Wall clock time and date at job start Tue Mar 31 2020 14:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09004 * 109.46869 * 233.62543 * 3 2 1 5 5 N 1.46503 * 109.47220 * 353.62030 * 3 2 1 6 6 C 1.34781 * 120.00067 * 274.99995 * 5 3 2 7 7 O 1.21555 * 119.99709 * 0.02562 * 6 5 3 8 8 C 1.47877 * 120.00305 * 180.27261 * 6 5 3 9 9 C 1.39922 * 120.02233 * 359.45656 * 8 6 5 10 10 C 1.38332 * 120.35492 * 179.71407 * 9 8 6 11 11 C 1.37745 * 120.41415 * 0.55922 * 10 9 8 12 12 C 1.40750 * 120.04103 * 359.71744 * 11 10 9 13 13 C 1.41433 * 120.17941 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99860 * 150.17909 * 13 12 11 15 15 C 1.39933 * 120.00422 * 330.18777 * 13 12 11 16 16 N 1.30826 * 120.00531 * 161.72717 * 15 13 12 17 17 Si 1.86796 * 119.99681 * 341.72169 * 15 13 12 18 18 H 1.48498 * 109.47445 * 95.41498 * 17 15 13 19 19 H 1.48507 * 109.47200 * 215.41691 * 17 15 13 20 20 H 1.48503 * 109.47240 * 335.41491 * 17 15 13 21 21 C 1.38995 * 120.02597 * 179.72786 * 8 6 5 22 22 C 1.50695 * 109.47209 * 113.61834 * 3 2 1 23 23 C 1.38244 * 119.97865 * 279.72548 * 22 3 2 24 24 C 1.38191 * 120.02876 * 179.76830 * 23 22 3 25 25 C 1.38461 * 119.97329 * 0.50678 * 24 23 22 26 26 F 1.35102 * 120.02817 * 179.76923 * 25 24 23 27 27 C 1.38462 * 119.94606 * 359.74536 * 25 24 23 28 28 C 1.38196 * 119.97838 * 0.02562 * 27 25 24 29 29 H 4.18743 * 15.04002 * 359.97438 * 4 2 1 30 30 H 0.96990 * 120.00127 * 95.00142 * 5 3 2 31 31 H 1.08002 * 119.82078 * 359.96976 * 9 8 6 32 32 H 1.08001 * 119.78888 * 180.25380 * 10 9 8 33 33 H 1.08003 * 119.98022 * 179.74249 * 11 10 9 34 34 H 0.96994 * 120.00004 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.20415 * 359.97438 * 21 8 6 36 36 H 1.08000 * 119.98165 * 0.02562 * 23 22 3 37 37 H 1.07994 * 120.01628 * 180.25511 * 24 23 22 38 38 H 1.08006 * 120.00897 * 179.97438 * 27 25 24 39 39 H 1.07998 * 119.98771 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.6103 0.8275 5 7 3.1350 -1.3718 0.1535 6 6 3.2640 -1.9077 1.3834 7 8 2.9741 -1.2523 2.3653 8 6 3.7633 -3.2909 1.5387 9 6 4.0912 -4.0479 0.4085 10 6 4.5644 -5.3404 0.5461 11 6 4.7075 -5.9014 1.7960 12 6 4.3773 -5.1573 2.9442 13 6 4.5236 -5.7302 4.2290 14 1 4.7465 -5.1015 5.0784 15 6 4.3796 -7.1116 4.3998 16 7 4.8523 -7.6909 5.4734 17 14 3.5123 -8.1285 3.0948 18 1 4.5189 -8.7140 2.1734 19 1 2.7444 -9.2196 3.7469 20 1 2.5839 -7.2605 2.3268 21 6 3.9018 -3.8421 2.8072 22 6 3.1481 0.5701 -1.3017 23 6 3.1880 -0.2234 -2.4331 24 6 3.6437 0.2991 -3.6285 25 6 4.0704 1.6149 -3.6904 26 9 4.5205 2.1255 -4.8574 27 6 4.0349 2.4072 -2.5554 28 6 3.5743 1.8839 -1.3621 29 1 -1.0500 0.0000 -0.0008 30 1 3.3659 -1.8948 -0.6300 31 1 3.9781 -3.6192 -0.5763 32 1 4.8186 -5.9151 -0.3324 33 1 5.0737 -6.9126 1.8950 34 1 4.7521 -8.6483 5.5918 35 1 3.6462 -3.2629 3.6821 36 1 2.8589 -1.2508 -2.3836 37 1 3.6709 -0.3197 -4.5131 38 1 4.3678 3.4336 -2.6024 39 1 3.5461 2.5018 -0.4769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491805448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:32 Heat of formation + Delta-G solvation = 20.064394 kcal Electronic energy + Delta-G solvation = -24903.774044 eV Core-core repulsion = 21077.972371 eV Total energy + Delta-G solvation = -3825.801673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.21183 -40.23824 -39.07389 -37.40961 -35.52429 -33.76933 -32.61027 -31.54424 -31.22031 -30.41109 -29.98831 -26.64800 -25.17188 -23.67260 -22.91500 -22.03098 -20.74631 -20.19024 -18.58670 -18.34480 -17.82030 -16.81329 -16.58652 -16.03089 -15.90607 -15.66229 -15.32617 -15.03333 -14.72307 -14.33182 -13.95479 -13.82914 -13.78469 -13.64370 -13.20535 -12.81326 -12.78742 -12.56762 -12.39350 -12.06670 -11.66974 -11.40258 -11.09441 -10.84123 -10.72277 -10.58550 -10.33024 -10.05276 -9.77561 -9.52046 -9.48564 -9.25476 -9.19175 -8.97986 -7.92999 -7.81262 -7.04396 -4.59445 0.69468 0.85265 1.83117 2.47069 2.52389 2.73812 3.02383 3.14491 3.17526 3.22884 3.53356 3.57249 3.89293 3.89668 4.26300 4.33676 4.41447 4.48488 4.58616 4.86397 4.94342 5.15749 5.28528 5.46276 5.54924 5.55260 5.73871 5.80446 5.80920 5.86155 5.96202 6.05210 6.33990 6.46686 6.47691 6.61101 6.63705 6.92538 7.15239 7.34188 7.44222 7.53367 7.64770 7.71657 7.92704 8.24098 8.48202 8.55639 8.67226 9.97655 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020933 B = 0.002683 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.282266 B =10433.877682 C =10982.652602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.195 4.195 3 C 0.301 3.699 4 H 0.119 0.881 5 N -0.726 5.726 6 C 0.568 3.432 7 O -0.539 6.539 8 C -0.108 4.108 9 C -0.217 4.217 10 C -0.082 4.082 11 C -0.221 4.221 12 C 0.082 3.918 13 C -0.441 4.441 14 H 0.094 0.906 15 C 0.083 3.917 16 N -0.802 5.802 17 Si 0.911 3.089 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.244 1.244 21 C -0.134 4.134 22 C -0.097 4.097 23 C -0.077 4.077 24 C -0.149 4.149 25 C 0.100 3.900 26 F -0.140 7.140 27 C -0.151 4.151 28 C -0.072 4.072 29 H 0.219 0.781 30 H 0.403 0.597 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.287 0.713 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 13.523 -16.475 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.196 4.196 3 C 0.196 3.804 4 H 0.136 0.864 5 N -0.381 5.381 6 C 0.359 3.641 7 O -0.417 6.417 8 C -0.111 4.111 9 C -0.237 4.237 10 C -0.100 4.100 11 C -0.241 4.241 12 C 0.079 3.921 13 C -0.469 4.469 14 H 0.112 0.888 15 C -0.136 4.136 16 N -0.426 5.426 17 Si 0.737 3.263 18 H -0.195 1.195 19 H -0.216 1.216 20 H -0.167 1.167 21 C -0.154 4.154 22 C -0.097 4.097 23 C -0.095 4.095 24 C -0.168 4.168 25 C 0.081 3.919 26 F -0.118 7.118 27 C -0.169 4.169 28 C -0.090 4.090 29 H 0.235 0.765 30 H 0.241 0.759 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.134 0.866 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.939 13.798 -15.572 21.175 hybrid contribution -0.336 -0.824 -1.098 1.413 sum -4.275 12.975 -16.670 21.552 Atomic orbital electron populations 1.24913 0.95808 0.98586 1.00444 1.23164 0.94239 1.01642 1.00573 1.16310 0.83534 0.85208 0.95369 0.86391 1.46087 1.68586 1.13829 1.09576 1.18859 0.75980 0.87314 0.81945 1.90715 1.50066 1.62649 1.38246 1.19350 1.04836 0.91603 0.95321 1.20359 1.11950 0.96089 0.95304 1.20505 0.98468 0.94676 0.96358 1.21186 1.09471 1.00543 0.92874 1.17696 0.89580 0.91627 0.93219 1.19528 1.40399 0.92556 0.94437 0.88785 1.26174 0.92966 0.98235 0.96271 1.69687 1.33077 1.12806 1.26985 0.86312 0.80714 0.78892 0.80398 1.19509 1.21621 1.16672 1.21277 1.02694 0.96543 0.94878 1.19779 1.00657 0.94766 0.94535 1.20844 0.97358 1.00144 0.91186 1.21128 1.01881 0.94145 0.99600 1.17766 0.99443 0.92850 0.81844 1.91510 1.86746 1.87359 1.46211 1.21134 1.03120 1.00865 0.91811 1.20890 0.96042 0.94288 0.97785 0.76468 0.75950 0.88725 0.88223 0.87837 0.90260 0.86589 0.84811 0.84323 0.84328 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 19.25 29.55 0.57 -1.56 16 2 C -0.19 -2.60 12.81 -37.12 -0.48 -3.08 16 3 C 0.30 3.81 2.62 -71.87 -0.19 3.62 16 4 H 0.12 1.56 7.44 -51.93 -0.39 1.18 16 5 N -0.73 -10.50 4.94 -58.63 -0.29 -10.79 16 6 C 0.57 10.82 7.72 -12.31 -0.10 10.73 16 7 O -0.54 -11.78 16.00 5.32 0.09 -11.70 16 8 C -0.11 -2.25 5.87 -105.04 -0.62 -2.86 16 9 C -0.22 -4.06 9.55 -38.92 -0.37 -4.43 16 10 C -0.08 -1.62 10.01 -39.73 -0.40 -2.02 16 11 C -0.22 -5.05 7.17 -38.81 -0.28 -5.33 16 12 C 0.08 2.02 5.10 -106.87 -0.55 1.48 16 13 C -0.44 -11.69 9.57 -37.73 -0.36 -12.05 16 14 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 15 C 0.08 2.12 5.40 -17.35 -0.09 2.03 16 16 N -0.80 -20.88 13.93 55.55 0.77 -20.11 16 17 Si 0.91 20.06 24.52 -169.99 -4.17 15.89 16 18 H -0.27 -5.68 6.71 56.52 0.38 -5.30 16 19 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.24 -5.49 6.86 56.52 0.39 -5.11 16 21 C -0.13 -3.15 9.34 -38.44 -0.36 -3.51 16 22 C -0.10 -0.98 4.92 -104.62 -0.51 -1.50 16 23 C -0.08 -0.71 9.04 -39.60 -0.36 -1.07 16 24 C -0.15 -1.29 10.03 -39.52 -0.40 -1.69 16 25 C 0.10 0.93 7.30 -39.42 -0.29 0.64 16 26 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 27 C -0.15 -1.26 10.03 -39.51 -0.40 -1.65 16 28 C -0.07 -0.63 9.67 -39.59 -0.38 -1.01 16 29 H 0.22 1.77 7.80 -54.09 -0.42 1.35 16 30 H 0.40 4.94 4.87 -40.82 -0.20 4.75 16 31 H 0.09 1.40 6.38 -52.49 -0.33 1.07 16 32 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.10 2.34 4.72 -52.48 -0.25 2.10 16 34 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 35 H 0.12 2.79 7.64 -52.49 -0.40 2.39 16 36 H 0.13 1.09 6.90 -52.49 -0.36 0.73 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.14 0.96 8.04 -52.49 -0.42 0.53 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -29.84 347.02 -7.51 -37.35 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.64 Total: 8.73 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -5.55 Total: -23.25 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.48 Total: -30.89 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.17 Total: 15.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.84 -7.51 -37.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491805448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.416 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds