 8 C 1.47877 * 120.00002 * 180.02562 * 6 5 3 9 9 C 1.39925 * 120.02523 * 359.72747 * 8 6 5 10 10 C 1.38330 * 120.35594 * 179.71989 * 9 8 6 11 11 C 1.37747 * 120.41551 * 0.55567 * 10 9 8 12 12 C 1.40751 * 120.03881 * 359.71931 * 11 10 9 13 13 C 1.41436 * 120.17967 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00027 * 24.43615 * 13 12 11 15 15 C 1.39938 * 120.00091 * 204.43887 * 13 12 11 16 16 N 1.30831 * 119.99929 * 17.88507 * 15 13 12 17 17 Si 1.86802 * 119.99909 * 197.87527 * 15 13 12 18 18 H 1.48498 * 109.46719 * 90.00581 * 17 15 13 19 19 H 1.48503 * 109.47065 * 210.00073 * 17 15 13 20 20 H 1.48493 * 109.47158 * 330.00474 * 17 15 13 21 21 C 1.38997 * 120.02942 * 179.97438 * 8 6 5 22 22 C 1.50701 * 109.47453 * 118.27418 * 3 2 1 23 23 C 1.38236 * 119.97498 * 260.00242 * 22 3 2 24 24 C 1.38201 * 120.02537 * 179.97438 * 23 22 3 25 25 C 1.38457 * 119.97341 * 359.97438 * 24 23 22 26 26 F 1.35105 * 120.02433 * 179.97438 * 25 24 23 27 27 C 1.38457 * 119.94766 * 0.25808 * 25 24 23 28 28 C 1.38191 * 119.97435 * 359.46849 * 27 25 24 29 29 H 4.18734 * 15.04022 * 359.97438 * 4 2 1 30 30 H 0.97001 * 119.99757 * 265.00059 * 5 3 2 31 31 H 1.08003 * 119.81700 * 359.96851 * 9 8 6 32 32 H 1.08004 * 119.79093 * 180.25730 * 10 9 8 33 33 H 1.08000 * 119.98069 * 179.74922 * 11 10 9 34 34 H 0.97003 * 119.99634 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.19611 * 359.97438 * 21 8 6 36 36 H 1.08003 * 119.98814 * 0.02562 * 23 22 3 37 37 H 1.08006 * 120.01270 * 180.02562 * 24 23 22 38 38 H 1.08003 * 120.00774 * 179.74102 * 27 25 24 39 39 H 1.08006 * 119.98800 * 180.30129 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0098 -1.0263 0.0310 5 7 3.1339 0.7273 1.1749 6 6 3.2630 0.0902 2.3556 7 8 2.9740 -1.0870 2.4458 8 6 3.7550 0.8238 3.5416 9 6 4.0922 2.1778 3.4373 10 6 4.5476 2.8720 4.5437 11 6 4.6854 2.2362 5.7578 12 6 4.3566 0.8732 5.8807 13 6 4.4964 0.2175 7.1261 14 1 4.4653 0.7874 8.0429 15 6 4.6751 -1.1697 7.1703 16 7 5.0599 -1.8142 6.0988 17 14 4.3645 -2.1012 8.7595 18 1 2.9444 -2.5323 8.8110 19 1 5.2464 -3.2948 8.8140 20 1 4.6559 -1.2172 9.9164 21 6 3.8878 0.1675 4.7597 22 6 3.1481 0.6739 -1.2513 23 6 3.5746 -0.0889 -2.3223 24 6 4.0348 0.5274 -3.4705 25 6 4.0680 1.9094 -3.5480 26 9 4.5181 2.5130 -4.6698 27 6 3.6449 2.6724 -2.4728 28 6 3.1799 2.0539 -1.3278 29 1 -1.0500 -0.0011 0.0005 30 1 3.3642 1.6668 1.1030 31 1 3.9924 2.6845 2.4887 32 1 4.8013 3.9180 4.4538 33 1 5.0455 2.7840 6.6161 34 1 5.1834 -2.7759 6.1294 35 1 3.6321 -0.8784 4.8439 36 1 3.5475 -1.1669 -2.2621 37 1 4.3677 -0.0687 -4.3074 38 1 3.6743 3.7504 -2.5306 39 1 2.8453 2.6488 -0.4908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491805446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:28 Heat of formation + Delta-G solvation = 2.995356 kcal Electronic energy + Delta-G solvation = -25037.815804 eV Core-core repulsion = 21211.273962 eV Total energy + Delta-G solvation = -3826.541842 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.93186 -41.34469 -40.11994 -38.82466 -36.64335 -35.61160 -33.74726 -32.27960 -32.19464 -31.43744 -31.22540 -27.71261 -27.00912 -24.55226 -23.86618 -22.90041 -22.70457 -21.31151 -19.71423 -19.44649 -18.77388 -18.09044 -17.68088 -16.98927 -16.86008 -16.62727 -16.51720 -16.28319 -16.01681 -15.55250 -15.11186 -15.03539 -14.80768 -14.55714 -14.43834 -14.26727 -14.01532 -13.49893 -13.32176 -13.17110 -12.96689 -12.81846 -12.53982 -12.18945 -12.05643 -11.93053 -11.68251 -11.51261 -11.27833 -11.08355 -10.82773 -10.49482 -10.14080 -9.72211 -9.50207 -9.39192 -8.66933 -6.38131 -0.02995 0.19926 0.34987 1.00629 1.36691 1.46997 1.49910 1.50912 1.79286 2.05546 2.19076 2.40989 2.53485 2.77615 3.20267 3.38083 3.63925 3.67914 3.70961 3.92021 3.96672 4.16302 4.24959 4.41454 4.51368 4.58225 4.83485 4.88492 4.90796 4.98426 5.07517 5.08616 5.13873 5.18051 5.20945 5.31288 5.44696 5.51377 5.80632 5.84948 5.91651 6.05080 6.27834 6.44053 6.59159 6.63241 6.87851 6.94141 7.20714 8.29859 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.002774 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.171137 B =10089.685142 C =10641.409472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.237 4.237 3 C 0.301 3.699 4 H 0.101 0.899 5 N -0.706 5.706 6 C 0.567 3.433 7 O -0.580 6.580 8 C -0.139 4.139 9 C -0.198 4.198 10 C -0.094 4.094 11 C -0.216 4.216 12 C 0.067 3.933 13 C -0.497 4.497 14 H 0.084 0.916 15 C 0.030 3.970 16 N -0.824 5.824 17 Si 0.982 3.018 18 H -0.267 1.267 19 H -0.269 1.269 20 H -0.251 1.251 21 C -0.129 4.129 22 C -0.105 4.105 23 C -0.076 4.076 24 C -0.148 4.148 25 C 0.089 3.911 26 F -0.144 7.144 27 C -0.146 4.146 28 C -0.081 4.081 29 H 0.252 0.748 30 H 0.414 0.586 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.109 0.891 34 H 0.287 0.713 35 H 0.099 0.901 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 6.850 -16.925 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.238 4.238 3 C 0.197 3.803 4 H 0.119 0.881 5 N -0.360 5.360 6 C 0.357 3.643 7 O -0.460 6.460 8 C -0.142 4.142 9 C -0.217 4.217 10 C -0.112 4.112 11 C -0.236 4.236 12 C 0.065 3.935 13 C -0.526 4.526 14 H 0.102 0.898 15 C -0.185 4.185 16 N -0.449 5.449 17 Si 0.803 3.197 18 H -0.192 1.192 19 H -0.194 1.194 20 H -0.174 1.174 21 C -0.149 4.149 22 C -0.106 4.106 23 C -0.094 4.094 24 C -0.166 4.166 25 C 0.070 3.930 26 F -0.123 7.123 27 C -0.165 4.165 28 C -0.099 4.099 29 H 0.268 0.732 30 H 0.254 0.746 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.127 0.873 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.168 0.832 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.142 5.826 -17.005 18.446 hybrid contribution -0.003 -0.342 0.589 0.681 sum -4.146 5.484 -16.415 17.797 Atomic orbital electron populations 1.25787 0.96717 0.98315 0.97422 1.23483 0.94938 1.02584 1.02778 1.16321 0.83849 0.97134 0.83025 0.88135 1.45859 1.67349 1.14961 1.07829 1.18770 0.75766 0.85999 0.83726 1.90686 1.51899 1.17925 1.85504 1.19710 1.06066 0.95566 0.92835 1.20840 1.09213 0.92257 0.99417 1.20920 0.98503 0.99615 0.92166 1.21420 1.08495 0.95392 0.98286 1.17943 0.89572 0.92691 0.93304 1.19870 1.45782 0.93024 0.93900 0.89786 1.26845 0.91340 0.98835 1.01527 1.69888 1.32123 1.10856 1.32041 0.85201 0.79034 0.77799 0.77709 1.19161 1.19406 1.17385 1.21443 1.01284 0.99693 0.92529 1.19663 1.01817 0.94591 0.94552 1.21059 0.95753 1.01307 0.91317 1.21334 1.02349 0.92791 1.00153 1.17974 0.99814 0.91655 0.83588 1.91499 1.86871 1.83895 1.50015 1.21318 1.00999 1.01944 0.92201 1.20966 0.97372 0.93411 0.98182 0.73180 0.74633 0.84665 0.84252 0.87320 0.90285 0.88259 0.83188 0.82356 0.82317 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 19.25 74.32 1.43 -2.53 16 2 C -0.24 -6.71 12.81 31.12 0.40 -6.31 16 3 C 0.30 8.43 2.62 42.44 0.11 8.54 16 4 H 0.10 3.13 7.44 -2.39 -0.02 3.11 16 5 N -0.71 -22.31 4.94 -457.69 -2.26 -24.57 16 6 C 0.57 24.63 7.72 86.80 0.67 25.30 16 7 O -0.58 -29.77 16.00 -3.89 -0.06 -29.83 16 8 C -0.14 -6.46 5.87 -20.13 -0.12 -6.58 16 9 C -0.20 -7.57 9.55 22.70 0.22 -7.35 16 10 C -0.09 -3.63 10.01 22.18 0.22 -3.41 16 11 C -0.22 -9.94 9.78 22.77 0.22 -9.72 16 12 C 0.07 3.62 5.57 -21.32 -0.12 3.50 16 13 C -0.50 -26.86 9.05 23.47 0.21 -26.65 16 14 H 0.08 4.29 7.91 -2.91 -0.02 4.27 16 15 C 0.03 1.54 5.14 85.25 0.44 1.98 16 16 N -0.82 -45.69 10.96 21.83 0.24 -45.45 16 17 Si 0.98 39.49 29.60 68.60 2.03 41.52 16 18 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 19 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 21 C -0.13 -7.10 8.24 23.01 0.19 -6.91 16 22 C -0.11 -2.26 4.92 -19.86 -0.10 -2.36 16 23 C -0.08 -1.39 9.67 22.26 0.22 -1.18 16 24 C -0.15 -2.43 10.03 22.31 0.22 -2.21 16 25 C 0.09 1.60 7.30 22.37 0.16 1.76 16 26 F -0.14 -2.76 17.27 44.97 0.78 -1.99 16 27 C -0.15 -2.40 10.03 22.31 0.22 -2.17 16 28 C -0.08 -1.48 9.04 22.26 0.20 -1.28 16 29 H 0.25 3.78 7.80 -4.42 -0.03 3.75 16 30 H 0.41 10.56 4.89 -92.71 -0.45 10.10 16 31 H 0.14 3.85 6.38 -2.91 -0.02 3.83 16 32 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 33 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 35 H 0.10 6.10 5.74 -2.91 -0.02 6.09 16 36 H 0.15 2.29 8.04 -2.91 -0.02 2.27 16 37 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.15 2.23 6.92 -2.91 -0.02 2.21 16 Total: -1.00 -70.50 352.29 6.18 -64.32 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.65 Total: 33.59 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 4.80 Total: -37.58 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -2.02 Total: -70.03 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.06 Total: -29.83 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -70.50 6.18 -64.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491805446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.315 kcal (2) G-P(sol) polarization free energy of solvation -70.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds